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Simple sequence repeat (SSR)
>UN49872
GGAGAAAGAGAGAGAAAGAAGAAAAGTCTCTCTTTTTTTTTTCTTCTTCTCCCAGATTCTCTCCTCCTCCTGCGAGATCAAATCTTTTTTCTCT
CTCACCTTCCTTGGTTTTCTCGGCGGCTCCATCTCTTTTTTTTTCTTCTTTTCTCAGAATCGTTTGTTTCCATTTTTCTCGGGTATCTTTCTCC
CTTCTGCAGAGGCCATGTCGGGCAAAGGTCGTCCCTTGCCGAAGTTTGGTGAATGGGATGTGAATGATCCAGCATCAGCTGAAGGTTTCACAGT
GATATTCAACAAAGCTAGGGATGAGAAAAAGACTGGTGGCAAACCCGGATCGCCCGGTAAATCTACTGATGGTCATGCTAAGTCCGGAGGAGGA
GGAGGAGATCCTAGTAAACCTCAGCCTAAAAAGTGGCTCTGCTGCATGCAGTCTCCGGCTGTGGACTCTTGATTGACACTAAAAGATGGATTTG
TTTGCTGCGCAAAGAAAAAAAGAGAGTCACATTGCTTAGACATCTAAAAGCAATGTTCCCTTCTTTTTTATGTTTTATTGTCTTTCTTGGAGTA
CCTACGACAACAAAAGGTTACTAAGATAGGTTGGAGCCGCCCCCCCCCCCCCTTAGTATCACGATTATGATTCCTTCTTTGAAGTTGTTTCTTC
TTCTAT |
Primers for UN49872 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TTGTTTCCATTTTTCTCGGG |
59.91 |
20 |
ATGCAGCAGAGCCACTTTTT |
60.022 |
20 |
266 |
158 |
423 |
| 2 |
CTTGCCGAAGTTTGGTGAAT |
60.11 |
20 |
ATGCAGCAGAGCCACTTTTT |
60.022 |
20 |
201 |
223 |
423 |
| 3 |
TGGTGAATGGGATGTGAATG |
60.177 |
20 |
ATGCAGCAGAGCCACTTTTT |
60.022 |
20 |
189 |
235 |
423 |
|
|
