BLASTX 7.6.2

Query= UN00317 /QuerySize=1322
        (1321 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA...    367   1e-101
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP...    149   5e-036

>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
        BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
        chr3:23327006-23328620 REVERSE

          Length = 407

 Score =  367 bits (941), Expect = 1e-101
 Identities = 180/192 (93%), Positives = 184/192 (95%)
 Frame = -3

Query: 671 HVGVEKYLAETFANWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGLQLTNIFH 492
           HV VEKYLAETF NWASFRPQYMIGSGNNKDCEEWFFDRIVRDR VPIPGSGLQLTNI H
Sbjct: 216 HVVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISH 275

Query: 491 VRDLSSMLTSAASNPEAASCNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGV 312
           VRDLSSMLTSA +NPEAAS NIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGV
Sbjct: 276 VRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGV 335

Query: 311 DAKKAFPFRNMHFYAEPRAAKDILGWESKTNLPEDLKERYEEYVKIGRDKKEMKFELDDK 132
           DAKKAF FRNMHFYAEPRAAKD+LGWESKTNLPEDLKER+EEYVKIGRDKKE+KFELDDK
Sbjct: 336 DAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDK 395

Query: 131 ILEALKTPVAA* 96
           ILEALKTPVAA*
Sbjct: 396 ILEALKTPVAA* 407


 Score =  326 bits (835), Expect = 2e-089
 Identities = 175/201 (87%), Positives = 185/201 (92%), Gaps = 6/201 (2%)
 Frame = -2

Query: 1302 MAALSSSSLFFSSKTAIPINNLTLTPPSLHRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 1126
            MAALSSSSLFFSSKT  PI+NL L PPSLHRFSLPSSSSSFSSL SSSSS+S   T SL+
Sbjct:    1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59

Query: 1125 SSRRSSPQEFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 958
            +SRR SPQ+FTVKA    EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct:   60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119

Query:  957 SDKMKKTPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 778
            S+KMKK PF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct:  120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179

Query:  777 KSSGVKQFLFISSAGIYKSTE 715
            KSSGVKQFLFISSAGIYKSTE
Sbjct:  180 KSSGVKQFLFISSAGIYKSTE 200

>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
        BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
        FORWARD

          Length = 379

 Score =  149 bits (375), Expect = 5e-036
 Identities = 82/195 (42%), Positives = 109/195 (55%), Gaps = 9/195 (4%)
 Frame = -3

Query: 707 SR*RGRSESRRSHVGVEKYLAETFANWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPI 528
           SR +G+ E+       E  L     NW S RP Y+ G  N    EEWFF R+   RP+P+
Sbjct: 185 SRHKGKLET-------ESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPV 237

Query: 527 PGSGLQLTNIFHVRDLSSMLTSAASNPEAASCNIFNCVSDRAVTLDGMAKLCAAAAG-KT 351
           P SG+Q++ + HV+DL++   +   N E AS  IFN   ++ VT DG+AK CA A G   
Sbjct: 238 PNSGIQISQLGHVKDLATAFLNVLGN-EKASREIFNISGEKYVTFDGLAKACAKAGGFPE 296

Query: 350 VEIVHYDPKAIGVDAKKAFPFRNMHFYAEPRAAKDILGWESKTNLPEDLKERYEEYVKIG 171
            EIVHY+PK      KKAFPFR+ HF+A    AK +LGW+ + +L E L + Y      G
Sbjct: 297 PEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRG 356

Query: 170 RDKKEMKFELDDKIL 126
             +KE  F  DD IL
Sbjct: 357 TFRKEADFTTDDMIL 371

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,062,034
Number of Sequences: 33410
Number of Extensions: 685062034
Number of Successful Extensions: 36828297
Number of sequences better than 0.0: 0