BLASTX 7.6.2
Query= UN00453 /QuerySize=1059
(1058 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17981380|gb|AAL50982.1|AF453323_1 zinc finger protein LSD2 [B... 343 4e-092
gi|17981378|gb|AAL50981.1|AF453322_1 zinc finger protein LSD1 [B... 315 7e-084
gi|301133570|gb|ADK63407.1| zinc finger protein [Brassica rapa] 315 1e-083
gi|30685085|ref|NP_849549.1| zinc finger protein LSD1 [Arabidops... 265 1e-068
gi|30685083|ref|NP_849548.1| zinc finger protein LSD1 [Arabidops... 253 4e-065
gi|227204487|dbj|BAH57095.1| AT4G20380 [Arabidopsis thaliana] 251 2e-064
gi|297804100|ref|XP_002869934.1| hypothetical protein ARALYDRAFT... 251 2e-064
gi|305387471|gb|ADM52200.1| zinc finger protein LSD1 [Pisum sati... 183 7e-044
gi|255641264|gb|ACU20909.1| unknown [Glycine max] 182 9e-044
gi|217075336|gb|ACJ86028.1| unknown [Medicago truncatula] 173 4e-041
gi|255578021|ref|XP_002529881.1| Charged multivesicular body pro... 172 1e-040
gi|170780164|gb|ACB37312.1| LSD1-like protein [Hordeum vulgare s... 172 1e-040
gi|224061463|ref|XP_002300492.1| predicted protein [Populus tric... 158 1e-036
gi|225444223|ref|XP_002276731.1| PREDICTED: hypothetical protein... 151 3e-034
gi|296089240|emb|CBI39012.3| unnamed protein product [Vitis vini... 151 3e-034
gi|32400832|gb|AAP80648.1|AF475127_1 18S subunit ribosomal prote... 146 6e-033
gi|238480867|ref|NP_001154257.1| zinc finger protein LSD1 [Arabi... 122 9e-026
>gi|17981380|gb|AAL50982.1|AF453323_1 zinc finger protein LSD2 [Brassica
oleracea]
Length = 193
Score = 343 bits (878), Expect = 4e-092
Identities = 162/198 (81%), Positives = 174/198 (87%), Gaps = 10/198 (5%)
Frame = +3
Query: 204 MQDQLVCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCG 383
MQDQL+CHGCRNTL+YPRGATNVRCALCNTINMVPL HPPPPP HHAH GMDMAHIVCG
Sbjct: 1 MQDQLMCHGCRNTLLYPRGATNVRCALCNTINMVPL--HPPPPPPHHAHAGMDMAHIVCG 58
Query: 384 GCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSVRCAV 563
GCRTMLMYTRGA+SVRCSCCQTVNLVPATPPTNQPAH++CGNCRTTLMYPYGAPSVRCAV
Sbjct: 59 GCRTMLMYTRGASSVRCSCCQTVNLVPATPPTNQPAHVNCGNCRTTLMYPYGAPSVRCAV 118
Query: 564 CQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRR----RNPMSVN 731
CQF TNVNMGNGRVPF TN PNGTA+SPG P S +T + P++ + NPMSVN
Sbjct: 119 CQFVTNVNMGNGRVPFPTNQPNGTASSPGPMP----STSTQSTPPSQTQTVVVENPMSVN 174
Query: 732 ESGKLVGNVVVGMTTDKK 785
ESGKLV NVVVG+TTDKK
Sbjct: 175 ESGKLVSNVVVGVTTDKK 192
>gi|17981378|gb|AAL50981.1|AF453322_1 zinc finger protein LSD1 [Brassica
oleracea]
Length = 193
Score = 315 bits (807), Expect = 7e-084
Identities = 151/197 (76%), Positives = 165/197 (83%), Gaps = 13/197 (6%)
Frame = +3
Query: 204 MQDQLVCHGCRNTLVYPRGATNVRCALCNTINMVPLHPH-PPPPPHHHAHVGMDMAHIVC 380
MQDQLVCHGCRNTL+YPRGATNVRCALC+ +NMVPLHPH PPPPP HHAH GMDMAHIVC
Sbjct: 1 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPHPPPPPPPHHAHAGMDMAHIVC 60
Query: 381 GGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSVRCA 560
GGCRTMLMYTRGA+SVRCSCCQTVNLVP PP+NQ AHI+CGNCRTTLMYPYGA SV+CA
Sbjct: 61 GGCRTMLMYTRGASSVRCSCCQTVNLVPGPPPSNQVAHINCGNCRTTLMYPYGASSVKCA 120
Query: 561 VCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRRR-----NPMS 725
VCQF TNVNM NGRVP +N PNGTAA PG+ P +T+ S P + + NPMS
Sbjct: 121 VCQFVTNVNMSNGRVPLASNRPNGTAA-PGTMP------STSTSTPPSQTQTVVVENPMS 173
Query: 726 VNESGKLVGNVVVGMTT 776
VNESGKLV NVVVG+TT
Sbjct: 174 VNESGKLVSNVVVGVTT 190
>gi|301133570|gb|ADK63407.1| zinc finger protein [Brassica rapa]
Length = 191
Score = 315 bits (805), Expect = 1e-083
Identities = 150/195 (76%), Positives = 165/195 (84%), Gaps = 11/195 (5%)
Frame = +3
Query: 204 MQDQLVCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCG 383
MQDQLVCHGCRNTL+YPRGATNVRCALC+ +NMVPLHPHPPPP HHAH GMDMAHIVCG
Sbjct: 1 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPHPPPP--HHAHAGMDMAHIVCG 58
Query: 384 GCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSVRCAV 563
GCRTMLMYTRGA+SVRCSCCQTVNLVP PP+NQ AHI+CGNCRTTLMYPYGA SV+CAV
Sbjct: 59 GCRTMLMYTRGASSVRCSCCQTVNLVPGPPPSNQVAHINCGNCRTTLMYPYGASSVKCAV 118
Query: 564 CQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRR----RNPMSVN 731
CQF TNVNM NGRVP +N PNGT ASPG+ P S +T + P++ + NPMSVN
Sbjct: 119 CQFVTNVNMSNGRVPLASNRPNGT-ASPGTMP----STSTQSTPPSQTQTVVVENPMSVN 173
Query: 732 ESGKLVGNVVVGMTT 776
ESGKLV NVVVG+TT
Sbjct: 174 ESGKLVSNVVVGVTT 188
>gi|30685085|ref|NP_849549.1| zinc finger protein LSD1 [Arabidopsis thaliana]
Length = 189
Score = 265 bits (675), Expect = 1e-068
Identities = 135/200 (67%), Positives = 148/200 (74%), Gaps = 22/200 (11%)
Frame = +3
Query: 192 KKGEMQDQLVCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAH 371
K +MQDQLVCHGCRN L+YPRGA+NVRCALCNTINMVP PPPPPH DMAH
Sbjct: 2 KVADMQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP----PPPPPH-------DMAH 50
Query: 372 IVCGGCRTMLMYTRGANSVRCSCCQTVNLVP------ATPPTNQPAHISCGNCRTTLMYP 533
I+CGGCRTMLMYTRGA+SVRCSCCQT NLVP A P++Q A I+CG+CRTTLMYP
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYP 110
Query: 534 YGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRRR 713
YGA SV+CAVCQF TNVNM NGRVP TN PNGTA P + S TV
Sbjct: 111 YGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVV-----VE 165
Query: 714 NPMSVNESGKLVGNVVVGMT 773
NPMSV+ESGKLV NVVVG+T
Sbjct: 166 NPMSVDESGKLVSNVVVGVT 185
>gi|30685083|ref|NP_849548.1| zinc finger protein LSD1 [Arabidopsis thaliana]
Length = 184
Score = 253 bits (645), Expect = 4e-065
Identities = 129/191 (67%), Positives = 141/191 (73%), Gaps = 22/191 (11%)
Frame = +3
Query: 219 VCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCGGCRTM 398
VCHGCRN L+YPRGA+NVRCALCNTINMVP PPPPPH DMAHI+CGGCRTM
Sbjct: 6 VCHGCRNLLMYPRGASNVRCALCNTINMVP----PPPPPH-------DMAHIICGGCRTM 54
Query: 399 LMYTRGANSVRCSCCQTVNLVP------ATPPTNQPAHISCGNCRTTLMYPYGAPSVRCA 560
LMYTRGA+SVRCSCCQT NLVP A P++Q A I+CG+CRTTLMYPYGA SV+CA
Sbjct: 55 LMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCA 114
Query: 561 VCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRRRNPMSVNESG 740
VCQF TNVNM NGRVP TN PNGTA P + S TV NPMSV+ESG
Sbjct: 115 VCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVV-----VENPMSVDESG 169
Query: 741 KLVGNVVVGMT 773
KLV NVVVG+T
Sbjct: 170 KLVSNVVVGVT 180
Score = 96 bits (236), Expect = 1e-017
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +3
Query: 372 IVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSV 551
+VC GCR +LMY RGA++VRC+ C T+N+VP PP + AHI CG CRT LMY GA SV
Sbjct: 5 LVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSV 64
Query: 552 RCAVCQ 569
RC+ CQ
Sbjct: 65 RCSCCQ 70
>gi|227204487|dbj|BAH57095.1| AT4G20380 [Arabidopsis thaliana]
Length = 218
Score = 251 bits (640), Expect = 2e-064
Identities = 128/188 (68%), Positives = 139/188 (73%), Gaps = 22/188 (11%)
Frame = +3
Query: 204 MQDQLVCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCG 383
MQDQLVCHGCRN L+YPRGA+NVRCALCNTINMVP PPPPPH DMAHI+CG
Sbjct: 6 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP----PPPPPH-------DMAHIICG 54
Query: 384 GCRTMLMYTRGANSVRCSCCQTVNLVP------ATPPTNQPAHISCGNCRTTLMYPYGAP 545
GCRTMLMYTRGA+SVRCSCCQT NLVP A P++Q A I+CG+CRTTLMYPYGA
Sbjct: 55 GCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGAS 114
Query: 546 SVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRRRNPMS 725
SV+CAVCQF TNVNM NGRVP TN PNGTA P + S TV NPMS
Sbjct: 115 SVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVV-----VENPMS 169
Query: 726 VNESGKLV 749
V+ESGKLV
Sbjct: 170 VDESGKLV 177
>gi|297804100|ref|XP_002869934.1| hypothetical protein ARALYDRAFT_492829
[Arabidopsis lyrata subsp. lyrata]
Length = 184
Score = 251 bits (640), Expect = 2e-064
Identities = 130/193 (67%), Positives = 143/193 (74%), Gaps = 26/193 (13%)
Frame = +3
Query: 219 VCHGCRNTLVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCGGCRTM 398
VCHGCRN L+YPRGA+NVRCALCNTINMVP PPPPPH DMAHI+CGGCRTM
Sbjct: 6 VCHGCRNLLMYPRGASNVRCALCNTINMVP----PPPPPH-------DMAHIICGGCRTM 54
Query: 399 LMYTRGANSVRCSCCQTVNLVP------ATPPTNQPAHISCGNCRTTLMYPYGAPSVRCA 560
LMYTRGA+SVRCSCCQT NLVP A P+NQ A I+CG+CRTTLMYPYGA SV+CA
Sbjct: 55 LMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSNQVAQINCGHCRTTLMYPYGASSVKCA 114
Query: 561 VCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYI--HSVNTTVSDPNRRRRNPMSVNE 734
VCQF TNVNM NGRVP TN PNG+A PG+ P T V + NPMSV+E
Sbjct: 115 VCQFVTNVNMSNGRVPLPTNRPNGSAC-PGTMPSSTPPSQTQTVVVE------NPMSVDE 167
Query: 735 SGKLVGNVVVGMT 773
SGKLV NVVVG+T
Sbjct: 168 SGKLVTNVVVGVT 180
Score = 96 bits (236), Expect = 1e-017
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +3
Query: 372 IVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSV 551
+VC GCR +LMY RGA++VRC+ C T+N+VP PP + AHI CG CRT LMY GA SV
Sbjct: 5 LVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSV 64
Query: 552 RCAVCQ 569
RC+ CQ
Sbjct: 65 RCSCCQ 70
>gi|305387471|gb|ADM52200.1| zinc finger protein LSD1 [Pisum sativum]
Length = 176
Score = 183 bits (462), Expect = 7e-044
Identities = 94/159 (59%), Positives = 110/159 (69%), Gaps = 21/159 (13%)
Frame = +3
Query: 321 PPPPPHHHAHVGMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHIS 500
P PPP GMDM+ + CGGCRT+LMYTRGA SVRCSCC TVNL P +NQ AH+
Sbjct: 33 PVPPP------GMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPV---SNQVAHVP 83
Query: 501 CGNCRTTLMYPYGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVN 680
C NCRTTLMYPYGAPSV+CAVC + TN+NM NGRVP N P GT + G+ P +
Sbjct: 84 CANCRTTLMYPYGAPSVKCAVCHYITNINMSNGRVPVPANRPQGT-TNLGTLP------S 136
Query: 681 TTVSDPNRRRR-----NPMSVNESGKLVGNVVVGMTTDK 782
T+ S P + + NPMSV+ SGKLV NVVVG+TTDK
Sbjct: 137 TSTSMPQSQGQTVVVENPMSVDSSGKLVSNVVVGVTTDK 175
>gi|255641264|gb|ACU20909.1| unknown [Glycine max]
Length = 177
Score = 182 bits (461), Expect = 9e-044
Identities = 93/157 (59%), Positives = 111/157 (70%), Gaps = 20/157 (12%)
Frame = +3
Query: 327 PPPHHHAHVGMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCG 506
PPP GM+M+ + CGGCRT+LMYTRGA SVRCSCC TVNLVP P +NQ AH+ CG
Sbjct: 35 PPP------GMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVP--PASNQVAHVHCG 86
Query: 507 NCRTTLMYPYGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTT 686
NCRTTLMYPYGAPSV+CA+C F TNV+ NGR+P + PNGT + G+ P T+
Sbjct: 87 NCRTTLMYPYGAPSVKCALCHFITNVSTNNGRLPIPVHRPNGT-TNAGTLP------TTS 139
Query: 687 VSDPNRRRR-----NPMSVNESGKLVGNVVVGMTTDK 782
S P + + NPMSV+ SGKLV NVVVG+TTDK
Sbjct: 140 TSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDK 176
>gi|217075336|gb|ACJ86028.1| unknown [Medicago truncatula]
Length = 176
Score = 173 bits (438), Expect = 4e-041
Identities = 90/157 (57%), Positives = 108/157 (68%), Gaps = 21/157 (13%)
Frame = +3
Query: 327 PPPHHHAHVGMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCG 506
PPP GMDM+ + CGGCRT+LMYTRGA SVRCSCC TVNL P +NQ AH+ CG
Sbjct: 35 PPP------GMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPV---SNQVAHVPCG 85
Query: 507 NCRTTLMYPYGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTT 686
N RTTLMYPYGAPSV+C VC + TN+NM NGR+P + P+GT S G P +T+
Sbjct: 86 NYRTTLMYPYGAPSVKCVVCHYITNINMSNGRLPIPGHRPHGTTDS-GMLP------STS 138
Query: 687 VSDPNRRRR-----NPMSVNESGKLVGNVVVGMTTDK 782
S P + + NPMSV+ SGKLV +VVVG+TTDK
Sbjct: 139 TSMPQSQSQTVVVENPMSVDSSGKLVSDVVVGVTTDK 175
>gi|255578021|ref|XP_002529881.1| Charged multivesicular body protein 2b-B,
putative [Ricinus communis]
Length = 405
Score = 172 bits (435), Expect = 1e-040
Identities = 95/197 (48%), Positives = 119/197 (60%), Gaps = 34/197 (17%)
Frame = +3
Query: 231 CRNTLVYPRGATNVRCALCNTINMVP-------------LHPHPPPPPHHHAHVGMDMAH 371
C ++ + P + C C +I + P + PPP GM+MA
Sbjct: 224 CVSSSIIPAMQGQIMCNGCRSILLYPRGAPNVCCALCSTITAAPPP--------GMEMAQ 275
Query: 372 IVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSV 551
++CGGCRT+LM+TRGA SVRCSCC TVNL P + Q AHI+C NCRTTL+YPYGAPSV
Sbjct: 276 LICGGCRTLLMHTRGATSVRCSCCHTVNLAPV---SGQAAHINCRNCRTTLVYPYGAPSV 332
Query: 552 RCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDPNRRR---RNPM 722
+CA+C + TNV+MGN RV TN PNGT G P S +T+ S + NPM
Sbjct: 333 KCALCHYVTNVSMGNVRVALPTNRPNGTT---GMTP----STSTSTSQSQTQTVVVENPM 385
Query: 723 SVNESGKLVGNVVVGMT 773
SV+ESGKLV NVVVG+T
Sbjct: 386 SVDESGKLVSNVVVGIT 402
>gi|170780164|gb|ACB37312.1| LSD1-like protein [Hordeum vulgare subsp. vulgare]
Length = 179
Score = 172 bits (434), Expect = 1e-040
Identities = 89/180 (49%), Positives = 113/180 (62%), Gaps = 20/180 (11%)
Frame = +3
Query: 243 LVYPRGATNVRCALCNTINMVPLHPHPPPPPHHHAHVGMDMAHIVCGGCRTMLMYTRGAN 422
L+YPRGA +V CA+C+ + P PP GM+MA ++C GCRT+LMYTR A
Sbjct: 14 LLYPRGAPSVCCAVCHAVTSAP----PP---------GMEMAQLICVGCRTLLMYTRNAT 60
Query: 423 SVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSVRCAVCQFATNVNMGNGR 602
+VRCSCC TVNL PP N AH++CG C+T LMYPYGA SV+CA+C F TN+ M R
Sbjct: 61 TVRCSCCDTVNLARPAPPVNSIAHVNCGQCQTVLMYPYGASSVKCAICNFITNIGMNTMR 120
Query: 603 -VPFLTNLPNGTAAS-PGSCPLYIHSVNTTVSDPNRRRRNPMSVNESGKLVGNVVVGMTT 776
+P + PNG + S P + S N TV NPM+V++ GKLV NVVVG+TT
Sbjct: 121 PLPATMHAPNGISYSVPSTSAPSTQSQNVTVV-----VENPMTVDDKGKLVSNVVVGVTT 175
>gi|224061463|ref|XP_002300492.1| predicted protein [Populus trichocarpa]
Length = 174
Score = 158 bits (399), Expect = 1e-036
Identities = 78/142 (54%), Positives = 96/142 (67%), Gaps = 9/142 (6%)
Frame = +3
Query: 354 GMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYP 533
GMDMA ++C GCR++LMY GA +VRCSCC VN+ P NQ AH++CGNCRT LMYP
Sbjct: 38 GMDMAQLICRGCRSLLMYPHGATTVRCSCCHVVNIAPG---YNQAAHVNCGNCRTALMYP 94
Query: 534 YGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYI-HSVNTTVSDPNRRR 710
G+PSV+C VC + TNV+M N R+P N PNG + S + + HS TV
Sbjct: 95 NGSPSVKCPVCHYVTNVSMANMRIPLPANRPNGIGGTAPSTSMPLPHSQTQTVV-----V 149
Query: 711 RNPMSVNESGKLVGNVVVGMTT 776
NPMSV+ESGKLV NVVVG+TT
Sbjct: 150 ENPMSVDESGKLVSNVVVGVTT 171
>gi|225444223|ref|XP_002276731.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 171
Score = 151 bits (379), Expect = 3e-034
Identities = 71/115 (61%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Frame = +3
Query: 354 GMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYP 533
G++MA ++CGGCRT+LMYTRGA SVRCSCC TVNL PA P+NQ AH++CGNCRTTLMYP
Sbjct: 38 GLEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPA--PSNQVAHVNCGNCRTTLMYP 95
Query: 534 YGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDP 698
YGAPSV+CAVC + T+V M N RVP + PN A S S P S V +P
Sbjct: 96 YGAPSVKCAVCHYVTSVGMVNVRVPIPVHRPNAAAIS-ASTPSTSSSQTVVVKNP 149
>gi|296089240|emb|CBI39012.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 151 bits (379), Expect = 3e-034
Identities = 71/115 (61%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Frame = +3
Query: 354 GMDMAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYP 533
G++MA ++CGGCRT+LMYTRGA SVRCSCC TVNL PA P+NQ AH++CGNCRTTLMYP
Sbjct: 126 GLEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPA--PSNQVAHVNCGNCRTTLMYP 183
Query: 534 YGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAASPGSCPLYIHSVNTTVSDP 698
YGAPSV+CAVC + T+V M N RVP + PN A S S P S V +P
Sbjct: 184 YGAPSVKCAVCHYVTSVGMVNVRVPIPVHRPNAAAIS-ASTPSTSSSQTVVVKNP 237
>gi|32400832|gb|AAP80648.1|AF475127_1 18S subunit ribosomal protein [Triticum
aestivum]
Length = 154
Score = 146 bits (368), Expect = 6e-033
Identities = 73/140 (52%), Positives = 92/140 (65%), Gaps = 7/140 (5%)
Frame = +3
Query: 363 MAHIVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGA 542
MA ++C GCRT+LMYTR A +VRCSCC TVNL PP N AH++CG C+T LMYPYGA
Sbjct: 16 MAQLICVGCRTLLMYTRNATTVRCSCCDTVNLARPAPPVNSIAHVNCGQCQTVLMYPYGA 75
Query: 543 PSVRCAVCQFATNVNMGNGR-VPFLTNLPNGTAAS-PGSCPLYIHSVNTTVSDPNRRRRN 716
SV+CA+C F TN+ M R +P + PNG + S P + S N TV N
Sbjct: 76 SSVKCAICNFITNIGMNTVRPLPPTMHAPNGISYSVPSTSAPSAQSQNVTVV-----VEN 130
Query: 717 PMSVNESGKLVGNVVVGMTT 776
PM+V++ GKLV NVVVG+T+
Sbjct: 131 PMTVDDKGKLVSNVVVGVTS 150
>gi|238480867|ref|NP_001154257.1| zinc finger protein LSD1 [Arabidopsis
thaliana]
Length = 210
Score = 122 bits (306), Expect = 9e-026
Identities = 64/103 (62%), Positives = 72/103 (69%), Gaps = 5/103 (4%)
Frame = +3
Query: 465 ATPPTNQPAHISCGNCRTTLMYPYGAPSVRCAVCQFATNVNMGNGRVPFLTNLPNGTAAS 644
A P++Q A I+CG+CRTTLMYPYGA SV+CAVCQF TNVNM NGRVP TN PNGTA
Sbjct: 109 AHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP 168
Query: 645 PGSCPLYIHSVNTTVSDPNRRRRNPMSVNESGKLVGNVVVGMT 773
P + S TV NPMSV+ESGKLV NVVVG+T
Sbjct: 169 PSTSTSTPPSQTQTVV-----VENPMSVDESGKLVSNVVVGVT 206
Score = 96 bits (236), Expect = 1e-017
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +3
Query: 372 IVCGGCRTMLMYTRGANSVRCSCCQTVNLVPATPPTNQPAHISCGNCRTTLMYPYGAPSV 551
+VC GCR +LMY RGA++VRC+ C T+N+VP PP + AHI CG CRT LMY GA SV
Sbjct: 5 LVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSV 64
Query: 552 RCAVCQ 569
RC+ CQ
Sbjct: 65 RCSCCQ 70
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,432,053,104
Number of Sequences: 15229318
Number of Extensions: 57432053104
Number of Successful Extensions: 34504562
Number of sequences better than 0.0: 0
|
