BLASTX 7.6.2
Query= UN00881 /QuerySize=948
(947 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297791713|ref|XP_002863741.1| hypothetical protein ARALYDRAFT... 166 6e-039
gi|15239590|ref|NP_197389.1| RNA-directed DNA polymerase (revers... 148 1e-033
gi|297819172|ref|XP_002877469.1| predicted protein [Arabidopsis ... 137 3e-030
gi|4678207|gb|AAD26953.1| putative non-LTR retrolelement reverse... 136 6e-030
gi|18412636|ref|NP_567266.1| RNA-directed DNA polymerase (revers... 130 4e-028
gi|91805567|gb|ABE65512.1| hypothetical protein At4g04650 [Arabi... 130 4e-028
gi|116830571|gb|ABK28243.1| unknown [Arabidopsis thaliana] 130 4e-028
gi|4539462|emb|CAB39942.1| putative protein [Arabidopsis thaliana] 129 6e-028
gi|3461840|gb|AAC33226.1| putative non-LTR retroelement reverse ... 129 8e-028
gi|4512630|gb|AAD21699.1| Contains reverse transcriptase domain ... 128 2e-027
gi|12321503|gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsi... 125 1e-026
gi|9758853|dbj|BAB09379.1| non-LTR retroelement reverse transcri... 122 1e-025
gi|15218474|ref|NP_175039.1| RNA-directed DNA polymerase (revers... 121 2e-025
gi|4760708|dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa] 119 8e-025
gi|15219801|ref|NP_176271.1| RNA-directed DNA polymerase (revers... 117 2e-024
gi|8843742|dbj|BAA97290.1| non-LTR retroelement reverse transcri... 116 7e-024
gi|110739557|dbj|BAF01687.1| hypothetical protein [Arabidopsis t... 116 7e-024
gi|3785984|gb|AAC67331.1| putative non-LTR retroelement reverse ... 113 6e-023
gi|15217619|ref|NP_174632.1| RNA-directed DNA polymerase (revers... 108 1e-021
gi|15226989|ref|NP_178356.1| RNA-directed DNA polymerase (revers... 105 2e-020
>gi|297791713|ref|XP_002863741.1| hypothetical protein ARALYDRAFT_917455
[Arabidopsis lyrata subsp. lyrata]
Length = 390
Score = 166 bits (419), Expect = 6e-039
Identities = 80/156 (51%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Frame = +1
Query: 268 RGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWG 447
+G+PK +FLT L+VLNRCPT+DR+LGWGL T P CLL N++ ESRDH++F C+ + W
Sbjct: 236 QGVPKRSFLTSLLVLNRCPTRDRLLGWGLQTDPSCLLYNTSPESRDHIFFNCNVA---WS 292
Query: 448 SLAMRARSTPITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRS 627
S+A R P SW + MQ L G K L L LAWQS++Y IW ERN+RLHR F+S
Sbjct: 293 SIASRCSLLPHRSWDASLCQMQDLHGSKLLIRLTRLAWQSSLYLIWAERNNRLHRNNFKS 352
Query: 628 SDLIVSAATSLIKNRISSLRLSSPSLSSKMMQVWLS 735
+D ++ S I+NRI S R + S+SS M+Q+W S
Sbjct: 353 ADSLIRLIDSTIRNRILSYRDHNSSVSSSMLQLWFS 388
>gi|15239590|ref|NP_197389.1| RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis thaliana]
Length = 295
Score = 148 bits (373), Expect = 1e-033
Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 13/240 (5%)
Frame = +1
Query: 16 LGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTIAL------TLEEDKFVWA-PDG 174
L IR DA + RNG+W LP+ RS+ N Q++L + + + +D F+W G
Sbjct: 47 LRIRQDARVVEASRNGDWFLPAARSD---NSQLFLAALTMAPVPHESRGQDSFLWRNAAG 103
Query: 175 KELSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGL 354
L ++S+ + I+ H P VPWA VW IP+ + +TW+ L R PT+DR+ GWG+
Sbjct: 104 SYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGM 163
Query: 355 TTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKH 534
+LC++ +E+ HL+F CSFS +IW A + R +P P + + QL H
Sbjct: 164 NIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGLPAASSWILQLPLRSH 223
Query: 535 LRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRI---SSLRLSSPSL 705
+ L QSA+Y +W ERN+R+ S+ + A ++NR+ S L SPSL
Sbjct: 224 STTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNRLLSFPSADLRSPSL 283
>gi|297819172|ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 328
Score = 137 bits (344), Expect = 3e-030
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 5/192 (2%)
Frame = +1
Query: 10 TALGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTIALTLEEDKFVWAPDGKELST 189
T LGI + ++ + W LP+ RSE Q+ L +++TI+++ D VWA DG
Sbjct: 120 THLGISLFSTVAELRIEDGWSLPNARSEKQVLLHSFISTISISSSNDTLVWAVDGIPYKH 179
Query: 190 YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPL 369
+S+ V+N ++ +PV WA VW IP+H +WL +LNR PT DR+ WG
Sbjct: 180 FSSKAVWNAVRISKPVNYWAPLVWHKAAIPRHVITSWLFILNRNPTLDRLSSWGYDVELD 239
Query: 370 CLLCNSANESRDHLYFTCSFSASIWGSLAMRAR--STPITSWPQVINHMQQLTGPKHLRI 543
CLLC A+ESR+HL+F C FS +W + R S+P+ W Q++ + ++ +I
Sbjct: 240 CLLCGLAHESRNHLFFNCVFSVEVWRLITQRLHISSSPLL-WDQILLWLPTTLVSRN-KI 297
Query: 544 LALL-AWQSAIY 576
LALL WQ AIY
Sbjct: 298 LALLQGWQGAIY 309
>gi|4678207|gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase
[Arabidopsis thaliana]
Length = 323
Score = 136 bits (341), Expect = 6e-030
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 8/245 (3%)
Frame = +1
Query: 19 GIRHDAILSTIYRNGNWQLPSPRS-EPQLNLQVYLTTIALTL----EEDKFVWAPDGKEL 183
G+ +A++ R NW L S RS P + L + + ++ +D + W PD
Sbjct: 73 GMPLNAVVRDALRGDNWWLSSSRSRNPSIALLKSVLPSSESMIECQHDDVYKWKPDHHAP 132
Query: 184 ST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
S +S + + + +VPW VW IPKH F+ W+ R T+DR+ WGL
Sbjct: 133 SNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNI 192
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLR 540
+C+LCN +E+ DHL+F C FS IW +RA TP + ++ ++ + K+L
Sbjct: 193 PTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMTPPHLFGPILLWLKSASSSKNLS 252
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSSP-SLS-SK 714
++ L +Q+++Y IW ERN R+H R+ I+ LI+ R+ + P LS S
Sbjct: 253 LIIKLLFQASVYLIWRERNCRIHTTHSRTPPTIIKEVQQLIRARLDPICRERPVGLSRSS 312
Query: 715 MMQVW 729
++ W
Sbjct: 313 LLATW 317
>gi|18412636|ref|NP_567266.1| RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis thaliana]
Length = 332
Score = 130 bits (326), Expect = 4e-028
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
Frame = +1
Query: 19 GIRHDAILSTIYRNGNWQLPSPRSEPQL-----NLQVYLTTIALTLEEDKFVWAPDGKEL 183
G+ DA++ R +W + S RS + NL + +D F+W D
Sbjct: 48 GLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAP 107
Query: 184 ST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
S +S + ++ + VPW VW +PKH F+ W+V NR T+DR+ WGL+
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLR 540
CLLCN+ ++SR HL+F C FS +W P +N + + K++
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSPSREKNIC 227
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSS 696
++ LA+ S +Y IW ERN RLH RS++ I+ +I+ R+ L S+
Sbjct: 228 LIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRST 279
>gi|91805567|gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis
thaliana]
Length = 296
Score = 130 bits (326), Expect = 4e-028
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
Frame = +1
Query: 19 GIRHDAILSTIYRNGNWQLPSPRSEPQL-----NLQVYLTTIALTLEEDKFVWAPDGKEL 183
G+ DA++ R +W + S RS + NL + +D F+W D
Sbjct: 48 GLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAP 107
Query: 184 ST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
S +S + ++ + VPW VW +PKH F+ W+V NR T+DR+ WGL+
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLR 540
CLLCN+ ++SR HL+F C FS +W P +N + + K++
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSPSREKNIC 227
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSS 696
++ LA+ S +Y IW ERN RLH RS++ I+ +I+ R+ L S+
Sbjct: 228 LIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRST 279
>gi|116830571|gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 130 bits (326), Expect = 4e-028
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
Frame = +1
Query: 19 GIRHDAILSTIYRNGNWQLPSPRSEPQL-----NLQVYLTTIALTLEEDKFVWAPDGKEL 183
G+ DA++ R +W + S RS + NL + +D F+W D
Sbjct: 48 GLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAP 107
Query: 184 ST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
S +S + ++ + VPW VW +PKH F+ W+V NR T+DR+ WGL+
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLR 540
CLLCN+ ++SR HL+F C FS +W P +N + + K++
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSPSREKNIC 227
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSS 696
++ LA+ S +Y IW ERN RLH RS++ I+ +I+ R+ L S+
Sbjct: 228 LIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRST 279
>gi|4539462|emb|CAB39942.1| putative protein [Arabidopsis thaliana]
Length = 473
Score = 129 bits (324), Expect = 6e-028
Identities = 71/198 (35%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Frame = +1
Query: 145 EDKFVW-APDGKELSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRC 321
ED+ +W + + S +ST +N I+T V W VW + IPKH F WL V NR
Sbjct: 271 EDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRL 330
Query: 322 PTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPI-TSWPQV 498
T DR+ W + C+LCN A ESRDHL+F+C F+ IW LA +T T W +
Sbjct: 331 STGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDWQTI 390
Query: 499 INHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRIS 678
IN++ + + LA Q IY +W ERN R H SS ++S I+N +
Sbjct: 391 INNVSRNWPDRIAGFLARCILQVTIYTLWRERNERKHGASPNSSSRLISWIDKHIRNHLM 450
Query: 679 SLRLSSPSLSSKMMQVWL 732
+++ S + QVWL
Sbjct: 451 AIKQSGDRRFDRGFQVWL 468
>gi|3461840|gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana]
Length = 1529
Score = 129 bits (323), Expect = 8e-028
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 1/183 (0%)
Frame = +1
Query: 190 YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPL 369
+ T +N ++THQP W VW P PK++FL WL V NR T DRI W
Sbjct: 1336 FITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVT 1395
Query: 370 CLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPIT-SWPQVINHMQQLTGPKHLRIL 546
C LCN+A E+RDHL+F+C +++ +W +L R ST + W ++ + P+ L
Sbjct: 1396 CTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRDHLFL 1455
Query: 547 ALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSSPSLSSKMMQV 726
+Q++IY IW ERN+R H + ++ ++ ++NRISS+R + + MQ+
Sbjct: 1456 FRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRISSIRDTGDHNYNDCMQL 1515
Query: 727 WLS 735
W S
Sbjct: 1516 WFS 1518
>gi|4512630|gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078
[Arabidopsis thaliana]
Length = 1253
Score = 128 bits (320), Expect = 2e-027
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 6/192 (3%)
Frame = +1
Query: 67 WQLPSPRSEPQLNLQVYLTTIALTL---EEDKFVWAPDGKELSTYSTGQVYNLIKTHQPV 237
W + PR++ L L ++LTTIAL D FVW D +S + + ++ +PV
Sbjct: 860 WLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPV 919
Query: 238 VPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYF 417
W VW +PKH F W+ LNR PT+ R+ WG+TT+ C LC+S ESRDHL
Sbjct: 920 KDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLL 979
Query: 418 TCSFSASIWGSLAMRARSTP--ITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWME 591
C FSA IW + R + SW ++++ ++ K +L +A Q++++ +W +
Sbjct: 980 YCVFSAVIWKLVFFRLTPSQAIFNSWAELLS-WTRINSSKAPSLLRKIAAQASVFHLWKQ 1038
Query: 592 RNSRLHRQQFRS 627
RN+ LH F S
Sbjct: 1039 RNNVLHNSIFIS 1050
>gi|12321503|gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 125 bits (313), Expect = 1e-026
Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 9/239 (3%)
Frame = +1
Query: 34 AILSTIYRNGNWQLPSPRSEPQLNLQVYLTTIAL--TLEE--DKFVWAPDGKELSTYSTG 201
A +++ + W+LP RS P + +L T+ + T +E D++ W+ +G +S
Sbjct: 977 AKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAA 1036
Query: 202 QVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLC 381
+ + I+ V WA+ +W +PK+ F W+ LNR T+ R+ WG S C+LC
Sbjct: 1037 KTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLC 1096
Query: 382 NSANESRDHLYFTCSFSASIWGSLAMR--ARSTPITSWPQVINHMQQLTGPKHLRILALL 555
+ A+ESRDHL C FSA +W + R R +SW ++++ ++Q + P+ +L +
Sbjct: 1097 SFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQ-SSPEAPPLLRKI 1155
Query: 556 AWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSSPSLSSKMMQVWL 732
Q +Y +W +RN+ LH + +I I+N ISS RL K+M +W+
Sbjct: 1156 VSQVVVYNLWRQRNNLLHNSLRLAPAVIFKLVDREIRNIISSRRLR--KRWRKLMLLWI 1212
>gi|9758853|dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like
protein [Arabidopsis thaliana]
Length = 1223
Score = 122 bits (305), Expect = 1e-025
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Frame = +1
Query: 136 TLEEDKFVWAPDGKE---LSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLV 306
T EDK +W GK +T+ST ++ ++ VPW +W PK++F +WL
Sbjct: 1019 TETEDKVLWR--GKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLA 1076
Query: 307 VLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITS 486
R PT DR++ W + C+ C E+RDHL+FTCSF++ IW LA T TS
Sbjct: 1077 AHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTS 1136
Query: 487 -WPQVINHMQQLTGPKHLRI---LALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAAT 654
W +I + +T +H R+ L +Q+ IY +W ERN R H + ++ +V
Sbjct: 1137 HWQSII---EAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWID 1193
Query: 655 SLIKNRISSLRLSSPSLSSKMMQVW 729
I+N++SS+ L +QVW
Sbjct: 1194 KQIRNQLSSICLKGDKRYDGSLQVW 1218
>gi|15218474|ref|NP_175039.1| RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis thaliana]
Length = 320
Score = 121 bits (302), Expect = 2e-025
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Frame = +1
Query: 145 EDKFVWAPDGKELST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRC 321
+D F+W D S +ST + + +VPW VW +PKH F+ W+V NR
Sbjct: 117 DDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRL 176
Query: 322 PTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVI 501
T+DR+ WGL+ +CLLCNS +ESR HL+F C F ++W RA P +
Sbjct: 177 HTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWRFFTGRANLFPPAQLMYCL 236
Query: 502 NHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIK----- 666
+ + K+ ++ LA+Q+ +Y IW ERN LH R D ++ I+
Sbjct: 237 IWLLNPSRDKNTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRARLDP 296
Query: 667 -NRISSLRLSSPSLSSKMMQVWLS 735
+RI+ L S+PS +++ W S
Sbjct: 297 ISRITELHPSAPS----VLRTWFS 316
>gi|4760708|dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa]
Length = 255
Score = 119 bits (297), Expect = 8e-025
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Frame = +1
Query: 16 LGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTIALTLEE---DKFVW--APDGKE 180
L I +A ++ +NG+W LP RSE LQ+ L+TI + D F W P G
Sbjct: 47 LRIPLNASVADAVQNGHWYLPPARSEFAETLQIILSTITPPTDNNDIDIFYWRGGPTGGF 106
Query: 181 LSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
+ +S+ + L+ P V W + V +P+ F+TWL +L R PT+DR++ WGLT
Sbjct: 107 TNKFSSKVTWELLCVPSPEVTWHSTVGFKEEVPRCTFITWLAMLERLPTRDRLISWGLTV 166
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGP 528
C+LCN ES HL+F CSF+ +W R+ ++P V+ + QQL GP
Sbjct: 167 PNSCVLCNGGVESHSHLFFECSFAVGVWLHFCGRSMTSPPPDLQTVVAYCQQLHGP 222
>gi|15219801|ref|NP_176271.1| RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 117 bits (293), Expect = 2e-024
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Frame = +1
Query: 67 WQLPSPRSEPQLNLQVYLTTIAL---TLEEDKFVWAPDGKELSTYSTGQVYNLIKTHQPV 237
W+LP RS P + +++TI ED F W G +S+ + ++ I+ P
Sbjct: 65 WKLPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPE 124
Query: 238 VPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYF 417
+ WA VW +PKH F W+ L+R PT+ R+ WG S C LC ESRDHL F
Sbjct: 125 LDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLF 184
Query: 418 TCSFSASIWGSLAMR--ARSTPITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWME 591
+C F+A +W R R SW ++++ M+ + +L ++ + IY IW +
Sbjct: 185 SCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWMRS-SSSSAPSLLRKVSAHAIIYNIWRQ 243
Query: 592 RNSRLHRQQFRSSDLIVSAATSLIKNRISS 681
RN+ LH + +I I+N ISS
Sbjct: 244 RNNVLHNNLRIAPIIIFKIVDREIRNIISS 273
>gi|8843742|dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like
[Arabidopsis thaliana]
Length = 1072
Score = 116 bits (289), Expect = 7e-024
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Frame = +1
Query: 16 LGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTI---ALTLEEDKFVWAPDGKELS 186
L I A ++ W+LP RS ++ +L ++ + + D + W D +
Sbjct: 831 LRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQ 890
Query: 187 TYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSP 366
+S + + +++ +PV WA VW +PKH F W LNR PT+ R++ WGL +S
Sbjct: 891 GFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSA 950
Query: 367 LCLLCNSANESRDHLYFTCSFSASIWGSLAMR--ARSTPITSWPQVINHMQQLTGPKHLR 540
C LC+ E+RDHL C FS+ +W + +R R + +W ++++ +Q T
Sbjct: 951 ECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL 1010
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLR 687
+ ++A Q +Y +W +RN LH S ++ ++N I S R
Sbjct: 1011 LRKVVA-QLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILSRR 1058
>gi|110739557|dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 116 bits (289), Expect = 7e-024
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Frame = +1
Query: 16 LGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTI---ALTLEEDKFVWAPDGKELS 186
L I A ++ W+LP RS ++ +L ++ + + D + W D +
Sbjct: 831 LRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQ 890
Query: 187 TYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSP 366
+S + + +++ +PV WA VW +PKH F W LNR PT+ R++ WGL +S
Sbjct: 891 GFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSA 950
Query: 367 LCLLCNSANESRDHLYFTCSFSASIWGSLAMR--ARSTPITSWPQVINHMQQLTGPKHLR 540
C LC+ E+RDHL C FS+ +W + +R R + +W ++++ +Q T
Sbjct: 951 ECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL 1010
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLR 687
+ ++A Q +Y +W +RN LH S ++ ++N I S R
Sbjct: 1011 LRKVVA-QLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILSRR 1058
>gi|3785984|gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana]
Length = 1449
Score = 113 bits (281), Expect = 6e-023
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Frame = +1
Query: 190 YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPL 369
+ST + +N +T VPW VW PK +F WL V +R T D++L W
Sbjct: 1264 FSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGT 1323
Query: 370 CLLCNSANESRDHLYFTCSFSASIWGSLAMRA-RSTPITSWPQVINHMQQLTGPKHLRIL 546
CLLC +A ESRDHL+F+CSFS+ +W A +S+ T W ++ +Q+ + +
Sbjct: 1324 CLLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYSTDWRHLLTKIQENWKDRVESFI 1383
Query: 547 ALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSSPSLSSKMMQV 726
A +Q ++Y IW ERN R H + + +V I++++S+++L + Q
Sbjct: 1384 ARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIRDQLSAIKLMGDRRYDQGFQF 1443
Query: 727 WL 732
WL
Sbjct: 1444 WL 1445
>gi|15217619|ref|NP_174632.1| RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis thaliana]
Length = 210
Score = 108 bits (269), Expect = 1e-021
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Frame = +1
Query: 133 LTLEEDKFVWAPDGKELSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVL 312
L+ E D + W + K + +S+ + + ++ VV WA VW PKH F W+ L
Sbjct: 11 LSGELDVYDWVVEDKLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMWVTNL 70
Query: 313 NRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWP 492
+R PTK R+ WG+ C LC+ E RDHL+ TC F+ +W ++++R P S+
Sbjct: 71 DRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRL-ELPAFSF- 128
Query: 493 QVINHMQQLTGPKHLR---ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLI 663
V N + T ++ R L L QS +Y IW +RN+ LH + ++ I
Sbjct: 129 VVWNDLMDWTLQRNRRSPPTLRKLIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREI 188
Query: 664 KNRISSLRLSSPSLSSKMMQVWL 732
KN I++ RL ++M +WL
Sbjct: 189 KNSITARRLK--KRFRRLMTLWL 209
>gi|15226989|ref|NP_178356.1| RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis thaliana]
Length = 211
Score = 105 bits (260), Expect = 2e-020
Identities = 48/149 (32%), Positives = 78/149 (52%)
Frame = +1
Query: 238 VPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYF 417
V W +W IPKH F+ W+ + +R TKDR++ WG PLCL CN+ +E+R HL+F
Sbjct: 41 VDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFF 100
Query: 418 TCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWMERN 597
C F+ +W R P + I ++ K++ + L+ +++Y IW ERN
Sbjct: 101 DCEFAREVWIYFTSRVHVFPPLLFEDGIRWLKNPCQDKNVTTILRLSHHASVYTIWKERN 160
Query: 598 SRLHRQQFRSSDLIVSAATSLIKNRISSL 684
+RLH R + ++ S+I+ + L
Sbjct: 161 ARLHDSASRPAAALILEIKSVIRCHLDPL 189
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,799,217,932
Number of Sequences: 15229318
Number of Extensions: 172799217932
Number of Successful Extensions: 62121603
Number of sequences better than 0.0: 0
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