BLASTX 7.6.2
Query= UN00881 /QuerySize=948
(947 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G18880.1 | Symbols: | FUNCTIONS IN: molecular... 148 5e-036
TAIR9_protein||AT4G04650.1 | Symbols: | FUNCTIONS IN: molecular... 130 1e-030
TAIR9_protein||AT1G43730.1 | Symbols: | FUNCTIONS IN: molecular... 121 9e-028
TAIR9_protein||AT1G60720.1 | Symbols: | FUNCTIONS IN: molecular... 117 9e-027
TAIR9_protein||AT1G33710.1 | Symbols: | FUNCTIONS IN: molecular... 108 6e-024
TAIR9_protein||AT2G02520.1 | Symbols: | FUNCTIONS IN: molecular... 105 6e-023
TAIR9_protein||AT5G16486.1 | Symbols: | FUNCTIONS IN: molecular... 89 5e-018
TAIR9_protein||AT4G10613.1 | Symbols: | CONTAINS InterPro DOMAI... 87 2e-017
TAIR9_protein||AT1G45063.1 | Symbols: | copper ion binding / el... 80 1e-015
TAIR9_protein||AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular... 73 2e-013
TAIR9_protein||AT3G25720.1 | Symbols: | FUNCTIONS IN: molecular... 70 1e-012
>TAIR9_protein||AT5G18880.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6300535-6301422
REVERSE
Length = 296
Score = 148 bits (373), Expect = 5e-036
Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 13/240 (5%)
Frame = +1
Query: 16 LGIRHDAILSTIYRNGNWQLPSPRSEPQLNLQVYLTTIAL------TLEEDKFVWA-PDG 174
L IR DA + RNG+W LP+ RS+ N Q++L + + + +D F+W G
Sbjct: 47 LRIRQDARVVEASRNGDWFLPAARSD---NSQLFLAALTMAPVPHESRGQDSFLWRNAAG 103
Query: 175 KELSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGL 354
L ++S+ + I+ H P VPWA VW IP+ + +TW+ L R PT+DR+ GWG+
Sbjct: 104 SYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGM 163
Query: 355 TTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKH 534
+LC++ +E+ HL+F CSFS +IW A + R +P P + + QL H
Sbjct: 164 NIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGLPAASSWILQLPLRSH 223
Query: 535 LRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRI---SSLRLSSPSL 705
+ L QSA+Y +W ERN+R+ S+ + A ++NR+ S L SPSL
Sbjct: 224 STTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNRLLSFPSADLRSPSL 283
>TAIR9_protein||AT4G04650.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to cold; LOCATED IN: stromule; CONTAINS
InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G43730.1); Has 608 Blast hits to 598
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr4:2353989-2355213 REVERSE
Length = 333
Score = 130 bits (326), Expect = 1e-030
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
Frame = +1
Query: 19 GIRHDAILSTIYRNGNWQLPSPRSEPQL-----NLQVYLTTIALTLEEDKFVWAPDGKEL 183
G+ DA++ R +W + S RS + NL + +D F+W D
Sbjct: 48 GLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAP 107
Query: 184 ST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTT 360
S +S + ++ + VPW VW +PKH F+ W+V NR T+DR+ WGL+
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167
Query: 361 SPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLR 540
CLLCN+ ++SR HL+F C FS +W P +N + + K++
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSPSREKNIC 227
Query: 541 ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLRLSS 696
++ LA+ S +Y IW ERN RLH RS++ I+ +I+ R+ L S+
Sbjct: 228 LIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRST 279
>TAIR9_protein||AT1G43730.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G04650.1); Has 562 Blast hits to 549 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:16508723-16509784 REVERSE
Length = 321
Score = 121 bits (302), Expect = 9e-028
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Frame = +1
Query: 145 EDKFVWAPDGKELST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVLNRC 321
+D F+W D S +ST + + +VPW VW +PKH F+ W+V NR
Sbjct: 117 DDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRL 176
Query: 322 PTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWPQVI 501
T+DR+ WGL+ +CLLCNS +ESR HL+F C F ++W RA P +
Sbjct: 177 HTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWRFFTGRANLFPPAQLMYCL 236
Query: 502 NHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIK----- 666
+ + K+ ++ LA+Q+ +Y IW ERN LH R D ++ I+
Sbjct: 237 IWLLNPSRDKNTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRARLDP 296
Query: 667 -NRISSLRLSSPSLSSKMMQVWLS 735
+RI+ L S+PS +++ W S
Sbjct: 297 ISRITELHPSAPS----VLRTWFS 316
>TAIR9_protein||AT1G60720.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro
DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related
(InterPro:IPR015706); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:22357072-22357941 FORWARD
Length = 290
Score = 117 bits (293), Expect = 9e-027
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Frame = +1
Query: 67 WQLPSPRSEPQLNLQVYLTTIAL---TLEEDKFVWAPDGKELSTYSTGQVYNLIKTHQPV 237
W+LP RS P + +++TI ED F W G +S+ + ++ I+ P
Sbjct: 65 WKLPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPE 124
Query: 238 VPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYF 417
+ WA VW +PKH F W+ L+R PT+ R+ WG S C LC ESRDHL F
Sbjct: 125 LDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLF 184
Query: 418 TCSFSASIWGSLAMR--ARSTPITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWME 591
+C F+A +W R R SW ++++ M+ + +L ++ + IY IW +
Sbjct: 185 SCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWMRS-SSSSAPSLLRKVSAHAIIYNIWRQ 243
Query: 592 RNSRLHRQQFRSSDLIVSAATSLIKNRISS 681
RN+ LH + +I I+N ISS
Sbjct: 244 RNNVLHNNLRIAPIIIFKIVDREIRNIISS 273
>TAIR9_protein||AT1G33710.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G60720.1); Has 337 Blast hits to 335 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:12219657-12220289 FORWARD
Length = 211
Score = 108 bits (269), Expect = 6e-024
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Frame = +1
Query: 133 LTLEEDKFVWAPDGKELSTYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVVL 312
L+ E D + W + K + +S+ + + ++ VV WA VW PKH F W+ L
Sbjct: 11 LSGELDVYDWVVEDKLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMWVTNL 70
Query: 313 NRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWP 492
+R PTK R+ WG+ C LC+ E RDHL+ TC F+ +W ++++R P S+
Sbjct: 71 DRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRL-ELPAFSF- 128
Query: 493 QVINHMQQLTGPKHLR---ILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLI 663
V N + T ++ R L L QS +Y IW +RN+ LH + ++ I
Sbjct: 129 VVWNDLMDWTLQRNRRSPPTLRKLIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREI 188
Query: 664 KNRISSLRLSSPSLSSKMMQVWL 732
KN I++ RL ++M +WL
Sbjct: 189 KNSITARRLK--KRFRRLMTLWL 209
>TAIR9_protein||AT2G02520.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: leaf whorl, stamen, leaf;
EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: RNA-directed DNA
polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G43730.1); Has 338 Blast hits to 336 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:676771-678145
REVERSE
Length = 212
Score = 105 bits (260), Expect = 6e-023
Identities = 48/149 (32%), Positives = 78/149 (52%)
Frame = +1
Query: 238 VPWAACVWSPRGIPKHNFLTWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYF 417
V W +W IPKH F+ W+ + +R TKDR++ WG PLCL CN+ +E+R HL+F
Sbjct: 41 VDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFF 100
Query: 418 TCSFSASIWGSLAMRARSTPITSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWMERN 597
C F+ +W R P + I ++ K++ + L+ +++Y IW ERN
Sbjct: 101 DCEFAREVWIYFTSRVHVFPPLLFEDGIRWLKNPCQDKNVTTILRLSHHASVYTIWKERN 160
Query: 598 SRLHRQQFRSSDLIVSAATSLIKNRISSL 684
+RLH R + ++ S+I+ + L
Sbjct: 161 ARLHDSASRPAAALILEIKSVIRCHLDPL 189
>TAIR9_protein||AT5G16486.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G04650.1); Has 335 Blast hits to 332 proteins in 14 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5383597-5384226
REVERSE
Length = 210
Score = 89 bits (218), Expect = 5e-018
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 118 LTTIALTLEEDKFVWAPDGKELST-YSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFL 294
+ + + E+D F+W G E S +S+ + + V W +W IPKH F+
Sbjct: 101 VVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEKVDWHKAIWFKGRIPKHAFI 160
Query: 295 TWLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASI 441
+W+ + +R PT+D++L WGL LCLLCN+ +E+R HL+F C F+ I
Sbjct: 161 SWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDCVFAGEI 209
>TAIR9_protein||AT4G10613.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase), related
(InterPro:IPR015706); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G33710.1); Has 210 Blast hits to 210 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr4:6561039-6561479 FORWARD
Length = 147
Score = 87 bits (213), Expect = 2e-017
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Frame = +1
Query: 298 WLVVLNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTP 477
W+ L+R PT+ R++ WGL SPLC LC+ + E+RDHL TC FS+SIW + R R P
Sbjct: 2 WISNLDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARLRLQP 61
Query: 478 I--TSWPQVINHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAA 651
+ W +++ ++ T I L+A Q+ + IW +RN+ LH Q +I
Sbjct: 62 VQFRVWESLLSWIKLSTASSPSIIRKLVA-QATVCAIWKQRNNLLHNLQDILPSIIFKNI 120
Query: 652 TSLIKNRISSLRLSSPSLSSKMMQVWL 732
I N I++ R S +M++W+
Sbjct: 121 DREIINSINA-RCHRRKFRS-LMRLWI 145
>TAIR9_protein||AT1G45063.1 | Symbols: | copper ion binding / electron carrier
| chr1:17033335-17034886 REVERSE
Length = 370
Score = 80 bits (197), Expect = 1e-015
Identities = 36/99 (36%), Positives = 54/99 (54%)
Frame = +1
Query: 313 NRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRARSTPITSWP 492
NR DR + WG+ LCLLCN+ +E+R H++F C FS +W AR TP +
Sbjct: 265 NRLHICDRFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVTPPRMFK 324
Query: 493 QVINHMQQLTGPKHLRILALLAWQSAIYFIWMERNSRLH 609
++ K + + LA+Q+++Y IW ERN RL+
Sbjct: 325 DSARWLRHPCRDKKVAFILKLAYQASVYHIWRERNIRLN 363
>TAIR9_protein||AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G23910.1); Has 2302 Blast hits to 2235 proteins in 74 species:
Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12; Plants - 1295;
Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). |
chr3:8789471-8793208 FORWARD
Length = 747
Score = 73 bits (178), Expect = 2e-013
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 133 LTLEEDKFVWAPDGKELS-TYSTGQVYNLIKTHQPVVPWAACVWSPRGIPKHNFLTWLVV 309
LT ED W +G ++T + + + + V W VW PK++ L W+ +
Sbjct: 246 LTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAI 305
Query: 310 LNRCPTKDRILGWGLTTSPLCLLCNSANESRDHLYFTCSFSASI 441
NR T DR+L W C+LC+ E+RDHL+FTC +SA +
Sbjct: 306 KNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV 349
>TAIR9_protein||AT3G25720.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G10613.1); Has 363 Blast hits to 328 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9380234-9381405
FORWARD
Length = 283
Score = 70 bits (171), Expect = 1e-012
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Frame = +1
Query: 340 LGWGLTTSPLCLLCNSANESRDHLYFTCSFSASIWGSLAMRAR--STPITSWPQVINHMQ 513
+ WGL SPLC LC+ A E+RDHL CSFS ++W S+ R R S +W +++ ++
Sbjct: 152 ISWGLPVSPLCCLCSCAPETRDHLLLGCSFSKALWSSVQSRLRLHSLIFLNWAELLLWIR 211
Query: 514 Q--LTGPKHLRILALLAWQSAIYFIWMERNSRLHRQQFRSSDLIVSAATSLIKNRISSLR 687
+ + P LR L S +Y W +RN+ LH + I N I++ R
Sbjct: 212 RSSTSAPSTLRKLVA---HSVVYATWKQRNNMLHNSHHLDPASVFKIIDRKIINSINARR 268
Query: 688 LSSPSLSSKMMQVWL 732
+M WL
Sbjct: 269 --HKKKFRNLMSFWL 281
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,217,863,881
Number of Sequences: 33410
Number of Extensions: 1217863881
Number of Successful Extensions: 47965272
Number of sequences better than 0.0: 0
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