BLASTX 7.6.2
Query= UN01043 /QuerySize=754
(753 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 201 8e-050
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 197 2e-048
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 197 2e-048
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 176 3e-042
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 171 9e-041
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 171 9e-041
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 171 9e-041
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 171 9e-041
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 153 4e-035
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 152 6e-035
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 149 4e-034
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 149 4e-034
gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays] 148 1e-033
gi|226532108|ref|NP_001142375.1| hypothetical protein LOC1002745... 148 1e-033
gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT... 145 9e-033
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 144 2e-032
gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare ... 143 3e-032
gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare ... 143 3e-032
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 143 5e-032
gi|226492142|ref|NP_001148607.1| ribonucleoprotein A [Zea mays] 143 5e-032
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 201 bits (511), Expect = 8e-050
Identities = 98/104 (94%), Positives = 100/104 (96%)
Frame = -1
Query: 576 GSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSK 397
GSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIYDRDSGRSK
Sbjct: 186 GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSK 245
Query: 396 GFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFGFVTYNS+QEVQNAI +LNGADLDGRQIRVSEAEARPPRRQF
Sbjct: 246 GFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 197 bits (500), Expect = 2e-048
Identities = 95/104 (91%), Positives = 101/104 (97%)
Frame = -1
Query: 576 GSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSK 397
GSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIYDRDSGRSK
Sbjct: 186 GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 396 GFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 197 bits (500), Expect = 2e-048
Identities = 95/104 (91%), Positives = 101/104 (97%)
Frame = -1
Query: 576 GSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSK 397
GSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIYDRDSGRSK
Sbjct: 186 GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 396 GFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 176 bits (446), Expect = 3e-042
Identities = 86/104 (82%), Positives = 92/104 (88%)
Frame = -1
Query: 576 GSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSK 397
GS S YG G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRSK
Sbjct: 236 GSQRSSYGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 295
Query: 396 GFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 296 GFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 339
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 171 bits (433), Expect = 9e-041
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1
Query: 570 SGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGF 391
S G G G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRSKGF
Sbjct: 233 SSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGF 292
Query: 390 GFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 293 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 334
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 171 bits (433), Expect = 9e-041
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1
Query: 570 SGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGF 391
S G G G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRSKGF
Sbjct: 225 SSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGF 284
Query: 390 GFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 285 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 326
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 171 bits (433), Expect = 9e-041
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1
Query: 570 SGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGF 391
S G G G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRSKGF
Sbjct: 241 SSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGF 300
Query: 390 GFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 301 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 171 bits (433), Expect = 9e-041
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1
Query: 570 SGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGF 391
S G G G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRSKGF
Sbjct: 262 SSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGF 321
Query: 390 GFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
GFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 322 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 363
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 153 bits (384), Expect = 4e-035
Identities = 77/109 (70%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = -1
Query: 591 SSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRD 412
SS E SS G G GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDRD
Sbjct: 172 SSFRENSSFRG-GSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRD 230
Query: 411 SGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
SGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS AEARPPRRQF
Sbjct: 231 SGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 152 bits (383), Expect = 6e-035
Identities = 76/110 (69%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = -1
Query: 594 PSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDR 415
P E SS G G GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDR
Sbjct: 165 PPEKRENSSFRG-GSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223
Query: 414 DSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
DSGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS AEARPPRRQF
Sbjct: 224 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein
precursor [Solanum tuberosum]
Length = 289
Score = 149 bits (376), Expect = 4e-034
Identities = 74/117 (63%), Positives = 86/117 (73%)
Frame = -1
Query: 615 NSTTNPFPSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAE 436
NS P G + S GG GGG S NRVYVGNL+W VD LE+LF EQGKV +
Sbjct: 173 NSGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVD 232
Query: 435 ARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
A+V+YDRDSGRS+GFGFVTY+SA+EV +AI +L+G DL GR IRVS AEARPPRRQF
Sbjct: 233 AKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSPAEARPPRRQF 289
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 149 bits (376), Expect = 4e-034
Identities = 73/113 (64%), Positives = 89/113 (78%), Gaps = 1/113 (0%)
Frame = -1
Query: 606 TNPFPSSTEEGSSGSGYGGGGGGGAG-SGNRVYVGNLSWGVDDMALESLFGEQGKVAEAR 430
+ P P S +GGGGGGG GNR+YVGNLSW VD++ALES F EQGKV +A+
Sbjct: 167 SGPPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAK 226
Query: 429 VIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 271
V+YDR+SGRS+GFGFVTY+SA+EV+NAI +LNGA+LDGR IRVS AEARP R+
Sbjct: 227 VVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVAEARPRRQ 279
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
Length = 268
Score = 148 bits (372), Expect = 1e-033
Identities = 73/110 (66%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Frame = -1
Query: 600 PFPSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 421
P ST G G GGGGGG S N+VYVGNL+WGVD+ LE+LF EQG+V +A+VIY
Sbjct: 159 PRDESTPRAPRGGG-GGGGGGFVDSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIY 217
Query: 420 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 271
DRDSGRS+GFGFVTY SAQEV NAI NL+G DLDGRQIRV+ AE++P R+
Sbjct: 218 DRDSGRSRGFGFVTYGSAQEVNNAISNLDGIDLDGRQIRVTAAESKPRRQ 267
>gi|226532108|ref|NP_001142375.1| hypothetical protein LOC100274547 [Zea mays]
Length = 163
Score = 148 bits (371), Expect = 1e-033
Identities = 71/109 (65%), Positives = 84/109 (77%)
Frame = -1
Query: 600 PFPSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 421
P S G G GGGGG SGN+VYVGNL+WGVD+ LE+LF EQG+V +A+VIY
Sbjct: 53 PRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIY 112
Query: 420 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPR 274
DRDSGRS+GFGFVTY SA+EV NAI NL+G DLDGRQIRV+ AE++P R
Sbjct: 113 DRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDLDGRQIRVTVAESKPRR 161
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120
[Sorghum bicolor]
Length = 262
Score = 145 bits (364), Expect = 9e-033
Identities = 67/92 (72%), Positives = 81/92 (88%)
Frame = -1
Query: 540 GGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGFGFVTYNSAQE 361
G G NRVYVGNLSWGVD+ AL +LF EQG+V EAR++YDR+SGRS+GFGFVTY SA+E
Sbjct: 171 GPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEE 230
Query: 360 VQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 265
V+NAI NL+G+DLDGRQIRV+ AE++PPRRQF
Sbjct: 231 VENAISNLDGSDLDGRQIRVTVAESKPPRRQF 262
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 144 bits (362), Expect = 2e-032
Identities = 78/130 (60%), Positives = 93/130 (71%), Gaps = 3/130 (2%)
Frame = -1
Query: 657 DPPPLPSSLLPSPSNSTT-NPFPSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDD 481
D PL + P P T+ + P E S G G GG S NRVYVGNLSW VDD
Sbjct: 158 DGRPLRVNSGPPPQRETSFSRLPQ--RENSFSRGPGARGGETFDSSNRVYVGNLSWNVDD 215
Query: 480 MALESLFGEQGKVAEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRV 301
ALESLF E+GKV +A+V+YDRDSGRSKGFGFVTY+SA+EV++A+ +LNGA+LDGR IRV
Sbjct: 216 SALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRAIRV 275
Query: 300 SEAEARPPRR 271
S AEA+P RR
Sbjct: 276 SVAEAKPRRR 285
>gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 100
Score = 143 bits (359), Expect = 3e-032
Identities = 67/92 (72%), Positives = 78/92 (84%)
Frame = -1
Query: 555 GGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGFGFVTY 376
GGGGGG S N++YVGNLSWGVD+ LE+LF EQGKV +A+VIYDRDSGRS+GFGFVTY
Sbjct: 3 GGGGGGSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTY 62
Query: 375 NSAQEVQNAIRNLNGADLDGRQIRVSEAEARP 280
SA EV NAI NL+G DLDGRQIRV+ AE++P
Sbjct: 63 GSADEVNNAISNLDGVDLDGRQIRVTVAESKP 94
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 278
Score = 143 bits (359), Expect = 3e-032
Identities = 67/92 (72%), Positives = 78/92 (84%)
Frame = -1
Query: 555 GGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGFGFVTY 376
GGGGGG S N++YVGNLSWGVD+ LE+LF EQGKV +A+VIYDRDSGRS+GFGFVTY
Sbjct: 181 GGGGGGSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTY 240
Query: 375 NSAQEVQNAIRNLNGADLDGRQIRVSEAEARP 280
SA EV NAI NL+G DLDGRQIRV+ AE++P
Sbjct: 241 GSADEVNNAISNLDGVDLDGRQIRVTVAESKP 272
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 143 bits (358), Expect = 5e-032
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Frame = -1
Query: 627 PSPSNSTTNPF--PSSTEEGSSGSGYGGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGE 454
P P+ + F +S G + + G GG S NR+YVGNLSWGVDD+ALE+LF E
Sbjct: 167 PPPARRENSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSE 226
Query: 453 QGKVAEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPR 274
QGKV EARVIYDR++GRS+GFGFVTYNSA+EV AI +L+G DL+GR IRV+ AEARP R
Sbjct: 227 QGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEARPRR 286
Query: 273 R 271
+
Sbjct: 287 Q 287
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 143 bits (358), Expect = 5e-032
Identities = 66/89 (74%), Positives = 80/89 (89%)
Frame = -1
Query: 531 GSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRSKGFGFVTYNSAQEVQN 352
G NRVYVGNLSWGVD+ AL +LF EQG+V EAR+IYDR+SGRS+GFGFVTY SA+EV+N
Sbjct: 176 GDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVEN 235
Query: 351 AIRNLNGADLDGRQIRVSEAEARPPRRQF 265
AI NL+GADLDGRQIRV+ AE++PPR+Q+
Sbjct: 236 AISNLDGADLDGRQIRVTVAESKPPRQQY 264
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,799,217,932
Number of Sequences: 15229318
Number of Extensions: 172799217932
Number of Successful Extensions: 62121603
Number of sequences better than 0.0: 0
|
