BLASTX 7.6.2
Query= UN01360 /QuerySize=718
(717 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransfera... 105 3e-022
sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransfera... 77 8e-014
sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransfera... 75 3e-013
sp|A5D673|RSMA_PELTS Ribosomal RNA small subunit methyltransfera... 75 5e-013
sp|Q6F2B4|RSMA_MESFL Ribosomal RNA small subunit methyltransfera... 72 3e-012
sp|B1WRJ7|RSMA_CYAA5 Ribosomal RNA small subunit methyltransfera... 72 4e-012
sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransfera... 71 7e-012
sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransfera... 68 5e-011
sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransfera... 68 5e-011
sp|Q8YS62|RSMA_ANASP Ribosomal RNA small subunit methyltransfera... 66 2e-010
sp|A6TJK9|RSMA_ALKMQ Ribosomal RNA small subunit methyltransfera... 64 7e-010
sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransfera... 64 7e-010
sp|Q5WSM3|RSMA_LEGPL Ribosomal RNA small subunit methyltransfera... 64 7e-010
sp|Q5ZRF4|RSMA_LEGPH Ribosomal RNA small subunit methyltransfera... 64 9e-010
sp|B3PLS2|RSMA_MYCA5 Ribosomal RNA small subunit methyltransfera... 63 2e-009
sp|Q5X0V1|RSMA_LEGPA Ribosomal RNA small subunit methyltransfera... 62 3e-009
sp|A5IIC0|RSMA_LEGPC Ribosomal RNA small subunit methyltransfera... 62 3e-009
sp|P59157|RSMA_THEEB Ribosomal RNA small subunit methyltransfera... 62 3e-009
sp|Q4A645|RSMA_MYCS5 Ribosomal RNA small subunit methyltransfera... 60 1e-008
sp|Q7V1E1|RSMA_PROMP Ribosomal RNA small subunit methyltransfera... 58 6e-008
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A
OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 105 bits (261), Expect = 3e-022
Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
+++T ++ ++ +FS + +++Q+E A R+ S+Y I +NFYS+P+Y F
Sbjct: 129 HLTTPILAEMVVRRKLFSSLTVMVQEEVARRMT-ALPGQSDYSSFTIFLNFYSKPRYGFT 187
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSS 357
V R F+P PKVD+A+V +LK P PN+ + + FF + +AF +RKMLR SL+ L
Sbjct: 188 VSRNCFYPAPKVDSAIVVLELKEPP--PNIDA-QVFFKITRTAFEQRRKMLRASLKSLFD 244
Query: 356 SPEIEKALGVAGLPVTSRPEELTLGDFVKLHN 261
+I AL + G +RPE L+L DF+KL++
Sbjct: 245 PSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276
>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A
OS=Chlamydophila felis (strain Fe/C-56) GN=rsmA PE=3 SV=1
Length = 284
Score = 77 bits (189), Expect = 8e-014
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Frame = -2
Query: 701 VVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINILVNFYSEPKYNFRVPRE 525
+ KL L + + + + +++QDE A R+ +P EY + I + F+++ +Y F+V
Sbjct: 134 LTKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSG 191
Query: 524 NFFPQPKVDAAVVTFKLKHPRDYP-NVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPE 348
FFP+P+V +AVV +K +P S K FFSL +AF +RK+L +L++L
Sbjct: 192 CFFPKPQVSSAVVHMTVKD--TFPLEESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDL 249
Query: 347 IEKALGVAGLPVTSRPEELTLGDFVKLHNVI 255
+ AL +RPE L+L +++KL ++
Sbjct: 250 VFSALNQLNFSEKTRPETLSLDEYLKLFQLL 280
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A
OS=Chlamydophila caviae GN=rsmA PE=3 SV=1
Length = 278
Score = 75 bits (184), Expect = 3e-013
Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Frame = -2
Query: 701 VVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINILVNFYSEPKYNFRVPRE 525
+ KL L + + + V +++QDE A R+ +P EY + I + F+++ +Y F+V
Sbjct: 128 LTKLFLEVPNQWKTVTVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSPG 185
Query: 524 NFFPQPKVDAAVVTFKLKHPRDYP-NVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPE 348
FFP+P+V +AVV +K +P S + FFSL +AF +RK+L +L+ L
Sbjct: 186 CFFPKPQVSSAVVHMTVK--ETFPLETSLHQKFFSLTRAAFGQRRKLLANALKDLYPKEL 243
Query: 347 IEKALGVAGLPVTSRPEELTLGDFVKLHNVI 255
+ AL +RPE L+L ++++L +++
Sbjct: 244 VFSALNQLNFSEKTRPETLSLNEYLQLFHLL 274
>sp|A5D673|RSMA_PELTS Ribosomal RNA small subunit methyltransferase A
OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=rsmA PE=3 SV=1
Length = 295
Score = 75 bits (182), Expect = 5e-013
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Frame = -2
Query: 668 FSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPKVDAAV 489
F+ +V+++Q E A RL + T++Y +++ V +++EPK FRVPR F+P P VD+AV
Sbjct: 151 FALMVVMVQLEVAFRLT-ASPGTADYGALSVAVQYFTEPKVLFRVPRTVFYPPPGVDSAV 209
Query: 488 VTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGV---AGL 318
V L+ P V + FF +V +AF +RK L SL P E L V AG+
Sbjct: 210 VRLALR-PAPAVTVRNEDVFFQVVRAAFGFRRKTLLNSLAASGLGPGREAWLEVLKRAGI 268
Query: 317 PVTSRPEELTLGDFVKL 267
R E L+L +F +
Sbjct: 269 DPQRRGETLSLSEFASI 285
>sp|Q6F2B4|RSMA_MESFL Ribosomal RNA small subunit methyltransferase A
OS=Mesoplasma florum GN=rsmA PE=3 SV=1
Length = 267
Score = 72 bits (175), Expect = 3e-012
Identities = 40/154 (25%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Frame = -2
Query: 713 ISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRV 534
I+++++ L + D + V ++Q E A+R+ + Y +++ FY++ KY F V
Sbjct: 115 ITSEILFRTLNVSDKLTKAVFMMQKEVAIRVCS-YKGENNYNNLSVACEFYADKKYEFTV 173
Query: 533 PRENFFPQPKVDAAVV--TFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLS 360
P+ F+P PKVD+A++ TF K+ + F + + FN +RK + +L +++
Sbjct: 174 PKHMFYPVPKVDSAIISLTFNNKYTE---QIKDKDKFLTFLRKIFNNRRKTILNNLSNVT 230
Query: 359 S-SPEIEKALGVAGLPVTSRPEELTLGDFVKLHN 261
+ + + L + + RPE + L DF++++N
Sbjct: 231 NDKTKANEILDNLNIDKSLRPEVVGLEDFIRIYN 264
>sp|B1WRJ7|RSMA_CYAA5 Ribosomal RNA small subunit methyltransferase A
OS=Cyanothece sp. (strain ATCC 51142) GN=rsmA PE=3 SV=1
Length = 270
Score = 72 bits (174), Expect = 4e-012
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Frame = -2
Query: 683 PMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPK 504
P + +VLL+Q E A R++ + Y ++I + + ++ Y VP+++F+P PK
Sbjct: 129 PKQPSYDLIVLLIQKEVAQRIIAYP-GSKNYGALSIKMQYLADCNYICDVPKKSFYPPPK 187
Query: 503 VDAAVVTFKLKHPRDYPNVSSTKSFF-SLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGV 327
VD+AV+TF+ PR N ++ + +L+N F+ +RKMLR +LQ L + + L
Sbjct: 188 VDSAVITFR---PRSLLNSATNPKYLETLINLGFSSRRKMLRNNLQSLIDRDLLTEFLTE 244
Query: 326 AGLPVTSRPEELTLGDFVKLHN 261
L R E L L ++ L N
Sbjct: 245 IDLNEQVRAENLDLNQWIALSN 266
>sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransferase A
OS=Chlamydophila abortus GN=rsmA PE=3 SV=1
Length = 278
Score = 71 bits (172), Expect = 7e-012
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = -2
Query: 695 KLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINILVNFYSEPKYNFRVPRENF 519
KL L + + V +++QDE A R+ +P EY + I + F+ + Y F+V F
Sbjct: 130 KLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVSPGCF 187
Query: 518 FPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEK 339
P+P+V +AVV +K TK FFSL +AF +RK+L +L+ L + +
Sbjct: 188 LPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVFE 246
Query: 338 ALGVAGLPVTSRPEELTLGDFVKL 267
AL +RPE L+L D++KL
Sbjct: 247 ALSQLHFSDKTRPETLSLDDYLKL 270
>sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransferase A
OS=Synechococcus elongatus (strain PCC 7942) GN=rsmA PE=3 SV=1
Length = 279
Score = 68 bits (165), Expect = 5e-011
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Frame = -2
Query: 683 PMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQP 507
P F +VLL+Q E A RL P R Y +++ V + + + VP ++F P P
Sbjct: 128 PRRPAFERLVLLVQQEVADRLCATPGQRA--YGALSVRVQYLASCERVCAVPPKSFSPPP 185
Query: 506 KVDAAVVTFKLKHPRDYPNVSSTKS-FFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALG 330
KV + V+ K PR +P V + L+N F+ KRKMLR +L+ L SS +IE A
Sbjct: 186 KVQSTVICLK---PRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAAFA 242
Query: 329 VAGLPVTSRPEELTLGDFVKLHNVIG 252
+ +R E L++ ++ L +G
Sbjct: 243 AHQIAPEARAETLSIDQWIGLCTDLG 268
>sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransferase A
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=rsmA PE=3 SV=1
Length = 279
Score = 68 bits (165), Expect = 5e-011
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Frame = -2
Query: 683 PMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQP 507
P F +VLL+Q E A RL P R Y +++ V + + + VP ++F P P
Sbjct: 128 PRRPAFERLVLLVQQEVADRLCATPGQRA--YGALSVRVQYLASCERVCAVPPKSFSPPP 185
Query: 506 KVDAAVVTFKLKHPRDYPNVSSTKS-FFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALG 330
KV + V+ K PR +P V + L+N F+ KRKMLR +L+ L SS +IE A
Sbjct: 186 KVQSTVICLK---PRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAAFA 242
Query: 329 VAGLPVTSRPEELTLGDFVKLHNVIG 252
+ +R E L++ ++ L +G
Sbjct: 243 AHQIAPEARAETLSIDQWIGLCTDLG 268
>sp|Q8YS62|RSMA_ANASP Ribosomal RNA small subunit methyltransferase A
OS=Anabaena sp. (strain PCC 7120) GN=rsmA PE=3 SV=1
Length = 271
Score = 66 bits (160), Expect = 2e-010
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Frame = -2
Query: 668 FSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPKVDAAV 489
F +VLL+Q E A RL + + + +++ V + ++ ++ VP F P PKVD+AV
Sbjct: 134 FDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVPASAFHPPPKVDSAV 192
Query: 488 VTFKLKHPRDYP-NVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGVAGLPV 312
V + PR V+ K +LV F KRKMLR +LQ + + + L +
Sbjct: 193 VRLR---PRQIEIPVNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINP 249
Query: 311 TSRPEELTLGDFVKLHNVIGRE 246
+R E+++ +VKL N++G E
Sbjct: 250 QARAEDISTQQWVKLANLLGVE 271
>sp|A6TJK9|RSMA_ALKMQ Ribosomal RNA small subunit methyltransferase A
OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmA PE=3 SV=1
Length = 287
Score = 64 bits (155), Expect = 7e-010
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Frame = -2
Query: 713 ISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRV 534
++T +V L +V+++Q E A+R+ + T +Y ++I V +Y P+ +V
Sbjct: 130 VTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM-QAGPGTKDYGALSIAVQYYCNPEILLKV 188
Query: 533 PRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQH--LS 360
P F PQPKV++ V+ ++ +P V F+LV AF +RK L +L L
Sbjct: 189 PPSVFIPQPKVESIVIKLQV-YPEPKVKVERDDLMFALVKDAFGKRRKTLLNALSSGLLQ 247
Query: 359 SSPEI-EKALGVAGLPVTSRPEELTLGDFVKL 267
S EI ++L A + R E LT+ ++ L
Sbjct: 248 LSKEIVRESLEAANIDENRRGETLTIEEYATL 279
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A
OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 64 bits (155), Expect = 7e-010
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Frame = -2
Query: 713 ISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRV 534
++T ++ L + +++Q E A R+ + T +Y ++I V +YS PK +V
Sbjct: 130 VTTPIIMKFLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKV 188
Query: 533 PRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKS--FFSLVNSAFNGKRKMLRKSLQHLS 360
P F PQPKV++ V+ + D P VS + FFSLV AF +RK L +L
Sbjct: 189 PPSVFIPQPKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALSTGD 245
Query: 359 SSPE---IEKALGVAGLPVTSRPEELTLGDFVKLHNVIGRE 246
E + + L + + R E LT+ ++ L N + ++
Sbjct: 246 LKLEKSLLREVLAASNIDENRRGETLTIEEYGVLANNLAKK 286
>sp|Q5WSM3|RSMA_LEGPL Ribosomal RNA small subunit methyltransferase A
OS=Legionella pneumophila (strain Lens) GN=rsmA PE=3 SV=1
Length = 256
Score = 64 bits (155), Expect = 7e-010
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
NIST ++ LL + +LQ E R + A T Y +++++ ++ E +Y F
Sbjct: 107 NISTPLLIYLLKFITCIDDMHFMLQKEVVER-IAAAHGTKAYGRLSVMLQYHCEVEYLFD 165
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSS 357
VP E F P+PKVD+A+V + +V +T+ ++V AF +RK L +L+ + S
Sbjct: 166 VPPEAFEPRPKVDSAIVRLTPHRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIIS 224
Query: 356 SPEIEKALGVAGLPVTSRPEELTLGDFVKL 267
++ LG+ G RPE++++ ++V+L
Sbjct: 225 LSQLND-LGIDG---GKRPEQISVAEYVQL 250
>sp|Q5ZRF4|RSMA_LEGPH Ribosomal RNA small subunit methyltransferase A
OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=rsmA PE=3 SV=1
Length = 256
Score = 64 bits (154), Expect = 9e-010
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
NIST ++ LL + +LQ E R + A T Y +++++ ++ E +Y F
Sbjct: 107 NISTPLLIYLLKFITCIDDMHFMLQKEVVER-IAAAHGTKAYGRLSVMLQYHCEVEYLFD 165
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSS 357
VP E F P+PKVD+A+V + +V +T+ ++V AF +RK L +L+ + S
Sbjct: 166 VPPEAFEPRPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIIS 224
Query: 356 SPEIEKALGVAGLPVTSRPEELTLGDFVKL 267
++ LG+ G RPE++++ ++V+L
Sbjct: 225 LSQLND-LGIDG---GKRPEQISVAEYVQL 250
>sp|B3PLS2|RSMA_MYCA5 Ribosomal RNA small subunit methyltransferase A
OS=Mycoplasma arthritidis (strain 158L3-1) GN=rsmA PE=3 SV=1
Length = 258
Score = 63 bits (151), Expect = 2e-009
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
NI+++++ L+ I L++QDE A RLV +T EY + + VNF K +F
Sbjct: 104 NITSEILFKLIENHSILKKATLMVQDEVANRLVAMP-KTKEYSKLTVSVNFVGNVKKHFV 162
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSL 372
V NF P PKVD+A++T Y + K + + F KRKML +L
Sbjct: 163 VKASNFNPAPKVDSAIITIDFYKSLPY----NLKKVLAFIKQIFAFKRKMLINNL 213
>sp|Q5X0V1|RSMA_LEGPA Ribosomal RNA small subunit methyltransferase A
OS=Legionella pneumophila (strain Paris) GN=rsmA PE=3 SV=1
Length = 256
Score = 62 bits (150), Expect = 3e-009
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
NIST ++ LL + +LQ E R + T Y +++++ ++ E +Y F
Sbjct: 107 NISTPLLIYLLKFITCIDDMHFMLQKEVVER-IAATHGTKAYGRLSVMLQYHCEVEYLFD 165
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSS 357
VP E F P+PKVD+A+V + +V +T+ ++V AF +RK L +L+ + S
Sbjct: 166 VPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIIS 224
Query: 356 SPEIEKALGVAGLPVTSRPEELTLGDFVKL 267
++ LG+ G RPE++++ ++V+L
Sbjct: 225 LSQLND-LGIDG---GKRPEQISVAEYVQL 250
>sp|A5IIC0|RSMA_LEGPC Ribosomal RNA small subunit methyltransferase A
OS=Legionella pneumophila (strain Corby) GN=rsmA PE=3 SV=1
Length = 256
Score = 62 bits (150), Expect = 3e-009
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Frame = -2
Query: 716 NISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFR 537
NIST ++ LL + +LQ E R + T Y +++++ ++ E +Y F
Sbjct: 107 NISTPLLIYLLKFITCIDDMHFMLQKEVVER-IAATHGTKAYGRLSVMLQYHCEVEYLFD 165
Query: 536 VPRENFFPQPKVDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSS 357
VP E F P+PKVD+A+V + +V +T+ ++V AF +RK L +L+ + S
Sbjct: 166 VPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIIS 224
Query: 356 SPEIEKALGVAGLPVTSRPEELTLGDFVKL 267
++ LG+ G RPE++++ ++V+L
Sbjct: 225 LSQLND-LGIDG---GKRPEQISVAEYVQL 250
>sp|P59157|RSMA_THEEB Ribosomal RNA small subunit methyltransferase A
OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA PE=3 SV=1
Length = 265
Score = 62 bits (150), Expect = 3e-009
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Frame = -2
Query: 683 PMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPK 504
P F ++LL+Q E RL+ + + Y +++ V F + + VP F P PK
Sbjct: 120 PRRPAFERLILLVQKEIGDRLM-ASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPPK 178
Query: 503 VDAAVVTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGVA 324
VD+ VV L+ R P V S + +L+ F +RKML +L+ L ++ +AL
Sbjct: 179 VDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQVRQALLQL 236
Query: 323 GLPVTSRPEELTLGDFVKLHNVI 255
G SR E L+L D++ L V+
Sbjct: 237 GRDANSRAEALSLEDWLALSEVL 259
>sp|Q4A645|RSMA_MYCS5 Ribosomal RNA small subunit methyltransferase A
OS=Mycoplasma synoviae (strain 53) GN=rsmA PE=3 SV=1
Length = 259
Score = 60 bits (144), Expect = 1e-008
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Frame = -2
Query: 668 FSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPKVDAAV 489
F +VL++Q E A R+V + Y ++I + ++ K F V + +F P PKVD+AV
Sbjct: 125 FKGIVLMVQKEVAQRIVAQK-NSKNYSKLSISSQYLADVKIEFIVNKNSFIPAPKVDSAV 183
Query: 488 VTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGVAGLPVT 309
++ K K D N+ FF + F +RK L +L +S +++ A L
Sbjct: 184 ISLKFKDNIDKENLEKMLKFFLV---CFANRRKKLTFTLNRNFNSTKVKLAYEKLNLSDN 240
Query: 308 SRPEELTLGDFVKL 267
+R +EL + V L
Sbjct: 241 ARIQELDVSQIVLL 254
>sp|Q7V1E1|RSMA_PROMP Ribosomal RNA small subunit methyltransferase A
OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=rsmA PE=3 SV=1
Length = 277
Score = 58 bits (138), Expect = 6e-008
Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = -2
Query: 668 FSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPKYNFRVPRENFFPQPKVDAAV 489
++ ++ L+Q + R++ T+ +++ + S + VP +F P PKV + +
Sbjct: 133 YNKIIFLMQKDVVDRILAKDGNTNA-GAMSVRMQLISNIRRICDVPPSSFDPPPKVFSTL 191
Query: 488 VTFKLKHPRDYPNVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEKALGVAGLPVT 309
V F+ P ++ K L+ +FN +RKM+R +L + S+ EIEK + +
Sbjct: 192 VVFEPLRPEMRLDIKLEKYLDKLLRISFNSRRKMIRNTLNSILSAEEIEKLSESSQICFN 251
Query: 308 SRPEELTLGDFVKL 267
SRP+++++ ++KL
Sbjct: 252 SRPQDISINKWIKL 265
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,106,165,710
Number of Sequences: 518415
Number of Extensions: 6106165710
Number of Successful Extensions: 55409465
Number of sequences better than 0.0: 0
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