BLASTX 7.6.2
Query= UN02270 /QuerySize=1238
(1237 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 379 2e-105
TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (... 166 3e-041
TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (... 148 9e-036
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 127 1e-029
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 118 8e-027
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 116 4e-026
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 113 3e-025
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 113 3e-025
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 78 1e-014
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 70 2e-012
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 62 5e-010
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 62 9e-010
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 60 3e-009
TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 60 3e-009
TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-bin... 59 6e-009
TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-bin... 57 2e-008
TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding ... 55 8e-008
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 379 bits (973), Expect = 2e-105
Identities = 219/321 (68%), Positives = 250/321 (77%), Gaps = 22/321 (6%)
Frame = +1
Query: 70 MAVLEAALSILSLSFSSSSSSSSSSSSSSKPHLFSRQTKPISLSIRTPTNLSPVSPL-SI 246
MAVLEA+LSI SFSSSSSSS S + S K +LS+R P+NLSPV L S
Sbjct: 1 MAVLEASLSI--FSFSSSSSSSKPYLFSKR----SSSLKLTALSLRIPSNLSPVFSLRSG 54
Query: 247 PLRARRIVSVFSSVAEEETSL-----TDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISN 411
+RR+VSV SVAE+ETS +EKTEE TQ +NLKRKLFVFNLPWSMSVNDIS
Sbjct: 55 SDNSRRLVSVLCSVAEKETSADEETSQEEKTEE-TQNSNLKRKLFVFNLPWSMSVNDISE 113
Query: 412 LFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKF 591
LFGQCGTV +VEII+QKDGKNRGFAFVTM+SGEEAQ+A++KFD+FQVSGRII V+FAR+F
Sbjct: 114 LFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRF 173
Query: 592 KKP-PKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPGG 768
KKP PK + +PG+TRHKLYVSNLAWKARSTHLRE FTAADFN VSARVVFADP G
Sbjct: 174 KKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEG 233
Query: 769 RASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFSLRSAGESEDSNTIEDNNTSEEE 948
R+SGYGFVSF TREEAE+AI+KL+GKE+MGRPI LKFSLRSA ESED +++E NN SE+
Sbjct: 234 RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED- 292
Query: 949 PEEASDTTE---ASEEKPVE* 1002
DT E SEE VE*
Sbjct: 293 ----GDTVEDKNTSEENIVE* 309
>TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797315 REVERSE
Length = 305
Score = 166 bits (420), Expect = 3e-041
Identities = 98/271 (36%), Positives = 154/271 (56%), Gaps = 10/271 (3%)
Frame = +1
Query: 193 SLSIRTPT----NLSPVSPLSIPLRARRIVSVFSSVAEE---ETSLTDEKTEETTQTTNL 351
SLS+ TP+ + P SIP ++R + S FS+ +E E+S + E +
Sbjct: 33 SLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEIS 92
Query: 352 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVE 531
K +L N+PW+ + DI +LF + G+V+ +E+ K +NRG F+ M+S EEA +A++
Sbjct: 93 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 152
Query: 532 KFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFF 711
+S + GR ++V++A+ KK K P T SP T L+V+NLA++AR+ HL+EFF
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKK--KTYAPRETPSPVPT-FNLFVANLAFEARAKHLKEFF 209
Query: 712 TAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFSLRS 891
A N+VS V+F + R+SGYGFVSF T+++AE A+ + GK+ +GRPI L S +
Sbjct: 210 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 269
Query: 892 AGESEDSNTIEDNNTSEEEPEEASDTTEASE 984
+EEEP ++ T+ E
Sbjct: 270 VKLQAKEGLQPPEEEAEEEPSQSETMTQEHE 300
>TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797193 REVERSE
Length = 245
Score = 148 bits (372), Expect = 9e-036
Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 3/211 (1%)
Frame = +1
Query: 352 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVE 531
K +L N+PW+ + DI +LF + G+V+ +E+ K +NRG F+ M+S EEA +A++
Sbjct: 33 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92
Query: 532 KFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFF 711
+S + GR ++V++A+ KK K P T SP T L+V+NLA++AR+ HL+EFF
Sbjct: 93 SLESCEYEGRRLKVDYAKTKKK--KTYAPRETPSPVPT-FNLFVANLAFEARAKHLKEFF 149
Query: 712 TAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFSLRS 891
A N+VS V+F + R+SGYGFVSF T+++AE A+ + GK+ +GRPI L S +
Sbjct: 150 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 209
Query: 892 AGESEDSNTIEDNNTSEEEPEEASDTTEASE 984
+EEEP ++ T+ E
Sbjct: 210 VKLQAKEGLQPPEEEAEEEPSQSETMTQEHE 240
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 127 bits (319), Expect = 1e-029
Identities = 76/232 (32%), Positives = 131/232 (56%), Gaps = 14/232 (6%)
Frame = +1
Query: 292 EEETSLTDEKTEE---TTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK 462
EEE +E+ EE TTQ + + +L+V NLP++++ +++S +FG+ GTV+ V+I+ K
Sbjct: 92 EEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDK 151
Query: 463 -DGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSA----T 627
++RGF FVTM S EEA+ A++ F+S Q+ GR ++VNF + + +
Sbjct: 152 VTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNN 211
Query: 628 SSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFLTR 807
S ++ HK+Y NL W S L++ F ++ A+V++ GR+ G+GF+SF +
Sbjct: 212 RSYVDSPHKVYAGNLGWNLTSQGLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESA 270
Query: 808 EEAEDAISKLDGKELMGRPINLKFSLRSAGESEDSNTIEDNNTSEEEPEEAS 963
E + A++ ++G E+ GR + L + + T+ + E E EEAS
Sbjct: 271 ENVQSALATMNGVEVEGRALRLNLA-----SEREKPTVSPPSVEEGETEEAS 317
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 118 bits (295), Expect = 8e-027
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Frame = +1
Query: 217 NLSPVSPLSIPLRA----RRIVSVFSSVAEEETSLTDEKTEETTQTTNLKRKLFVFNLPW 384
N S PL I R+ R++S +V EE D + + KL+ NLP+
Sbjct: 35 NFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPY 94
Query: 385 SMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGR 561
++ ++ + VE++ +D G++RGFAFVTMS+ E+ ++ D + GR
Sbjct: 95 NVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGR 154
Query: 562 IIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSA 741
++VNFA K K +PL P ET HKL+V NL+W S L F ++V A
Sbjct: 155 ALKVNFADKPKPNKEPLYP-------ETEHKLFVGNLSWTVTSESLAGAFRECG-DVVGA 206
Query: 742 RVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINL 873
RVVF GR+ GYGFV + ++ E E A+ LDG EL GR I +
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
Score = 69 bits (166), Expect = 7e-012
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +1
Query: 580 ARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD 759
A K KP P P ET HKL+V NL+W S L F ++V ARVVF
Sbjct: 155 ALKVNFADKPKPNKEPLYP-ETEHKLFVGNLSWTVTSESLAGAFRECG-DVVGARVVFDG 212
Query: 760 PGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFS 882
GR+ GYGFV + ++ E E A+ LDG EL GR I + +
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 67 bits (162), Expect = 2e-011
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 352 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAV 528
+ KLFV NL W+++ ++ F +CG V+ ++ D G++RG+ FV SS E ++A+
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 529 EKFDSFQVSGRIIRVNFAR 585
E D F++ GR IRVN A+
Sbjct: 236 ESLDGFELEGRAIRVNLAQ 254
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 116 bits (289), Expect = 4e-026
Identities = 91/277 (32%), Positives = 136/277 (49%), Gaps = 36/277 (12%)
Frame = +1
Query: 103 SLSFSSSSSSSSSSSSSSKPHLFSRQTKPISLSIRTPTNLSPVSPLSIPLRARRIVSVFS 282
SL F S +S S S S F + +S SI N SP S R R V++ S
Sbjct: 17 SLPFGVSRPASVSLLSPSLS--FKLNSDSVSFSIAAKWN-SPAS------RFARNVAITS 67
Query: 283 SVAEEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK 462
EE D + Q+ + KLFV NLP+++ ++ LF G V VE+I K
Sbjct: 68 EFEVEEDGFADVAPPK-EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDK 126
Query: 463 -DGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPL--------P 615
G++RGF FVTMSS E ++A ++F+ +++ GR +RVN PP P P
Sbjct: 127 ITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG-----PPPPKREDGFSRGP 181
Query: 616 PSATSSPGE-----------TRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADP 762
S+ S G + +++YV NL+W L F+ +V ARV++
Sbjct: 182 RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRD 240
Query: 763 GGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINL 873
GR+ G+GFV++ + +E ++AI LDG +L GR I +
Sbjct: 241 SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 113 bits (282), Expect = 3e-025
Identities = 70/173 (40%), Positives = 96/173 (55%), Gaps = 7/173 (4%)
Frame = +1
Query: 358 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEK 534
KLFV NLP+ + ++ LF Q GTV E+I +D ++RGF FVTMS+ EEA+ AVEK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 535 FDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFT 714
F+SF+V+GR + VN + P+ P + ++YV NL W S L F+
Sbjct: 174 FNSFEVNGRRLTVN-----RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228
Query: 715 AADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINL 873
+V ARVV GR+ G+GFV E AI+ LDG+ L GR I +
Sbjct: 229 EHG-KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 113 bits (281), Expect = 3e-025
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 7/173 (4%)
Frame = +1
Query: 358 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEK 534
KLFV NL + ++ ++ LF Q GTV E+I ++ ++RGF FVTMSS +EA++AVEK
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 535 FDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFT 714
F+ + ++GR++ VN K P+ P E ++YV NL W + L + F+
Sbjct: 211 FNRYDLNGRLLTVN-----KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265
Query: 715 AADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINL 873
+V ARVV+ GR+ G+GFV+ +E +AIS LDG+ L GR I +
Sbjct: 266 EHG-KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 78 bits (190), Expect = 1e-014
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 7/196 (3%)
Frame = +1
Query: 316 EKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVT 495
E+ + T ++V NLP + +++ FG+ G + S +++ + G +R F FV
Sbjct: 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 496 MSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LY 660
E A SAVEK + + ++ V A+K + + L K LY
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 661 VSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLD 840
+ NL L+E F +++ V++ V +P G + G+GFV++ EEA A+S+++
Sbjct: 336 LKNLDDSVDDEKLKEMF--SEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 841 GKELMGRPINLKFSLR 888
GK + +P+ + + R
Sbjct: 394 GKMIGRKPLYIALAQR 409
Score = 63 bits (152), Expect = 3e-010
Identities = 47/192 (24%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Frame = +1
Query: 343 TNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQS 522
T+ L+ +L ++ + +LF V+SV + + ++ ++ G+A++ S+ +A
Sbjct: 45 THPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 523 AVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLR 702
A+E + + R IR+ + + P + S G +++ NL + L
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNRD-------PSTRLSGKG----NIFIKNLDASIDNKALF 153
Query: 703 EFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFS 882
E F++ F + + V D GR+ GYGFV F E A+ AI KL+G + + + +
Sbjct: 154 ETFSS--FGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 883 LRSAGESEDSNT 918
+R + D NT
Sbjct: 212 IRRQERARDENT 223
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 70 bits (170), Expect = 2e-012
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Frame = +1
Query: 361 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 540
++V NLP ++ +++ FG+ G + S ++K + G +R F FV S E A AVEK +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 541 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 705
+ ++ V A+K + L K LY+ NL L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 706 FFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKFSL 885
F +++ V++ V + G + G+GFV++ EEA A+ +++GK + +P+ + +
Sbjct: 347 MF--SEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Query: 886 R 888
R
Sbjct: 405 R 405
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 62 bits (150), Expect = 5e-010
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Frame = +1
Query: 358 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK-DGKNRGFAFVTMSSGEEAQSAVEK 534
KLFV NL +++ ++ LF G V VE+I K G++RGF FVTMS+ E ++A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 535 FDSFQVSGRIIRVNFARKFKKPPKP 609
F+ ++ GR +RVN PP P
Sbjct: 160 FNGYEFEGRPLRVNAG-----PPPP 179
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 62 bits (148), Expect = 9e-010
Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 17/279 (6%)
Frame = +1
Query: 109 SFSSSSSSSSSSSSSSKP-----HLFSRQTKPISLSIRTPTNLSPVSPLSIPLRARRIVS 273
S SS S S KP + S+ +K S S + + ++ S
Sbjct: 297 SSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDS 356
Query: 274 VFSSVAEEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEII 453
V E+ S + T QT + LF NL + ++ +DI N F + G V+ V +
Sbjct: 357 DVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS 416
Query: 454 KQKDGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSS 633
DG +G+ + +S EEAQ A+E + + GR +R++ A + P P
Sbjct: 417 SFDDGSFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLANERGTPRNSNP--GRKG 473
Query: 634 PGETRHKLYV----SNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFL 801
G +YV S+L LR F+ + V G + G+ ++
Sbjct: 474 EGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCG-EVTRVHVPTDRETGASRGFAYIDLT 532
Query: 802 TREEAEDAISKLDGKELMGRPINLKFSL-RSAGESEDSN 915
+ D +L G E+ G I+++ S R + E SN
Sbjct: 533 S---GFDEALQLSGSEIGGGNIHVEESRPRDSDEGRSSN 568
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 60 bits (143), Expect = 3e-009
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +1
Query: 625 TSSPGETRH---KLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD-PGGRASGYGFV 792
TS G R+ KL+V L+W + L++ FT+ F V+ V AD GR+ G+GFV
Sbjct: 24 TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTS--FGEVTEATVIADRETGRSRGFGFV 81
Query: 793 SFLTREEAEDAISKLDGKELMGRPINLKFSLRSAGESEDS 912
SF + A +AI ++DGKEL GR I + + + S
Sbjct: 82 SFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 60 bits (143), Expect = 3e-009
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +1
Query: 625 TSSPGETRH---KLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD-PGGRASGYGFV 792
TS G R+ KL+V L+W + L++ FT+ F V+ V AD GR+ G+GFV
Sbjct: 24 TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTS--FGEVTEATVIADRETGRSRGFGFV 81
Query: 793 SFLTREEAEDAISKLDGKELMGRPINLKFSLRSAGESEDS 912
SF + A +AI ++DGKEL GR I + + + S
Sbjct: 82 SFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 427
Score = 59 bits (141), Expect = 6e-009
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Frame = +1
Query: 526 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGET--RHKLYVSNLAWKARSTHL 699
V FD S I+ +N F +P K AT +T ++V +L+ + L
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 700 REFFTAADFNLVS-ARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLK 876
+ F+A FN S ARV++ GR+ G+GFVSF +++A+ AI++++GK + R I
Sbjct: 165 FDSFSA--FNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 222
Query: 877 FSLRSAGESEDSNTIEDNNTSEEEPEEASDTTEASEEKPVE 999
++ + A ED ++ + + E + D E S E E
Sbjct: 223 WATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 263
>TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 431
Score = 57 bits (137), Expect = 2e-008
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Frame = +1
Query: 526 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGET--RHKLYVSNLAWKARSTHL 699
V FD S I+ +N F +P K AT +T ++V +L+ + L
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 700 REFFTAADFNLVS-----ARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRP 864
+ F+A FN S ARV++ GR+ G+GFVSF +++A+ AI++++GK + R
Sbjct: 165 FDSFSA--FNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQ 222
Query: 865 INLKFSLRSAGESEDSNTIEDNNTSEEEPEEASDTTEASEEKPVE 999
I ++ + A ED ++ + + E + D E S E E
Sbjct: 223 IRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 267
>TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding protein,
putative | chr3:4673027-4675950 FORWARD
Length = 428
Score = 55 bits (131), Expect = 8e-008
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Frame = +1
Query: 526 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGET--RHKLYVSNLAWKARSTHL 699
V FD + I+ +N F +P K AT +T ++V +L+ + L
Sbjct: 101 VHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATL 160
Query: 700 REFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPINLKF 879
+ F+ + ARV++ GR+ G+GFVSF +++A+ AI++++GK L R I +
Sbjct: 161 YQSFSVFS-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNW 219
Query: 880 SLRSAGESEDSNTIEDNNTSEEEPEEASDTTEASEEKPVE 999
+ + A +D + + + E + D E E+ E
Sbjct: 220 ATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPE 259
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,890,859,826
Number of Sequences: 33410
Number of Extensions: 1890859826
Number of Successful Extensions: 69327208
Number of sequences better than 0.0: 0
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