BLASTX 7.6.2
Query= UN02280 /QuerySize=1186
(1185 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT... 436 6e-120
gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Ar... 434 2e-119
gi|224141741|ref|XP_002324223.1| predicted protein [Populus tric... 369 6e-100
gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein... 362 6e-098
gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vini... 362 8e-098
gi|224089018|ref|XP_002308603.1| predicted protein [Populus tric... 362 1e-097
gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP... 345 1e-092
gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, ke... 332 1e-088
gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza... 299 1e-078
gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japo... 297 3e-078
gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryz... 297 3e-078
gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT... 295 1e-077
gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 ... 291 2e-076
gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Z... 290 4e-076
gi|226504202|ref|NP_001146469.1| hypothetical protein LOC1002800... 285 2e-074
gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrel... 246 8e-063
gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryz... 172 1e-040
gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis ... 145 2e-032
gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-... 142 2e-031
gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Ho... 141 3e-031
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002
[Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 436 bits (1119), Expect = 6e-120
Identities = 216/235 (91%), Positives = 223/235 (94%), Gaps = 5/235 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
MEIDREDGR PNQLRPLACSRNILHRPHGSASWSQGDTKVL VYGPK T+KNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
CFEVIWKPK+GQIGK EKEYEMI+K+TIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI
Sbjct: 61 CFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDAGIPMKHLAVAICCCLAD+GY+VLDPNKLEEKKMTAFAYLVFPNTTLSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLADNGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQTQ 762
E EGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ+Q
Sbjct: 181 EGSSVAEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQSQ 235
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis
thaliana]
Length = 239
Score = 434 bits (1114), Expect = 2e-119
Identities = 215/234 (91%), Positives = 222/234 (94%), Gaps = 5/234 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
MEIDREDGR PNQLRPLACSRNILHRPHGSASWSQGDTKVL VYGPK T+KNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
CFEVIWKPKSGQIGK EKEYEMILK+TIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI
Sbjct: 61 CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDAGIPMKHLAVAICCCLA++GY+VLDPNKLEEKKMTAFAYLVFPNTTLSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQT 759
E EGEPVEHGIITS+THGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ+
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQS 234
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 369 bits (946), Expect = 6e-100
Identities = 176/232 (75%), Positives = 204/232 (87%), Gaps = 5/232 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
ME DR+DGR P+QLRPL+C+RN+LHR HGSASWSQGDTKVL VYGPK T+KNENPEKA
Sbjct: 1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
C EVIWKPK+GQIGK EKE+EMILK+T+QSIC+LT+NPNTTTS+I+QVV+DDG+LL CAI
Sbjct: 61 CIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDAGIPMKHLAVAICCCLA+ GYV+LDP KLEE+KM F YLVFPN+ +SVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVSVLP 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 753
E VEGEP+EHGIITSVTHGVMSV++Y C+E GRAA+ LS F R++ Q
Sbjct: 181 EGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAASTKLSDFLRRSLQ 232
>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 245
Score = 362 bits (929), Expect = 6e-098
Identities = 173/233 (74%), Positives = 204/233 (87%), Gaps = 5/233 (2%)
Frame = +1
Query: 70 AMEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEK 246
+MEI R+DGR NQLRPLACSRNIL+R HGSASWSQGDTKVL VYGPK T+KNENPEK
Sbjct: 2 SMEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK 61
Query: 247 ACFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCA 426
AC EV+WKPK+GQIGK EKEYE+ILK+T++SIC+L +NPNTTTS+IIQVV DDG+LLPCA
Sbjct: 62 ACIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCA 121
Query: 427 INAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL 606
INAACAALVDA IP+KHLAVAICCCL +SGYV+LDP K+EE+KM AFAYLVFPN+ +S++
Sbjct: 122 INAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISII 181
Query: 607 PE----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 753
PE +EGE +EHGIITSVTHGVMSVDDY C+E G+AA+ +SAF R++ Q
Sbjct: 182 PEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQ 234
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 362 bits (928), Expect = 8e-098
Identities = 173/232 (74%), Positives = 203/232 (87%), Gaps = 5/232 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
MEI R+DGR NQLRPLACSRNIL+R HGSASWSQGDTKVL VYGPK T+KNENPEKA
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
C EV+WKPK+GQIGK EKEYE+ILK+T++SIC+L +NPNTTTS+IIQVV DDG+LLPCAI
Sbjct: 61 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDA IP+KHLAVAICCCL +SGYV+LDP K+EE+KM AFAYLVFPN+ +S++P
Sbjct: 121 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 753
E +EGE +EHGIITSVTHGVMSVDDY C+E G+AA+ +SAF R++ Q
Sbjct: 181 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQ 232
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 362 bits (927), Expect = 1e-097
Identities = 177/232 (76%), Positives = 199/232 (85%), Gaps = 5/232 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKV-LVVYGPKPVTRKNENPEKA 249
MEIDR+DGR P+QLRPL+CS N+LHR HGSASWSQGDTKV VYGPK T+KNENPEKA
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
C EVIWKPK+GQIGK E+EYEMILK+T+QSIC+LT+NPNTTTS+I+Q V+DDG+LL CAI
Sbjct: 61 CVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDA IPMKHLAVAICCCLAD GYV+LDP KLEE+KM FAYLVFPN+ LSVL
Sbjct: 121 NAACAALVDARIPMKHLAVAICCCLADVGYVILDPTKLEEQKMKGFAYLVFPNSVLSVLL 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 753
E VEGE EHGIITSVTHGVM V++Y CVE GRAA+A LS F RK+ Q
Sbjct: 181 EGSSLVEGESTEHGIITSVTHGVMPVEEYLKCVERGRAASAKLSDFLRKSLQ 232
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative
[Ricinus communis]
Length = 211
Score = 345 bits (883), Expect = 1e-092
Identities = 166/206 (80%), Positives = 186/206 (90%), Gaps = 5/206 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
M+IDR+DGR PNQLRPLACSRN+L+R HGSASW QGDTKVL VYGPKP T+KNENPEKA
Sbjct: 1 MDIDRDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
C EVIWKPK+GQIGK EKEYEMILK+T+Q+ICVLT+NPNTTTSVI+QVVHDDG+LL CAI
Sbjct: 61 CIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDGALLTCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 609
NAACAALVDAGIPMKHLAVAICCCL++SGYV+LDP KLEE+KM F YLVFPN+ SVL
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLSESGYVILDPTKLEEQKMKGFTYLVFPNSVHSVLQ 180
Query: 610 E----VEGEPVEHGIITSVTHGVMSV 675
+ VEGEP++HGIITSVTHGVMSV
Sbjct: 181 KESVLVEGEPMDHGIITSVTHGVMSV 206
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin;
3 exoribonuclease [Medicago truncatula]
Length = 241
Score = 332 bits (849), Expect = 1e-088
Identities = 161/229 (70%), Positives = 190/229 (82%), Gaps = 7/229 (3%)
Frame = +1
Query: 76 EIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKAC 252
EIDR DGR PNQLRPLACS ++LHR HGSA+W+QG+TKVL VYGPK T+KNENPEKA
Sbjct: 2 EIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKAS 61
Query: 253 FEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAIN 432
EVIWKP +G +G+A++EYEMILKKT++SIC+ T+ PNTTTSVI VVHDDG+LLPCAIN
Sbjct: 62 IEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVI--VVHDDGALLPCAIN 119
Query: 433 AACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLPE 612
AACAALVDAGIP++HLAVAICC + D+ ++LDP+K EE+K AFAYLVFPNTT+SV+PE
Sbjct: 120 AACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNTTVSVVPE 179
Query: 613 ----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKN 747
V +P+ HGIITSVTHG MSVDDY C+E GRA T LS F RKN
Sbjct: 180 KSSQVGNDPMAHGIITSVTHGAMSVDDYLHCLERGRATTQRLSEFLRKN 228
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 299 bits (763), Expect = 1e-078
Identities = 153/241 (63%), Positives = 183/241 (75%), Gaps = 5/241 (2%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VL VYGPKP TRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 606
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 607 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ-QTQGAV*K 777
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q Q G V +
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDVLE 240
Query: 778 H 780
H
Sbjct: 241 H 241
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
Length = 238
Score = 297 bits (759), Expect = 3e-078
Identities = 149/232 (64%), Positives = 179/232 (77%), Gaps = 4/232 (1%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VL VYGPKP TRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 606
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 607 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q+
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQK 232
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica
Group]
Length = 238
Score = 297 bits (759), Expect = 3e-078
Identities = 149/232 (64%), Positives = 179/232 (77%), Gaps = 4/232 (1%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VL VYGPKP TRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 429
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 430 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 606
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 607 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q+
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISHFMRTTLQK 232
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760
[Sorghum bicolor]
Length = 239
Score = 295 bits (754), Expect = 1e-077
Identities = 145/228 (63%), Positives = 178/228 (78%), Gaps = 4/228 (1%)
Frame = +1
Query: 85 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFEV 261
R DGR PNQLRP +C+ N LHR HGSA W+QGDT VL VYGPKP TRK ENPEKA EV
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65
Query: 262 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 441
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSLLPCAINA+C
Sbjct: 66 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPCAINASC 125
Query: 442 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSV---LPE 612
AAL AGIPMKHLAVAICC + D+G V+LD + EE++ +FA+LVFPN+ SV P
Sbjct: 126 AALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSVDSKDPM 185
Query: 613 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
+ E E G+I+ +THG MS D+YF C+E G AA++ +S F RK Q+
Sbjct: 186 QKDEESERGLISCITHGTMSEDNYFNCIERGIAASSKISDFMRKTLQK 233
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum
vulgare subsp. vulgare]
Length = 240
Score = 291 bits (744), Expect = 2e-076
Identities = 145/229 (63%), Positives = 180/229 (78%), Gaps = 4/229 (1%)
Frame = +1
Query: 82 DREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFE 258
+R GR+ NQLR +C+RN L R HGSA W+QGDT VL VYGP+P TRK ENPEKA E
Sbjct: 6 ERAGGRKANQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLE 65
Query: 259 VIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAA 438
V+WKPK+GQIG+ EKEYEM LK+T+QSIC+LTV+PNTTTS+I+QV+ DDGSLLPCAINA+
Sbjct: 66 VVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAINAS 125
Query: 439 CAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSV---LP 609
CAALV AGIPMKHLAVAI C + G V+LD +K EE+++ +FA+LVFPN++LSV P
Sbjct: 126 CAALVFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPNSSLSVDVKEP 185
Query: 610 EVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
+ + E G+ITS+THGVMS DDYF C+E G AA+A +S F R Q+
Sbjct: 186 QQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARISDFMRTTLQK 234
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 290 bits (741), Expect = 4e-076
Identities = 143/228 (62%), Positives = 174/228 (76%), Gaps = 4/228 (1%)
Frame = +1
Query: 85 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFEV 261
R DGR PNQLRP C+ N LHR HGSA W+QGDT VL VYGPKP TRK ENPEKA EV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66
Query: 262 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 441
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSL+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 442 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL---PE 612
AAL AGIPMKHLAVAI C + D+G V+LD ++ EE++ +FA+LVFPN+ SV P
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDPT 186
Query: 613 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
E E G+IT +THG MS DDYF C+E G A++ +S F RK Q+
Sbjct: 187 QRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQK 234
>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
Length = 240
Score = 285 bits (727), Expect = 2e-074
Identities = 141/228 (61%), Positives = 173/228 (75%), Gaps = 4/228 (1%)
Frame = +1
Query: 85 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFEV 261
R DGR PNQLRP C+ N LHR HGSA W+QGDT VL VYGPK TRK ENPEKA EV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 262 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 441
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSL+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 442 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLPE--- 612
AAL AGIPMKHLAVAI C + D+G V+LD ++ EE++ +FA+LVFPN+ SV +
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDTT 186
Query: 613 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 756
E E G+IT +THG MS DDYF C+E G A++ +S F RK Q+
Sbjct: 187 QRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQK 234
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 256
Score = 246 bits (626), Expect = 8e-063
Identities = 123/231 (53%), Positives = 164/231 (70%), Gaps = 5/231 (2%)
Frame = +1
Query: 82 DREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFE 258
+R DGR +QLRPL+ SR +L R HGSA+WSQ +T VL VYGPKP K EN E+A E
Sbjct: 18 ERADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIE 77
Query: 259 VIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAA 438
V+W+ KSG G EK+ E++++++++ I + ++PNT SVI+QV++DDGSLL CA+NAA
Sbjct: 78 VVWRAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACAMNAA 137
Query: 439 CAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLPE-- 612
CAALVDAGIP+ L A+ C + G V LDP K EE+K A+ VFP+ LS +PE
Sbjct: 138 CAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVFPSRRLSAVPELP 197
Query: 613 --VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQT 759
V+GEPVE+GI+TSVT G M V++YF CVEN RAA A +S F R + +Q+
Sbjct: 198 ADVDGEPVEYGILTSVTRGAMEVEEYFSCVENCRAAAAKVSEFSRSSIEQS 248
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa
Japonica Group]
Length = 248
Score = 172 bits (435), Expect = 1e-040
Identities = 84/118 (71%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Frame = +1
Query: 73 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKA 249
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VL VYGPKP TRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 250 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 423
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGS+ C
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSVSFC 118
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 140
Score = 145 bits (364), Expect = 2e-032
Identities = 71/90 (78%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Frame = +1
Query: 148 RPHGSASWSQGDTKVL-VVYGPKPVTRKNENPEKACFEVIWKPKSGQIGKAEKEYEMILK 324
R G + +GDTKVL VYGPK T+KNEN EKACFEVIWKPK+GQIGK EKEYEMILK
Sbjct: 20 RSTGDRRYEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIGKVEKEYEMILK 79
Query: 325 KTIQSICVLTVNPNTTTSVIIQVVHDDGSL 414
+T+QSICVLTVNPNTTTSVIIQVVHDDGS+
Sbjct: 80 RTMQSICVLTVNPNTTTSVIIQVVHDDGSI 109
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial
[Saccoglossus kowalevskii]
Length = 198
Score = 142 bits (356), Expect = 2e-031
Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
Frame = +1
Query: 109 QLRPLACSRNILHRPHGSASWSQGDTKVLV-VYGPKPVTRKNENPEKACFEVIWKPKSGQ 285
+LR +C +N+L RP GSA++ QGDT V+V VYGP V + E +KA EVI+KPK G
Sbjct: 12 ELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPKVGI 71
Query: 286 IGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGI 465
G +EK E +++ T ++I + ++P ++ ++IIQV+H+ GSLL C +N+ C AL+DAG+
Sbjct: 72 PGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVMHNAGSLLSCCVNSTCMALLDAGL 131
Query: 466 PMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVF 582
PM L A+ C L+ G ++LDP +EK+ A VF
Sbjct: 132 PMSCLVAAVTCSLSCDGDIILDPTSQQEKEAKAILTFVF 170
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
Length = 235
Score = 141 bits (354), Expect = 3e-031
Identities = 74/152 (48%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Frame = +1
Query: 112 LRPLACSRNILHRPHGSASWSQGDTKVLV-VYGPKPVTRKNENPEKACFEVIWKPKSGQI 288
LR AC +N+L RP GSAS+ QGDT VL VYGP V E KA EVI +PK G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 289 GKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIP 468
G AEK E +++ T +++ + T++P T+ +V++QVV D GSLL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 469 MKHLAVAICCCLADSGYVVLDPNKLEEKKMTA 564
M+ L + C L G +VLDP +EK+ A
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARA 179
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,773,732,627
Number of Sequences: 15229318
Number of Extensions: 273773732627
Number of Successful Extensions: 81594205
Number of sequences better than 0.0: 0
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