BLASTX 7.6.2
Query= UN02710 /QuerySize=943
(942 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 305 3e-083
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 169 2e-042
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 159 4e-039
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 126 3e-029
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 112 5e-025
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 67 1e-011
TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPR... 67 1e-011
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 305 bits (780), Expect = 3e-083
Identities = 155/199 (77%), Positives = 171/199 (85%), Gaps = 10/199 (5%)
Frame = +1
Query: 250 QPQMVPGMRPGYF-GPMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQVMAGGRGHR 426
QPQ+VPGMRP +F GPMMQPGQQGPRPGGRRSGDGPMRHQ QQPMPYMQPQ+M GRG+R
Sbjct: 465 QPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYR 524
Query: 427 YPR-GRNMPDGPMPGGMVPFPYDINGVPI---MPAGALASSLAQASPAHQRTILGETLYP 594
YP GRNMPDGPMPGGMVP YD+N +P M AG LA+SLA A+PA QRT+LGE+LYP
Sbjct: 525 YPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQRTLLGESLYP 584
Query: 595 LVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPGE-----G 759
LV++IE E+AAKVTGMLLEMDQTEVLHL+ESPEALNAKVSEALDVLRNVNQP
Sbjct: 585 LVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGN 644
Query: 760 KSGSPSDMMASLSINDHL* 816
KSGSPSD++ASLSINDHL*
Sbjct: 645 KSGSPSDLLASLSINDHL* 663
Score = 156 bits (392), Expect = 3e-038
Identities = 73/86 (84%), Positives = 78/86 (90%)
Frame = +2
Query: 2 SRVLNETNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGMGPRMPMFPGGAPG 181
SRVLNE NGKMV GKPLYVALAQRKEERRAKLQAQFSQMRPAFIPG+GPRMP+F GGAPG
Sbjct: 382 SRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPG 441
Query: 182 LGQPMFYGQGPPQMIPHQAGFGISPR 259
LGQ +FYGQGPP +IPHQ GFG P+
Sbjct: 442 LGQQIFYGQGPPPIIPHQPGFGYQPQ 467
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 169 bits (428), Expect = 2e-042
Identities = 102/182 (56%), Positives = 122/182 (67%), Gaps = 18/182 (9%)
Frame = +1
Query: 226 PSPGWIWNQPQMVPGMRPG------YFGPMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPY 387
P PG+ + Q Q+VPGMRPG +F PM+QP QQ RPGG R G Q Q PM
Sbjct: 449 PQPGYGYQQ-QLVPGMRPGGGPVPSFFMPMVQPQQQ--RPGGGRRPGGIQHSQQQNPM-- 503
Query: 388 MQPQVMAGGRGHRYPRGRNMPDGPMPGGMVPFPYDINGVPIMPAGALASSLAQASPAHQR 567
MQ Q+ GR RYP+GR G VP PYD+ + GALAS+L+ A+P QR
Sbjct: 504 MQQQMHPRGRMFRYPQGRG------GSGDVP-PYDMGNNMPLTIGALASNLSNATPEQQR 556
Query: 568 TILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQ 747
T+LGE LYPLV ++E E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V
Sbjct: 557 TMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAA 616
Query: 748 PG 753
G
Sbjct: 617 GG 618
Score = 114 bits (284), Expect = 1e-025
Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 SRVLNETNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGMGPRMPMFPGGAP 178
+ +++ +GKM+ KPLYVA+AQRKE+RR +LQAQFSQ+RP A P +GPRMP++P G P
Sbjct: 372 TEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGP 431
Query: 179 GLGQPMFYGQGPPQMIPHQAGFG 247
G+GQ MFYGQ PP MIP Q G+G
Sbjct: 432 GIGQQMFYGQAPPAMIPPQPGYG 454
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 159 bits (400), Expect = 4e-039
Identities = 101/196 (51%), Positives = 126/196 (64%), Gaps = 21/196 (10%)
Frame = +1
Query: 262 VPGMRPGYFGPMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQVMAGGRGHRYP-RG 438
+P M+ G Q QQ RPGG R G P QPQQP P MQ Q+ GR +RYP R
Sbjct: 483 MPMMQQGQ--QQQQQQQQQQRPGGGRRGALP---QPQQPSPMMQQQMHPRGRMYRYPQRD 537
Query: 439 RNMPDGPMPGGMVPFPYDIN---GV--------PIMPAGALASSLAQASPAHQRTILGET 585
N GP M+ PYD++ GV +P ALA+ LA A+P QRT+LGE
Sbjct: 538 VNTMPGPTQ-NMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGEN 596
Query: 586 LYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPGEGKS 765
LYPLV ++E E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V Q ++
Sbjct: 597 LYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQ---QA 653
Query: 766 GSPSDMMASLSINDHL 813
G +D +ASLS+ D++
Sbjct: 654 GGAADQLASLSLGDNI 669
Score = 112 bits (280), Expect = 3e-025
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 SRVLNETNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRPAFI-PGMGPRMPMFPGGAP 178
+R + E NGKM+ KPLYVALAQRKE+R+A+LQAQFSQMRP + P +GPRM M+P G P
Sbjct: 381 TRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGP 440
Query: 179 GLGQPMFYGQGPPQMIPHQAGFG 247
+GQ +FYGQGPP MIP Q GFG
Sbjct: 441 PMGQQLFYGQGPPAMIP-QPGFG 462
Score = 60 bits (143), Expect = 2e-009
Identities = 42/92 (45%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Frame = +1
Query: 253 PQMVPG--MRPGYFGPMMQPG-------QQGPRPGGRRSGDGPMRHQPQQPMPYMQPQVM 405
P M PG P +F PMMQ G QQ RPGG R G P QPQQP P MQ Q+
Sbjct: 469 PGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALP---QPQQPSPMMQQQMH 525
Query: 406 AGGRGHRYP-RGRNMPDGPMPGGMVPFPYDIN 498
GR +RYP R N GP M+ PYD++
Sbjct: 526 PRGRMYRYPQRDVNTMPGPTQ-NMLSVPYDVS 556
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 126 bits (314), Expect = 3e-029
Identities = 81/185 (43%), Positives = 98/185 (52%), Gaps = 22/185 (11%)
Frame = +1
Query: 250 QPQMVPGMRPGYFG-------PMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQVMA 408
Q Q +PGMRPG P+ + Q GPR G RR + + QQ M
Sbjct: 472 QVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFM 531
Query: 409 GGRGHRYPRGRNMPDGPMPGGMVPFPYDING-----------VPIMPAGALASSLAQASP 555
GG G+R RN + P G++P P + + + LAS LA ASP
Sbjct: 532 GGAGNR----RNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASP 587
Query: 556 AHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLR 735
+LG+ LYPLV + E NAAKVTGMLLEMDQ E+LHL+ESPEAL AKVSEALDVLR
Sbjct: 588 DKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLR 647
Query: 736 NVNQP 750
P
Sbjct: 648 RSADP 652
Score = 62 bits (150), Expect = 4e-010
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Frame = +2
Query: 11 LNETNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMR-PAFIPGMGPRMPMF---PGGAP 178
+ E NGKM+ KPLYVALAQRKEER+A LQ+ F+Q+R P + + M F P G P
Sbjct: 385 MKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGP 444
Query: 179 --GLGQPMFYGQGPPQMIPHQ-AGFG 247
G PMF G ++P Q G+G
Sbjct: 445 MSGPHHPMFIGHNGQGLVPSQPMGYG 470
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 112 bits (278), Expect = 5e-025
Identities = 65/132 (49%), Positives = 81/132 (61%), Gaps = 11/132 (8%)
Frame = +1
Query: 355 MRHQPQQPMPYMQPQVMAGGRGHRYPRGRNMPDGPMPGGMVPFPYDINGV-----PIMPA 519
M P M YM G R ++P G +P ++P P D + + P++P
Sbjct: 519 MHRNPSPGMRYMN-----GASNGRNGMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPI 572
Query: 520 GALASSLAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEAL 699
L SSLA ASPA + +LGE LYPLV + E + AKVTGMLLEMDQ E+LHL+ESPEAL
Sbjct: 573 SKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEAL 632
Query: 700 NAKVSEALDVLR 735
+KVSEALDVLR
Sbjct: 633 KSKVSEALDVLR 644
Score = 76 bits (186), Expect = 2e-014
Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Frame = +2
Query: 5 RVLNETNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGMGPRMPMFPGG-APG 181
R L+E NGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R PG PGG PG
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR---APGPMSGFHHPPGGPMPG 443
Query: 182 LGQPMFYGQGPPQMIPHQ-AGFGISPRW 262
Q M+ GQ M+P Q G+G P++
Sbjct: 444 PPQHMYVGQNGASMVPSQPIGYGFQPQF 471
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 67 bits (162), Expect = 1e-011
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Frame = +1
Query: 571 ILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLR----N 738
+LGE L+PLV K+E + A K+TGMLLEMD++E+L L++SPE L +V EA +VL+ N
Sbjct: 528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTN 587
Query: 739 VNQPGEGKSGSPSDMMASLSI 801
+ P +S + +A +SI
Sbjct: 588 LTAPNTHRSDYLASGIAGVSI 608
>TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPRESSED PAB
C-TERMINAL); poly(A) binding | chr3:6705526-6705929 FORWARD
Length = 104
Score = 67 bits (162), Expect = 1e-011
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +1
Query: 538 LAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSE 717
LA P QR ++GETL+ +V ++E + A K+TGM+LE+DQ +VLHL+ +P+A V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 718 ALDVL 732
A++VL
Sbjct: 83 AMEVL 87
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,064,195,100
Number of Sequences: 33410
Number of Extensions: 2064195100
Number of Successful Extensions: 69417967
Number of sequences better than 0.0: 0
|
