BLASTX 7.6.2
Query= UN02748 /QuerySize=1398
(1397 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G23700.1 | Symbols: | S1 RNA-binding domain-c... 577 7e-165
TAIR9_protein||AT1G12800.1 | Symbols: | S1 RNA-binding domain-c... 87 2e-017
TAIR9_protein||AT5G30510.1 | Symbols: RPS1, ARRPS1 | RPS1 (RIBOS... 85 1e-016
TAIR9_protein||AT4G29060.1 | Symbols: emb2726 | emb2726 (embryo ... 60 4e-009
TAIR9_protein||AT4G29060.2 | Symbols: emb2726 | emb2726 (embryo ... 60 4e-009
>TAIR9_protein||AT3G23700.1 | Symbols: | S1 RNA-binding domain-containing
protein | chr3:8531689-8533742 REVERSE
Length = 393
Score = 577 bits (1486), Expect = 7e-165
Identities = 294/322 (91%), Positives = 305/322 (94%), Gaps = 7/322 (2%)
Frame = +3
Query: 249 SSDQSLLRDTSND---AGPSRMSTDWKLAKAYCKSGDTFEGEVEGFNGGGLLIRFHSLVG 419
S+ SLLRDTS++ AGPS DWK AKAYCKSGDTFEGEV+GFNGGGLLIRFHSLVG
Sbjct: 76 SASNSLLRDTSDEASAAGPS----DWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVG 131
Query: 420 FLPYPQLSPSRSCREPQKSIHEIAKTLVGSVLPVKVVQADEENKKLILSEKLALWPKYSQ 599
FLPYPQLSPSRSC+EPQKSIHEIAKTLVGS LPVKVVQADEEN+KLILSEKLALWPKYSQ
Sbjct: 132 FLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQ 191
Query: 600 NVNVGDIFTGRVGSVEDYGAFIHMRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEV 779
NVNVGD+F GRVGSVEDYGAFIH+RFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEV
Sbjct: 192 NVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEV 251
Query: 780 RVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSGGSPSLSSNNGDTIEPLPGLE 959
RVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSS GSPSLSSNNGDTIEPLPGLE
Sbjct: 252 RVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLE 311
Query: 960 TILEELLQEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSEGKFVLLARAGRQVQGIHL 1139
TILEELL+EDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPS+GKFVLLARAGRQVQ IHL
Sbjct: 312 TILEELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQVQEIHL 371
Query: 1140 TTSLDQQGIKKALQRVLERVP* 1205
TTSL+Q GIKKALQ VLERVP*
Sbjct: 372 TTSLEQGGIKKALQHVLERVP* 393
Score = 92 bits (227), Expect = 7e-019
Identities = 51/69 (73%), Positives = 58/69 (84%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MAVFGGA-NLGSVSFSSHLLNQQSCFLSCPLR-LPSSSSSSSNKTSLLFVVKSFSGSVTA 236
MAVF GA LGSVSF+SHL +QQS FLSCPLR LPSSSSSSSN+ SL+ +VKSFS S TA
Sbjct: 1 MAVFSGATTLGSVSFASHLFDQQSTFLSCPLRLLPSSSSSSSNRNSLVCIVKSFSSSATA 60
Query: 237 NTDTSSDQS 263
+TD +SDQS
Sbjct: 61 DTDRNSDQS 69
>TAIR9_protein||AT1G12800.1 | Symbols: | S1 RNA-binding domain-containing
protein | chr1:4361778-4365189 REVERSE
Length = 768
Score = 87 bits (214), Expect = 2e-017
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 22/247 (8%)
Frame = +3
Query: 459 REPQKSIHEIAKTLVGSVLPVKVVQADEENKKLILS-------EKLALWPKYSQNVNVGD 617
RE QK + + VG + V VV A+ ++KLI S E++ + VGD
Sbjct: 528 REKQKFL----SSFVGQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGD 583
Query: 618 IFTGRVGSVEDYGAFIHMRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTN 797
+ + + +G F L + LVH SEVSWD D + G V V
Sbjct: 584 VVKCCIKKITYFGIFCE------LEGVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQ 637
Query: 798 IDKEKSRITLSIKQLEDDPLLETLDKVILKDSSGGSPSLSSNNGDTIEPLPGLETILEEL 977
+D RI LS+K++ DPL E L+ V+ D+ L + D P +E++++EL
Sbjct: 638 LDFALERIFLSLKEITPDPLTEALESVVGGDNDQLGGRLQAAELDA--EWPDVESLIKEL 695
Query: 978 LQEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSEGKFVLLARAGRQVQGIHLTTSLDQ 1157
+GI++V +R F ++ Q++++ P E ++ LLARAG +VQ + + SL +
Sbjct: 696 EMVEGIQSVSKSR-FFLSPGLAPTFQVYMA--PMFENQYKLLARAGNRVQELIVEASLSK 752
Query: 1158 QGIKKAL 1178
+ +K +
Sbjct: 753 EEMKSTI 759
>TAIR9_protein||AT5G30510.1 | Symbols: RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN
S1); RNA binding / structural constituent of ribosome |
chr5:11619262-11621223 REVERSE
Length = 417
Score = 85 bits (208), Expect = 1e-016
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 7/129 (5%)
Frame = +3
Query: 468 QKSIHEIAKTLVGSVLPVKVVQADEENKKLILSEKLALWPKYSQNVNVGDIFTGRVGSVE 647
Q S A+ L+ +P+K V+ DEE KL+LS + A+ +Q + +G + G V S++
Sbjct: 217 QISSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQ-LGIGSVVLGVVQSLK 275
Query: 648 DYGAFIHMRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITL 827
YGAFI + + GL+HVS++S D V D+ VL+ GD ++V++ + D+++ R++L
Sbjct: 276 PYGAFI------DIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSL 329
Query: 828 SIKQLEDDP 854
S K+LE P
Sbjct: 330 STKKLEPTP 338
>TAIR9_protein||AT4G29060.1 | Symbols: emb2726 | emb2726 (embryo defective
2726); RNA binding / translation elongation factor |
chr4:14317744-14321315 FORWARD
Length = 954
Score = 60 bits (143), Expect = 4e-009
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Frame = +3
Query: 612 GDIFTGRVGSVEDYGAFIHMRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIV 791
G FTG+V +++ +GAF+ D G + GLVHVS++S ++V+DV V+ G EV+V +
Sbjct: 136 GATFTGKVRAIQPFGAFV----DFGAF-TDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRL 190
Query: 792 TNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSGGSPSLSSNNG 929
D E RI+L++++ +D P ++ K SGG S G
Sbjct: 191 VEADIESKRISLTMRENDDPPKRQSGGSD--KPRSGGKRDGSKGGG 234
>TAIR9_protein||AT4G29060.2 | Symbols: emb2726 | emb2726 (embryo defective
2726); RNA binding / translation elongation factor |
chr4:14317744-14321315 FORWARD
Length = 710
Score = 60 bits (143), Expect = 4e-009
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Frame = +3
Query: 612 GDIFTGRVGSVEDYGAFIHMRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIV 791
G FTG+V +++ +GAF+ D G + GLVHVS++S ++V+DV V+ G EV+V +
Sbjct: 136 GATFTGKVRAIQPFGAFV----DFGAF-TDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRL 190
Query: 792 TNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSGGSPSLSSNNG 929
D E RI+L++++ +D P ++ K SGG S G
Sbjct: 191 VEADIESKRISLTMRENDDPPKRQSGGSD--KPRSGGKRDGSKGGG 234
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,064,195,100
Number of Sequences: 33410
Number of Extensions: 2064195100
Number of Successful Extensions: 69417967
Number of sequences better than 0.0: 0
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