BLASTX 7.6.2
Query= UN03216 /QuerySize=1606
(1605 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|18394237|ref|NP_563974.1| peptide deformylase 1A [Arabidopsis... 429 8e-118
gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT... 429 8e-118
gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polyp... 419 6e-115
gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putati... 359 1e-096
gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas] 346 9e-093
gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Defor... 346 1e-092
gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus tr... 344 3e-092
gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein... 328 2e-087
gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName: Full=Peptide deform... 315 1e-083
gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicag... 292 2e-076
gi|226510000|ref|NP_001140879.1| hypothetical protein LOC1002729... 287 5e-075
gi|226729275|sp|B6RGY0.1|DEF1A_ORYSJ RecName: Full=Peptide defor... 285 1e-074
gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT... 285 1e-074
gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare ... 277 7e-072
gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis] 270 5e-070
gi|255629341|gb|ACU15015.1| unknown [Glycine max] 268 3e-069
gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryz... 240 5e-061
gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula] 225 3e-056
gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas p... 185 3e-044
gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japo... 184 4e-044
>gi|18394237|ref|NP_563974.1| peptide deformylase 1A [Arabidopsis thaliana]
Length = 269
Score = 429 bits (1102), Expect = 8e-118
Identities = 218/264 (82%), Positives = 238/264 (90%), Gaps = 5/264 (1%)
Frame = +3
Query: 42 METLFRFSLRLLPVSAAVTRRAIHFPVSRPSPSHFLNRSSSSLYKFSSSSSSVKTNAGWL 221
METLFR SLRLLPVSAAVT R+I FPVSRP SH LNR +L +SSSSS+ T AGWL
Sbjct: 11 METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLP--TSSSSSLSTKAGWL 68
Query: 222 LGLGDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGV 401
LGLG+ KKK+ +LP+IVA+GDPVLHEKAREVDP EIGSER+Q+IIDDM+KVMRLAPGV
Sbjct: 69 LGLGE---KKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGV 125
Query: 402 GLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF 581
GLAAPQIG+PLRIIVLEDTKEYISYAPKEE+LAQ+RR FDLMVMVNP LK SNKKALFF
Sbjct: 126 GLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFF 185
Query: 582 *GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMI 761
GCLSVDGFRA VERYLEV VTGYDRQG+RI+VNASGWQARILQHECDHLDGNLYVDKM+
Sbjct: 186 EGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMV 245
Query: 762 PRTFRTVDNLDLPLADGCPKLGPR 833
PRTFRTVDNLDLPLA+GCPKLGP+
Sbjct: 246 PRTFRTVDNLDLPLAEGCPKLGPQ 269
>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826
[Arabidopsis lyrata subsp. lyrata]
Length = 270
Score = 429 bits (1102), Expect = 8e-118
Identities = 222/270 (82%), Positives = 241/270 (89%), Gaps = 6/270 (2%)
Frame = +3
Query: 24 QATTRTMETLFRFSLRLLPVSAAVTRRAIHFPVSRPSPSHFLNRSSSSLYKFSSSSSSVK 203
QAT M TLFR SL LLPVSAAVT R+I FPVSRPS SH LNR +L SSSSSS+
Sbjct: 7 QAT--AMGTLFRVSLGLLPVSAAVTCRSIRFPVSRPSSSHLLNRKLYNL-PSSSSSSSLS 63
Query: 204 TNAGWLLGLGDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVM 383
T AGWLLGLG+ KKK+ +LP+IVAAGDPVLHEKAREVDPEEIGSER+Q+IIDDM+KVM
Sbjct: 64 TKAGWLLGLGE---KKKKVDLPEIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVM 120
Query: 384 RLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSN 563
RLAPGVGLAAPQIG+PLRIIVLEDTKEYISYAPKEE+LAQ+RR FDLMVMVNP LK SN
Sbjct: 121 RLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSN 180
Query: 564 KKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNL 743
KKALFF GCLSV+GFRA VERYLEV VTGYDRQG+RI+VNASGWQARILQHECDHLDGNL
Sbjct: 181 KKALFFEGCLSVNGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNL 240
Query: 744 YVDKMIPRTFRTVDNLDLPLADGCPKLGPR 833
YVDKM+PRTFRTVDNLDLPLA+GCPKLGP+
Sbjct: 241 YVDKMVPRTFRTVDNLDLPLAEGCPKLGPQ 270
>gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide
Deformylase from Chlamydia pneumoniae genome gb|AE001687 [Arabidopsis
thaliana]
Length = 259
Score = 419 bits (1077), Expect = 6e-115
Identities = 213/259 (82%), Positives = 233/259 (89%), Gaps = 5/259 (1%)
Frame = +3
Query: 57 RFSLRLLPVSAAVTRRAIHFPVSRPSPSHFLNRSSSSLYKFSSSSSSVKTNAGWLLGLGD 236
R SLRLLPVSAAVT R+I FPVSRP SH LNR +L +SSSSS+ T AGWLLGLG+
Sbjct: 6 RVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLP--TSSSSSLSTKAGWLLGLGE 63
Query: 237 NKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAP 416
KKK+ +LP+IVA+GDPVLHEKAREVDP EIGSER+Q+IIDDM+KVMRLAPGVGLAAP
Sbjct: 64 ---KKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAP 120
Query: 417 QIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLS 596
QIG+PLRIIVLEDTKEYISYAPKEE+LAQ+RR FDLMVMVNP LK SNKKALFF GCLS
Sbjct: 121 QIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLS 180
Query: 597 VDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFR 776
VDGFRA VERYLEV VTGYDRQG+RI+VNASGWQARILQHECDHLDGNLYVDKM+PRTFR
Sbjct: 181 VDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFR 240
Query: 777 TVDNLDLPLADGCPKLGPR 833
TVDNLDLPLA+GCPKLGP+
Sbjct: 241 TVDNLDLPLAEGCPKLGPQ 259
>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus
communis]
Length = 266
Score = 359 bits (919), Expect = 1e-096
Identities = 190/269 (70%), Positives = 213/269 (79%), Gaps = 12/269 (4%)
Frame = +3
Query: 42 METLFRFSLRLLPVSAA--VTRRAIHFPVSR-----PSPSHFLNRSSSSLYKFSSSSSSV 200
METL RFSLRLLP+S A + H P+ R S F S+ + S SSSS+
Sbjct: 1 METLHRFSLRLLPISLADKCLKPTKHHPIYRLTRIPISKPDFRTTIPYSITRKSLSSSSI 60
Query: 201 KTNAGWLLGLGDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKV 380
AGWLLGLG+NKK +LPDIV AGDPVLHE AREVDP+EIGSER+Q+IIDDMVKV
Sbjct: 61 -AKAGWLLGLGENKK----MSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKV 115
Query: 381 MRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVS 560
MR APGVGLAAPQIG+PLRIIVLEDT EYI YAPKEE AQ RRPFDL+V++NP+LK
Sbjct: 116 MRRAPGVGLAAPQIGVPLRIIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKG 175
Query: 561 NKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGN 740
N+ ALFF GCLSVDGFRAVVER LEVEV+G DR G+ I+V+ASGWQARILQHECDHLDG
Sbjct: 176 NRTALFFEGCLSVDGFRAVVERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGT 235
Query: 741 LYVDKMIPRTFRTVDNLDLPLADGCPKLG 827
LYVDKM+PRTFRTVDNLDLPLA+GCP LG
Sbjct: 236 LYVDKMVPRTFRTVDNLDLPLAEGCPNLG 264
>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
Length = 274
Score = 346 bits (886), Expect = 9e-093
Identities = 177/259 (68%), Positives = 205/259 (79%), Gaps = 10/259 (3%)
Frame = +3
Query: 72 LLPVSAAVTRRAIHFPVSR-----PSPSHFLNRSSSSLYKFSSSSSSVKTNAGWLLGLGD 236
L P + V R P+SR S FL+ + S + +S SSS+ AGW LGLG+
Sbjct: 21 LNPYTHGVPRAVTLAPLSRFARMSISKPEFLSSNPKSTF-HNSFSSSLTAKAGWFLGLGE 79
Query: 237 NKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAP 416
KK+T+ PDIV AGDPVLHE AREVDPEEIGSER+Q+IIDDM+K MR+APGVGLAAP
Sbjct: 80 ----KKKTSFPDIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAP 135
Query: 417 QIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLS 596
QIG+PLRIIVLEDTKEYI YAPKEE AQ RRPFDL+V++NP+L+ SN+ A FF GCLS
Sbjct: 136 QIGVPLRIIVLEDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLS 195
Query: 597 VDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFR 776
VDGFRAVVERYL+VEVTG R G+ I+VNASGWQARILQHECDHLDG LYVDKM+PRTFR
Sbjct: 196 VDGFRAVVERYLDVEVTGLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKMVPRTFR 255
Query: 777 TVDNLDLPLADGCPKLGPR 833
T++NLDLPLA+GCP LG R
Sbjct: 256 TIENLDLPLAEGCPNLGAR 274
>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From
Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
Length = 197
Score = 346 bits (885), Expect = 1e-092
Identities = 168/189 (88%), Positives = 181/189 (95%)
Frame = +3
Query: 261 NLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRI 440
+LP+IVA+GDPVLHEKAREVDP EIGSER+Q+IIDDM+KVMRLAPGVGLAAPQIG+PLRI
Sbjct: 2 DLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRI 61
Query: 441 IVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVV 620
IVLEDTKEYISYAPKEE+LAQ+RR FDLMVMVNP LK SNKKALFF GCLSVDGFRA V
Sbjct: 62 IVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAV 121
Query: 621 ERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLP 800
ERYLEV VTGYDRQG+RI+VNASGWQARILQHECDHLDGNLYVDKM+PRTFRTVDNLDLP
Sbjct: 122 ERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDLP 181
Query: 801 LADGCPKLG 827
LA+GCPKLG
Sbjct: 182 LAEGCPKLG 190
>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
Length = 299
Score = 344 bits (881), Expect = 3e-092
Identities = 182/278 (65%), Positives = 208/278 (74%), Gaps = 26/278 (9%)
Frame = +3
Query: 42 METLFRFSLRLLPVSAA--------------VTRRAIHFPVSRPSPSHFLNRSSSSLYKF 179
ME+L R SLRLLP+S A TR + P HF R
Sbjct: 34 MESLHRCSLRLLPISLAEKCFKPTTLPTIFRFTRMLVPKPEFMNPNPHFTTR-------- 85
Query: 180 SSSSSSVKTNAGWLLGLGDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRI 359
S SSS AGWLLG+G+ KK+T+LPDIV AGDPVLHE AREVDP+EIGSER+Q+I
Sbjct: 86 KSLSSSHTAKAGWLLGMGE----KKKTSLPDIVKAGDPVLHEPAREVDPKEIGSERIQKI 141
Query: 360 IDDMVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVN 539
IDDMVKVMR+APGVGLAAPQIGIPLRIIVLEDT EYI YAPK E AQ RRPFDL+V+VN
Sbjct: 142 IDDMVKVMRMAPGVGLAAPQIGIPLRIIVLEDTAEYIGYAPKNETKAQDRRPFDLLVIVN 201
Query: 540 PELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHE 719
P+LK SN+ A FF GCLSVDGFRA+VER+L+VEV G R G+ I+V+ASGWQARILQHE
Sbjct: 202 PKLKKKSNRTAFFFEGCLSVDGFRAIVERHLDVEVIGLSRDGQPIKVDASGWQARILQHE 261
Query: 720 CDHLDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGPR 833
CDHL+G LYVDKM+PRTFRTV+NLDLPLA+GCP+ G R
Sbjct: 262 CDHLEGTLYVDKMVPRTFRTVENLDLPLAEGCPEPGSR 299
>gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 277
Score = 328 bits (839), Expect = 2e-087
Identities = 166/241 (68%), Positives = 198/241 (82%), Gaps = 8/241 (3%)
Frame = +3
Query: 117 PVSRPSPSHFLNR--SSSSLYKFSSSSSSVKTNAGWLLGLGDNKKKKKQTNLPDIVAAGD 290
P S+P PS NR S+ Y+ SSSSS++ +AGW+LGLGD K+ LP+IV AGD
Sbjct: 43 PTSKPGPSD-PNRIFSTRKTYRPSSSSSTLIASAGWILGLGD-----KKPALPEIVKAGD 96
Query: 291 PVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYI 470
PVLHE A+EV+P EIGS+R+Q+IIDDM+K MR APGVGLAAPQIGIPLRIIVLEDTKEYI
Sbjct: 97 PVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVLEDTKEYI 156
Query: 471 SYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTG 650
SY K+ + AQ+RRPFDL+V++NP+L+ N+ A FF GCLSVDGFRAVVER+L+VEVTG
Sbjct: 157 SYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERHLQVEVTG 216
Query: 651 YDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGP 830
R G+ I+V+ASGW+ARILQHECDHLDG LYVDKM+PRTFRTV N+DLPLA GCPKLG
Sbjct: 217 LSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKMVPRTFRTVQNIDLPLAVGCPKLGA 276
Query: 831 R 833
R
Sbjct: 277 R 277
>gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A,
chloroplastic; Short=PDF 1A; AltName: Full=Polypeptide deformylase;
Flags: Precursor
Length = 277
Score = 315 bits (807), Expect = 1e-083
Identities = 157/212 (74%), Positives = 179/212 (84%), Gaps = 4/212 (1%)
Frame = +3
Query: 192 SSVKTNAGWLLGLGDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDM 371
SS AGW LGLG+ KK+ +PDIV AGDPVLHE ++++ EEIGSER+Q+II++M
Sbjct: 68 SSATARAGWFLGLGEKKKQA----MPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEM 123
Query: 372 VKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELK 551
VKVMR APGVGLAAPQIGIPL+IIVLEDT EYISYAPK+E AQ RRPF L+V++NP+LK
Sbjct: 124 VKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLK 183
Query: 552 GVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHL 731
NK ALFF GCLSVDGFRAVVER+LEVEVTG DR G+ I+V+ASGWQARILQHE DHL
Sbjct: 184 KKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHL 243
Query: 732 DGNLYVDKMIPRTFRTVDNLDLPLADGCPKLG 827
DG LYVDKM PRTFRTV+NLDLPLA GCPKLG
Sbjct: 244 DGTLYVDKMAPRTFRTVENLDLPLAAGCPKLG 275
>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
Length = 257
Score = 292 bits (746), Expect = 2e-076
Identities = 151/238 (63%), Positives = 180/238 (75%), Gaps = 5/238 (2%)
Frame = +3
Query: 120 VSRPSPSHFLNRSSSSLYKFSSSSSSVKTNAGWLLGLGDNKKKKKQTNLPDIVAAGDPVL 299
VS S S N+ S KFS S++ + + L +K LP IV AGDPV+
Sbjct: 24 VSLSSSSSCNNKIQLSSTKFSKFGSTLSSPSSETALL-----RKTVNKLPYIVKAGDPVI 78
Query: 300 HEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYA 479
HE AREVD EI S+++Q IIDDM+ VMR APGVG+AAPQIGIPLRIIVLED +E+I Y
Sbjct: 79 HEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLEDKEEFICYN 138
Query: 480 PKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYDR 659
+EE AQ RRPFDL+V++NP+LK SN+ A FF GCLSVD F+A+VERYL+VEVTG+DR
Sbjct: 139 TEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYLDVEVTGFDR 198
Query: 660 QGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGPR 833
GE I++NASGWQARILQHECDHLDG LYVDKM+PRTFR+ N+DLPLA GCPKLGPR
Sbjct: 199 YGEPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRSWKNVDLPLARGCPKLGPR 256
>gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays]
Length = 256
Score = 287 bits (733), Expect = 5e-075
Identities = 152/257 (59%), Positives = 186/257 (72%), Gaps = 8/257 (3%)
Frame = +3
Query: 72 LLPVSAAVTRRAIHFPVSRPSPSHFLNRSSSSLYKFSSSSSSVKTNAGWLLGLGDNKKKK 251
L P+SAA T ++ +P + S+SS+ S GWL GL K
Sbjct: 5 LRPLSAAAT-----LLLAPATPLTGSSVSASSVGGRRWRSVRADAGGGWLSGLLGGKGGG 59
Query: 252 KQTNL---PDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQI 422
T + P V AGDPVLHE A+EV P ++ SE+VQ +ID MV VMR APGVGLAAPQI
Sbjct: 60 ASTAMMVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQI 119
Query: 423 GIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVD 602
G+PLRIIVLEDT+EYISYAPK+++ AQ RRPFDL+V++NP++K S + ALFF GCLSVD
Sbjct: 120 GVPLRIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVD 179
Query: 603 GFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTV 782
G+RAVVER+L+VEV+G DR G ++V ASGWQARILQHECDHL+G LYVDKM+ RTFR V
Sbjct: 180 GYRAVVERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKMVARTFRVV 239
Query: 783 DNLDLPLADGCPKLGPR 833
+NLDLPL GCP+LG R
Sbjct: 240 ENLDLPLPTGCPQLGAR 256
>gi|226729275|sp|B6RGY0.1|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A,
chloroplastic; Short=OsPDF1A; Short=PDF 1A; Flags: Precursor
Length = 260
Score = 285 bits (729), Expect = 1e-074
Identities = 145/221 (65%), Positives = 172/221 (77%), Gaps = 7/221 (3%)
Frame = +3
Query: 192 SSVKTNA---GWLLGL----GDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERV 350
SSV+ +A GWL GL G T P V AGDPVLHE A++V P +I SE+V
Sbjct: 40 SSVRASAGGGGWLSGLLGGKGGGGAPTAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKV 99
Query: 351 QRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMV 530
Q +ID MV VMR APGVGLAAPQIG+PL+IIVLEDT+EYISYAPK+++ AQ RRPFDL+V
Sbjct: 100 QGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLV 159
Query: 531 MVNPELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARIL 710
++NP+LK S + ALFF GCLSVDG+RA+VER+L+VEV+G DR G I+V ASGWQARIL
Sbjct: 160 IINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARIL 219
Query: 711 QHECDHLDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGPR 833
QHECDHL+G LYVD M+PRTFR VDNLDLPL GCP +G R
Sbjct: 220 QHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIGAR 260
>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130
[Sorghum bicolor]
Length = 193
Score = 285 bits (729), Expect = 1e-074
Identities = 137/189 (72%), Positives = 161/189 (85%)
Frame = +3
Query: 267 PDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIV 446
P V AGDPVLHE A+EV P ++ SE+VQ IID MV VMR APGVGLAAPQIG+PLRIIV
Sbjct: 5 PGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPLRIIV 64
Query: 447 LEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVER 626
LEDT+EYISYAPK+E+ AQ RRPFDL++++NP++K S + ALFF GCLSVDG+RAVVER
Sbjct: 65 LEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRAVVER 124
Query: 627 YLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPLA 806
+L+VEV+G DR G I+V ASGWQARILQHECDHL+G LYVD+M+PRTFR VDNLDLPL
Sbjct: 125 HLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVPRTFRIVDNLDLPLP 184
Query: 807 DGCPKLGPR 833
GCP+LG R
Sbjct: 185 IGCPQLGAR 193
>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 259
Score = 277 bits (706), Expect = 7e-072
Identities = 137/209 (65%), Positives = 163/209 (77%), Gaps = 4/209 (1%)
Frame = +3
Query: 213 GWLLGL----GDNKKKKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKV 380
GWL GL G T V AGDPVLHE A+EV P ++ SE++Q IID M+ V
Sbjct: 49 GWLSGLLGRKGGGGAPMAMTVTLGTVKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAV 108
Query: 381 MRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVS 560
MR APGVGLAAPQIG+PL+IIVLEDT+EYISY KE++ AQ R PFDL+V++NP+LK S
Sbjct: 109 MRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYVSKEDIDAQDRCPFDLLVVINPKLKKTS 168
Query: 561 NKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGN 740
+ A F+ GCLSVDG+RAVVER+L+VEV+G DR G ++V ASGWQARILQHECDHL+G
Sbjct: 169 KRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQARILQHECDHLEGT 228
Query: 741 LYVDKMIPRTFRTVDNLDLPLADGCPKLG 827
LYVDKM+PRTFRTVDNL+LPLA GCP LG
Sbjct: 229 LYVDKMVPRTFRTVDNLNLPLATGCPPLG 257
>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
Length = 305
Score = 270 bits (690), Expect = 5e-070
Identities = 136/208 (65%), Positives = 163/208 (78%), Gaps = 2/208 (0%)
Frame = +3
Query: 210 AGWLLGLGDNKK--KKKQTNLPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVM 383
AG G G K KK+T LP+IV AGDPVLHE A EV +EIGSER+Q+IIDDM+ VM
Sbjct: 96 AGGFFGFGKKKTGFGKKKTVLPEIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVM 155
Query: 384 RLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSN 563
APG GLAAPQ+G+PL+IIVLED +EYI + KEE AQ+R PFDL++++NP+LK
Sbjct: 156 WNAPGCGLAAPQLGVPLQIIVLEDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGI 215
Query: 564 KKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNL 743
K A FF GCLSV+GFR +VER+LEVEVTG+ R G I++NA+GW+ARILQHECDHL G L
Sbjct: 216 KTAKFFEGCLSVNGFRGLVERHLEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLL 275
Query: 744 YVDKMIPRTFRTVDNLDLPLADGCPKLG 827
YVDK+IPRTFRTV+N LPLA GCPK G
Sbjct: 276 YVDKLIPRTFRTVENFRLPLATGCPKPG 303
>gi|255629341|gb|ACU15015.1| unknown [Glycine max]
Length = 223
Score = 268 bits (683), Expect = 3e-069
Identities = 131/190 (68%), Positives = 155/190 (81%)
Frame = +3
Query: 264 LPDIVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRII 443
L IV AG+ VLH +A EV+ EI SERVQ+IIDDMV+VMR APGVGLAAPQIGIPLRII
Sbjct: 34 LAKIVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRII 93
Query: 444 VLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVE 623
VLED +Y++Y +E+ AQ R PFDL+V++NP+LK + + ALFF GCLSV G+ AVVE
Sbjct: 94 VLEDKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVE 153
Query: 624 RYLEVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPL 803
RYL+VEV G+DR GE I++NA+GWQARILQHECDHLDG LYVDKM+PRTFR +N PL
Sbjct: 154 RYLDVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDKMVPRTFRAPENSYKPL 213
Query: 804 ADGCPKLGPR 833
A GCPKLGPR
Sbjct: 214 AHGCPKLGPR 223
>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica
Group]
Length = 155
Score = 240 bits (612), Expect = 5e-061
Identities = 114/155 (73%), Positives = 134/155 (86%)
Frame = +3
Query: 369 MVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEVLAQQRRPFDLMVMVNPEL 548
MV VMR APGVGLAAPQIG+PL+IIVLEDT+EYISYAPK+++ AQ RRPFDL+V++NP+L
Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60
Query: 549 KGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYDRQGERIQVNASGWQARILQHECDH 728
K S + ALFF GCLSVDG+RA+VER+L+VEV+G DR G I+V ASGWQARILQHECDH
Sbjct: 61 KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120
Query: 729 LDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGPR 833
L+G LYVD M+PRTFR VDNLDLPL GCP +G R
Sbjct: 121 LEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIGAR 155
>gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula]
Length = 241
Score = 225 bits (571), Expect = 3e-056
Identities = 118/195 (60%), Positives = 146/195 (74%), Gaps = 8/195 (4%)
Frame = +3
Query: 117 PVSRPSPSHFLNRSSSSLYKFSSSSSSVKTNAGWLLGLGDNKKKKKQTNLPDIVAAGDPV 296
P S+P P SS SS +++++T AG+ G + KKKK+ +LPD V AGDPV
Sbjct: 35 PFSKPPPLTLTLSSS------SSQNATIRTRAGFFFGRTKDDKKKKKMDLPDTVKAGDPV 88
Query: 297 LHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIVLEDTKEYISY 476
LHE A+EVDP EI S++VQ+IIDDM++VMR APGVGLAAPQIG+ RIIVLEDT+E+ISY
Sbjct: 89 LHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLEDTEEFISY 148
Query: 477 APKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTGYD 656
APKE + AQ R PFDL+V++NP+LK S + ALFF GCLSVDGFRAVVER+L+VEVTG D
Sbjct: 149 APKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLDVEVTGLD 208
Query: 657 RQGERIQVNASGWQA 701
R G+ Q N W A
Sbjct: 209 RNGD--QSNNCFWLA 221
>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla
CCMP1545]
Length = 185
Score = 185 bits (468), Expect = 3e-044
Identities = 98/185 (52%), Positives = 121/185 (65%), Gaps = 1/185 (0%)
Frame = +3
Query: 273 IVAAGDPVLHEKAREVDPEEIGSERVQRIIDDMVKVMRLAPGVGLAAPQIGIPLRIIVLE 452
IV AG P L E A EV I + + Q +I +M+ + R GVGLAAPQIG+P RI VLE
Sbjct: 2 IVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICR-GRGVGLAAPQIGVPYRIFVLE 60
Query: 453 DTKEYISYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVERYL 632
DT+E +S K+++ A R+PF V++NP + VSN A FF GCLSV G+R +V RYL
Sbjct: 61 DTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRYL 120
Query: 633 EVEVTGYDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPLADG 812
EV VTGY G + A GWQARI+QHE DHL+G LYVD+M RTFR VD LD PL
Sbjct: 121 EVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDKLDEPLPPA 180
Query: 813 CPKLG 827
P+ G
Sbjct: 181 HPEFG 185
>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
Length = 121
Score = 184 bits (466), Expect = 4e-044
Identities = 85/121 (70%), Positives = 102/121 (84%)
Frame = +3
Query: 471 SYAPKEEVLAQQRRPFDLMVMVNPELKGVSNKKALFF*GCLSVDGFRAVVERYLEVEVTG 650
SYAPK+++ AQ RRPFDL+V++NP+LK S + ALFF GCLSVDG+RA+VER+L+VEV+G
Sbjct: 1 SYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSG 60
Query: 651 YDRQGERIQVNASGWQARILQHECDHLDGNLYVDKMIPRTFRTVDNLDLPLADGCPKLGP 830
DR G I+V ASGWQARILQHECDHL+G LYVD M+PRTFR VDNLDLPL GCP +G
Sbjct: 61 LDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIGA 120
Query: 831 R 833
R
Sbjct: 121 R 121
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,848,489,672
Number of Sequences: 15229318
Number of Extensions: 359848489672
Number of Successful Extensions: 91916522
Number of sequences better than 0.0: 0
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