BLASTX 7.6.2
Query= UN03357 /QuerySize=593
(592 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bo... 180 8e-045
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Ho... 180 8e-045
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mu... 180 8e-045
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm... 178 4e-044
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm... 166 1e-040
sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm... 160 6e-039
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm... 134 4e-031
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Sa... 109 2e-023
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragme... 52 2e-006
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protei... 50 9e-006
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus
GN=SNRPD2 PE=3 SV=1
Length = 118
Score = 180 bits (455), Expect = 8e-045
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = +1
Query: 94 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 267
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 268 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens
GN=SNRPD2 PE=1 SV=1
Length = 118
Score = 180 bits (455), Expect = 8e-045
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = +1
Query: 94 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 267
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 268 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus
GN=Snrpd2 PE=2 SV=1
Length = 118
Score = 180 bits (455), Expect = 8e-045
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = +1
Query: 94 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 267
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 268 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1
Length = 119
Score = 178 bits (449), Expect = 4e-044
Identities = 86/108 (79%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Frame = +1
Query: 100 RPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 273
+P E T + + EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNM
Sbjct: 5 KPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 64
Query: 274 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
VLENV+EMWTE+P+TGKGKKK PVN+DRFISKMFLRGDSVI+VLRNP
Sbjct: 65 VLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 166 bits (418), Expect = 1e-040
Identities = 81/109 (74%), Positives = 93/109 (85%), Gaps = 2/109 (1%)
Frame = +1
Query: 97 SRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCN 270
++P E T + E+EEFN GPLS+L SVKNN QVLINCRNN+KLLGRV+AFDRHCN
Sbjct: 5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCN 64
Query: 271 MVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
MVLENV+EMWTEVPKTGKGKKKA V +DRFISKMFLRGDSVI+V++NP
Sbjct: 65 MVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2
OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 160 bits (404), Expect = 6e-039
Identities = 77/104 (74%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Frame = +1
Query: 106 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 285
M ++T + K ++ + GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 4 MNDETMEDKPDD---SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 286 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
V+E+WTEVPKT KGKKKA P+N+DRFISKMFLRGDSVI+VL+NP
Sbjct: 61 VKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1
Length = 115
Score = 134 bits (337), Expect = 4e-031
Identities = 65/96 (67%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Frame = +1
Query: 130 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 309
+ EE EF+ GPLSVL +VKN+ QVLINCRNN+KLL RV+AFDRH NMVLENV+EMWTE
Sbjct: 19 RLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEK 78
Query: 310 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
+T G KK +N+DRFISKMFLRGD V++V+R P
Sbjct: 79 KRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces
cerevisiae GN=SMD2 PE=1 SV=2
Length = 110
Score = 109 bits (271), Expect = 2e-023
Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 7/94 (7%)
Frame = +1
Query: 136 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 315
EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 316 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 417
KK +NR+RFISK+FLRGDSVI+VL+ P
Sbjct: 79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus
scrofa GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 52 bits (124), Expect = 2e-006
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +1
Query: 94 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNR 228
+++P E T + K EEEEFNTGPLSV S K TQVLINCRN +
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2
Length = 93
Score = 50 bits (118), Expect = 9e-006
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +1
Query: 160 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339
PL ++ +S+ + V + R +R+L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 340 LPVNRDRFISKMFLRGDSVIIV 405
L R + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,059,387,112
Number of Sequences: 518415
Number of Extensions: 13059387112
Number of Successful Extensions: 88696377
Number of sequences better than 0.0: 0
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