BLASTX 7.6.2
Query= UN04022 /QuerySize=1499
(1498 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba] 805 5e-231
gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT... 740 1e-211
gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arab... 732 4e-209
gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigm... 726 3e-207
gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana] 726 4e-207
gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIG... 580 3e-163
gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vini... 580 3e-163
gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpo... 573 3e-161
gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea] 565 8e-159
gi|224126061|ref|XP_002319746.1| predicted protein [Populus tric... 542 8e-152
gi|224144900|ref|XP_002325455.1| predicted protein [Populus tric... 527 3e-147
gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sa... 394 2e-107
gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japo... 394 2e-107
gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryz... 393 6e-107
gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativ... 392 1e-106
gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays] 389 6e-106
gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare ... 376 6e-102
gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japo... 368 2e-099
gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT... 364 4e-098
gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis] 353 7e-095
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 805 bits (2078), Expect = 5e-231
Identities = 418/454 (92%), Positives = 431/454 (94%), Gaps = 9/454 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAP-KCNK 1320
TLF N+HN+KLSVSS DKRSKWDQFTEKERAGILGHLAVSD GVVSDR TAP +CNK
Sbjct: 129 TLFGNSHNTKLSVSSAADKRSKWDQFTEKERAGILGHLAVSDTGVVSDRITAPGSLECNK 188
Query: 1319 ESSDDLTPEKQDVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQ-SVKTG 1143
E+SDDLT P E++E E LSV+SAVRSTRQTERKARRVKGLEKTASGMQ SVKTG
Sbjct: 189 EASDDLT-------PAEKQEVEKLSVSSAVRSTRQTERKARRVKGLEKTASGMQSSVKTG 241
Query: 1142 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTER 963
SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTER
Sbjct: 242 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTER 301
Query: 962 CGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDL 783
CGHQPTFSQWASAAGVD+KTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDL
Sbjct: 302 CGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDL 361
Query: 782 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 603
VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK
Sbjct: 362 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 421
Query: 602 EARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 423
EARKQLYSETG QPKNEEVAEATGLSMKRLMAVLL+PKPPRSLDQKIGINLNLKPSEVI+
Sbjct: 422 EARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIA 481
Query: 422 DPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSR 243
DPEAETSEDILMKQFMRQDLDKVLD L TR+KQVIRW FGMEDGRMKTLQEIGETMGVSR
Sbjct: 482 DPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSR 541
Query: 242 ERVRQIESSAFRKLKNKKRNSHLQQYLVAQTKES 141
ERVRQI++SAFRKLKNKKRNSHLQQYLVAQTKES
Sbjct: 542 ERVRQIDTSAFRKLKNKKRNSHLQQYLVAQTKES 575
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915
[Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 740 bits (1910), Expect = 1e-211
Identities = 382/450 (84%), Positives = 411/450 (91%), Gaps = 7/450 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAPKCNKE 1317
TLFKN++N+ L +SST DKRSKWDQFTEKERAGILGHLAVSD G+VSD+ TAPA NKE
Sbjct: 129 TLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITAPA--SNKE 186
Query: 1316 SSDDLTPEKQ-DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
S DL EKQ +VE LEE+ SV+ AVRSTRQTERKARR KGLEKTASG+ SVKTGS
Sbjct: 187 SPGDLESEKQEEVELLEEQP----SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGS 242
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERC 960
+ RKKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE +LS GIQDLLKLERLQ ELTERC
Sbjct: 243 NPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERC 302
Query: 959 GHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLV 780
G QPTF+QWASAAGVDQK+LRKRI HGT CKD+MIKSNIRLVISIAKNYQGAGM+ QDLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362
Query: 779 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 600
QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422
Query: 599 ARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISD 420
ARKQLYSETG PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEVI+D
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIAD 482
Query: 419 PEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRE 240
PEA TSEDIL+K+FMRQDLDKVLD LGTR+KQVIRW FGMEDGRMKTLQEIGE MGVSRE
Sbjct: 483 PEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRE 542
Query: 239 RVRQIESSAFRKLKNKKRNSHLQQYLVAQT 150
RVRQIESSAFRKLKNKKR++HLQQYLVAQ+
Sbjct: 543 RVRQIESSAFRKLKNKKRSNHLQQYLVAQS 572
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis
thaliana]
Length = 572
Score = 732 bits (1889), Expect = 4e-209
Identities = 380/450 (84%), Positives = 408/450 (90%), Gaps = 7/450 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAPKCNKE 1317
TLFKN++N+ L SST DKRSKWDQFTEKERAGILGHLAVSD G+VSD+ TA A NKE
Sbjct: 129 TLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASA--SNKE 186
Query: 1316 SSDDLTPEKQ-DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
S DL EKQ +VE LEE+ SV+ AVRSTRQTERKARR KGLEKTASG+ SVKTGS
Sbjct: 187 SIGDLESEKQEEVELLEEQP----SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGS 242
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERC 960
S +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE +LS GIQDLLKLERLQ ELTER
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERS 302
Query: 959 GHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLV 780
G QPTF+QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGM+ QDLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362
Query: 779 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 600
QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422
Query: 599 ARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISD 420
ARKQLYSETG PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEVI+D
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIAD 482
Query: 419 PEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRE 240
PEA TSEDIL+K+FMRQDLDKVLD LGTR+KQVIRW FGMEDGRMKTLQEIGE MGVSRE
Sbjct: 483 PEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRE 542
Query: 239 RVRQIESSAFRKLKNKKRNSHLQQYLVAQT 150
RVRQIESSAFRKLKNKKRN+HLQQYLVAQ+
Sbjct: 543 RVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1
[Arabidopsis thaliana]
Length = 572
Score = 726 bits (1873), Expect = 3e-207
Identities = 378/450 (84%), Positives = 405/450 (90%), Gaps = 7/450 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAPKCNKE 1317
TLFKN++ + L SST DKRSKWDQFTEKERAGILGHLAVSD G+VSD+ TA A NKE
Sbjct: 129 TLFKNSNYTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASA--SNKE 186
Query: 1316 SSDDLTPEKQ-DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
S DL EKQ +VE LEE+ SV AVRSTRQTERKARR KGLEKTASG+ SVKTGS
Sbjct: 187 SIGDLESEKQEEVELLEEQP----SVGLAVRSTRQTERKARRAKGLEKTASGIPSVKTGS 242
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERC 960
S +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE +LS GIQDLLKLERLQ ELTER
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERS 302
Query: 959 GHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLV 780
G QPTF+QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGM+ QDLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362
Query: 779 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 600
QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422
Query: 599 ARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISD 420
ARKQLYSETG PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEVI+D
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIAD 482
Query: 419 PEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRE 240
PEA T EDIL+K+FMRQDLDKVLD LGTR+KQVIRW FGMEDGRMKTLQEIGE MGVSRE
Sbjct: 483 PEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRE 542
Query: 239 RVRQIESSAFRKLKNKKRNSHLQQYLVAQT 150
RVRQIESSAFRKLKNKKRN+HLQQYLVAQ+
Sbjct: 543 RVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 726 bits (1872), Expect = 4e-207
Identities = 379/452 (83%), Positives = 408/452 (90%), Gaps = 9/452 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAPKCNKE 1317
TLFKN++N+ L SST DKRSKWDQFTEKERAGILGHLAVSD G+VSD+ TA A NKE
Sbjct: 129 TLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASA--SNKE 186
Query: 1316 SSDDLTPEKQ-DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
S DL EKQ +VE LEE+ SV+ AVRSTRQTERKARR KGLEKTASG+ SVKTGS
Sbjct: 187 SIGDLESEKQEEVELLEEQP----SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGS 242
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSS--KLLTAREEQQLSEGIQDLLKLERLQAELTE 966
S +KKR+ +QE+DHNDPLRYLRMTTSSS KLLT REE +LS GIQDLLKLERLQ ELTE
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTE 302
Query: 965 RCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQD 786
R G QPTF+QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGM+ QD
Sbjct: 303 RSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQD 362
Query: 785 LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRV 606
LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRV
Sbjct: 363 LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRV 422
Query: 605 KEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVI 426
KEARKQLYSETG PKNEE+AEATGLSMKRLMAVLL+PKPPRSLD+KIG+N NLKPSEVI
Sbjct: 423 KEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVI 482
Query: 425 SDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVS 246
+DPEA TSEDIL+K+FMRQDLDKVLD LGTR+KQVIRW FGMEDGRMKTLQEIGE MGVS
Sbjct: 483 ADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVS 542
Query: 245 RERVRQIESSAFRKLKNKKRNSHLQQYLVAQT 150
RERVRQIESSAFRKLKNKKRN+HLQQYLVAQ+
Sbjct: 543 RERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 574
>gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIGMA FACTOR B);
DNA binding / DNA-directed RNA polymerase/ transcription factor [Vitis
vinifera]
Length = 578
Score = 580 bits (1493), Expect = 3e-163
Identities = 295/407 (72%), Positives = 343/407 (84%), Gaps = 3/407 (0%)
Frame = -3
Query: 1367 GVVSDRATAPAPKCNKESSDDLTPEKQDVEPLEEEEEEL---LSVTSAVRSTRQTERKAR 1197
G++ D A + S D+T + D+EP EE E L S + VRS RQ ERKAR
Sbjct: 172 GILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKAR 231
Query: 1196 RVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSE 1017
R + EK ++G+ SV++GS+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA EE +LSE
Sbjct: 232 RARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSE 291
Query: 1016 GIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRL 837
GIQDLLKLE+LQ +L ER G +PTF+QWA+AAGVDQKTLR+R +G +CKD+MIKSNIRL
Sbjct: 292 GIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRL 351
Query: 836 VISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 657
VISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 352 VISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 411
Query: 656 SRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRS 477
SR IRLPFHMVEATYRVKEARKQLYSE G P NEEVAEATGLSMKRL AVLL PK PRS
Sbjct: 412 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRS 471
Query: 476 LDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGME 297
LDQKIGIN NLKPSEVI+DP+AET+E++L+KQFMR+DL+KVL+ L R+KQVIRW +G+E
Sbjct: 472 LDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLE 531
Query: 296 DGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLVA 156
DGR KTLQEIGE MGVSRER+RQIES AFRKLKNK+R HLQQYLV+
Sbjct: 532 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 580 bits (1493), Expect = 3e-163
Identities = 295/407 (72%), Positives = 343/407 (84%), Gaps = 3/407 (0%)
Frame = -3
Query: 1367 GVVSDRATAPAPKCNKESSDDLTPEKQDVEPLEEEEEEL---LSVTSAVRSTRQTERKAR 1197
G++ D A + S D+T + D+EP EE E L S + VRS RQ ERKAR
Sbjct: 169 GILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKAR 228
Query: 1196 RVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSE 1017
R + EK ++G+ SV++GS+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA EE +LSE
Sbjct: 229 RARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSE 288
Query: 1016 GIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRL 837
GIQDLLKLE+LQ +L ER G +PTF+QWA+AAGVDQKTLR+R +G +CKD+MIKSNIRL
Sbjct: 289 GIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRL 348
Query: 836 VISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 657
VISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 349 VISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 408
Query: 656 SRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRS 477
SR IRLPFHMVEATYRVKEARKQLYSE G P NEEVAEATGLSMKRL AVLL PK PRS
Sbjct: 409 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRS 468
Query: 476 LDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGME 297
LDQKIGIN NLKPSEVI+DP+AET+E++L+KQFMR+DL+KVL+ L R+KQVIRW +G+E
Sbjct: 469 LDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLE 528
Query: 296 DGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLVA 156
DGR KTLQEIGE MGVSRER+RQIES AFRKLKNK+R HLQQYLV+
Sbjct: 529 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative
[Ricinus communis]
Length = 569
Score = 573 bits (1476), Expect = 3e-161
Identities = 301/410 (73%), Positives = 344/410 (83%), Gaps = 7/410 (1%)
Frame = -3
Query: 1370 AGVVSDR-ATAPAPKCNKESSDDLTPEKQDVEPLEEEEEEL----LSVTSAVRSTRQTER 1206
A ++ D AT P+ +ESS + ++ D L +E EL LS AVRS RQTER
Sbjct: 162 ARIIGDSVATETGPR--EESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTER 219
Query: 1205 KARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQ 1026
KARR + +EK AS + SVK GS+S+KKR + QE+D++DPLRYLR TTS+S+LLTA EE +
Sbjct: 220 KARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELE 279
Query: 1025 LSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSN 846
LS IQDLLKLERLQ EL ER G QPTF+QWA+AAGVDQ+TLRKRI HGT CKD+MIKSN
Sbjct: 280 LSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSN 339
Query: 845 IRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSL 666
IRLVISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSL
Sbjct: 340 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 399
Query: 665 SDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKP 486
SDQSR IRLPFHMVEATYRVKEARKQLYSE G P +EEVAEA GLSMKRL AVLL PK
Sbjct: 400 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKA 459
Query: 485 PRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSF 306
PRSLDQKIG+N++LKPSEVI+DPEAET+E++LMKQFM+QDL+KVL+ L R+ QV+RW F
Sbjct: 460 PRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRF 519
Query: 305 GMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLVA 156
G+EDGRMKTLQEIGE MGVSRER+RQIESSAFRKLKNKKR L+QYL+A
Sbjct: 520 GLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 565 bits (1455), Expect = 8e-159
Identities = 288/391 (73%), Positives = 328/391 (83%), Gaps = 3/391 (0%)
Frame = -3
Query: 1325 NKESSDDLTPEKQDVEPLEEEEEEL---LSVTSAVRSTRQTERKARRVKGLEKTASGMQS 1155
N D E D+EP EE + L L + VRSTRQ ERKARR + EK AS + S
Sbjct: 183 NSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARAAEKVASNVVS 242
Query: 1154 VKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAE 975
VK GS+SRKKR + QE+D++DPLRYLR T+SS+LLT+ EE +LS GIQDLLKLE+L E
Sbjct: 243 VKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDE 302
Query: 974 LTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMD 795
L R G P+F QWA+AAG+DQ+TLR+R+ HGT CKD+MIKSN+RLVISIAKNYQG+GM+
Sbjct: 303 LKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMN 362
Query: 794 FQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 615
QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEAT
Sbjct: 363 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 422
Query: 614 YRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPS 435
YRVKEARKQL SE G QP NEEVAEATGLSMKRL AVL+ PK PRSLDQKIG N+NLKPS
Sbjct: 423 YRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPS 482
Query: 434 EVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETM 255
EVI+DPEAET+ED+L KQFMRQDL+KVLD L +R+KQVIRW FG+EDGRMKTLQEIGE M
Sbjct: 483 EVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELM 542
Query: 254 GVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
GVSRER+RQIESSAFRKL+NKK+ +LQQY+
Sbjct: 543 GVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 542 bits (1395), Expect = 8e-152
Identities = 280/408 (68%), Positives = 330/408 (80%), Gaps = 3/408 (0%)
Frame = -3
Query: 1370 AGVVSDRATAPAPKCNKESSDDLTPEKQDVEPLEEE---EEELLSVTSAVRSTRQTERKA 1200
A ++ D +A + S T E +EP +EE ++ LS AVRS RQTERKA
Sbjct: 160 ADIIGDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKA 219
Query: 1199 RRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLS 1020
RR + EK A+ + SVK+GS+S+KKRV QE+D +DPLR+ R +SSS+LL+A EE +LS
Sbjct: 220 RRARAAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELS 279
Query: 1019 EGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIR 840
EGIQDLLKLER++ EL ER G +P+F+QWA+AAGVDQ TLRKR+ +G CKD+MIKSN+R
Sbjct: 280 EGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVR 339
Query: 839 LVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSD 660
LVISIAKNYQG GM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 340 LVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 399
Query: 659 QSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPR 480
+SR IRLPFHMV+ATYRVKEARKQLYSE G P ++EVAEA GLSMKRL AVLL PK PR
Sbjct: 400 RSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPR 459
Query: 479 SLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGM 300
SLDQK+G N++LK SEV +DPEAET+ED+LMK+FM++DL KVL L R+ QV+RW FGM
Sbjct: 460 SLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGM 519
Query: 299 EDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLVA 156
EDGRMKTLQEIGE MGVSRERVRQIE SAFRKLKNK R L+QY+VA
Sbjct: 520 EDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 527 bits (1356), Expect = 3e-147
Identities = 267/388 (68%), Positives = 320/388 (82%), Gaps = 4/388 (1%)
Frame = -3
Query: 1319 ESSDDLTPEKQDVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
E SD P +++ LE++ LS + VRS RQT+RKA+R + EK A+ +K+GS
Sbjct: 181 EESDCFGPTHEELALLEKQ----LSESIVVRSKRQTQRKAKRARAAEKAAANFVFMKSGS 236
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERC 960
+ +KKRV QE+D +DPLR+ R ++SS+LL+A EE +LSEGIQDLLKLER++ EL ER
Sbjct: 237 ACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERF 296
Query: 959 GHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLV 780
G +PTF+QWA+AA VDQ TLRKR+ + CKD+MIKSNIRLVISIAKNYQGAGM+ QDLV
Sbjct: 297 GGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 356
Query: 779 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 600
QEGCRGLVRG EKFDA+KGFKFSTYAHWWI+QAVR+SLSDQSR IRLPFHMV+ATYRVKE
Sbjct: 357 QEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKE 416
Query: 599 ARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISD 420
ARKQ YSE G P ++EVAEATGLSMKRL AVLL PK PRSLDQK+G N++LK SEV +D
Sbjct: 417 ARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTAD 476
Query: 419 PEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRE 240
PEAET+ED+LMK+FM++DL++VL+ L R+ QVIRW FGMEDGRMKTLQEIGE MGVSRE
Sbjct: 477 PEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRE 536
Query: 239 RVRQIESSAFRKLKNKKRNSHLQQYLVA 156
R+RQIE SAFRKLKNK R L+QYLV+
Sbjct: 537 RIRQIELSAFRKLKNKNRTKQLRQYLVS 564
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica
Group]
Length = 563
Score = 394 bits (1012), Expect = 2e-107
Identities = 214/402 (53%), Positives = 288/402 (71%), Gaps = 9/402 (2%)
Frame = -3
Query: 1346 TAPAPKCNKESSDDLTPEKQDVEPLEEEEEELLSVTS-----AVRSTRQTERKARRVKGL 1182
T P + SD + E+ + + +E EL T AV+S RQTER+ARR +
Sbjct: 161 TEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVKSARQTERRARRTRAA 220
Query: 1181 EKTASGMQ-SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQD 1005
K A+ ++ S K +SS+KKR N +MT +LLTA+EE + SEGIQD
Sbjct: 221 IKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMT--GRRLLTAKEEVEFSEGIQD 278
Query: 1004 LLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISI 825
LLKLE +QAEL E G QPTF+QWA+AAGVD++TLRKR+ HG CK+RM+ SN+RLVISI
Sbjct: 279 LLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISI 338
Query: 824 AKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 645
A+ ++G GM+ DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWWIKQA+RKS+S+QS++
Sbjct: 339 AREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIF 398
Query: 644 RLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQK 465
RLP HMVEA+YRVKE K+L + +P NEE+A TG+ +KR+ A + PK SLD K
Sbjct: 399 RLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSK 458
Query: 464 IGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRM 285
IG + ++ EV +DP AET+E++L + M++D+ K LD L TR++QV+ FG+EDGR+
Sbjct: 459 IG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRI 517
Query: 284 KTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLV 159
+TLQEIG TMGVSRER+RQIES+AFRKL++KKR + L+ YLV
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 394 bits (1012), Expect = 2e-107
Identities = 214/402 (53%), Positives = 288/402 (71%), Gaps = 9/402 (2%)
Frame = -3
Query: 1346 TAPAPKCNKESSDDLTPEKQDVEPLEEEEEELLSVTS-----AVRSTRQTERKARRVKGL 1182
T P + SD + E+ + + +E EL T AV+S RQTER+ARR +
Sbjct: 161 TEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVKSARQTERRARRTRAA 220
Query: 1181 EKTASGMQ-SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQD 1005
K A+ ++ S K +SS+KKR N +MT +LLTA+EE + SEGIQD
Sbjct: 221 IKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMT--GRRLLTAKEEVEFSEGIQD 278
Query: 1004 LLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISI 825
LLKLE +QAEL E G QPTF+QWA+AAGVD++TLRKR+ HG CK+RM+ SN+RLVISI
Sbjct: 279 LLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISI 338
Query: 824 AKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 645
A+ ++G GM+ DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWWIKQA+RKS+S+QS++
Sbjct: 339 AREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIF 398
Query: 644 RLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQK 465
RLP HMVEA+YRVKE K+L + +P NEE+A TG+ +KR+ A + PK SLD K
Sbjct: 399 RLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSK 458
Query: 464 IGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRM 285
IG + ++ EV +DP AET+E++L + M++D+ K LD L TR++QV+ FG+EDGR+
Sbjct: 459 IG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRI 517
Query: 284 KTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLV 159
+TLQEIG TMGVSRER+RQIES+AFRKL++KKR + L+ YLV
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica
Group]
Length = 563
Score = 393 bits (1008), Expect = 6e-107
Identities = 207/373 (55%), Positives = 281/373 (75%), Gaps = 6/373 (1%)
Frame = -3
Query: 1274 LEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQ-SVKTGSSSRKKRVASQEIDH 1098
L+ + +++ S+ AV+S RQTER+ARR + K A+ ++ S K +SS+KKR
Sbjct: 191 LDGDTQDIPSI--AVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGT 248
Query: 1097 NDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAG 918
N +MT +LLTA+EE + SEGIQDLLKLE +QAEL E G QPTF+QWA+AAG
Sbjct: 249 NPLGSLWKMT--GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAG 306
Query: 917 VDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKF 738
VD++TLRKR+ HG CK+RM+ SN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKF
Sbjct: 307 VDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKF 366
Query: 737 DATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPK 558
DA+KGF+FSTY+HWWIKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + +P
Sbjct: 367 DASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPT 426
Query: 557 NEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQF 378
NEE+A TG+ +KR+ A + PK SLD KIG + ++ EV +DP AET+E++L +
Sbjct: 427 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLS 485
Query: 377 MRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLK 198
M++D+ K LD L TR++QV+ FG+EDGR++TLQEIG TMGVSRER+RQIES+AFRKL+
Sbjct: 486 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 545
Query: 197 NKKRNSHLQQYLV 159
+KKR + L+ YLV
Sbjct: 546 SKKRVNALKDYLV 558
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica
Group]
Length = 564
Score = 392 bits (1005), Expect = 1e-106
Identities = 213/402 (52%), Positives = 287/402 (71%), Gaps = 9/402 (2%)
Frame = -3
Query: 1346 TAPAPKCNKESSDDLTPEKQDVEPLEEEEEELLSVTS-----AVRSTRQTERKARRVKGL 1182
T P + SD + E+ + + +E EL T AV+S RQTE +ARR +
Sbjct: 161 TEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVKSARQTEGRARRTRAA 220
Query: 1181 EKTASGMQ-SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQD 1005
K A+ ++ S K +SS+KKR N +MT +LLTA+EE + SEGIQD
Sbjct: 221 IKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMT--GRRLLTAKEEVEFSEGIQD 278
Query: 1004 LLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISI 825
LLKLE +QAEL E G QPTF+QWA+AAGVD++TLRKR+ HG CK+RM+ SN+RLVISI
Sbjct: 279 LLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISI 338
Query: 824 AKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 645
A+ ++G GM+ DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWWIKQA+RKS+S+QS++
Sbjct: 339 AREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIF 398
Query: 644 RLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQK 465
RLP HMVEA+YRVKE K+L + +P NEE+A TG+ +KR+ A + PK SLD K
Sbjct: 399 RLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSK 458
Query: 464 IGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRM 285
IG + ++ EV +DP AET+E++L + M++D+ K LD L TR++QV+ FG+EDGR+
Sbjct: 459 IG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRI 517
Query: 284 KTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLV 159
+TLQEIG TMGVSRER+RQIES+AFRKL++KKR + L+ YLV
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 389 bits (999), Expect = 6e-106
Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 4/360 (1%)
Frame = -3
Query: 1235 AVRSTRQTERKARRVKGLEKTASGMQ-SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSS 1059
AV+S RQ+ERKARR + K ++ + S K SS+KKR N +MT
Sbjct: 178 AVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLWKMT--G 235
Query: 1058 SKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHG 879
+LLTA+EE + SEGIQDLLKLE +QAEL E G QPTFSQWA+AAGVD+KTLRKR+ +G
Sbjct: 236 RRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYG 295
Query: 878 TQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 699
CK+RM+ SN+RLVISIA+ ++G GMDF DL+QEG +GL+RGAEKFD++KGF+FSTY+H
Sbjct: 296 IYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYSH 355
Query: 698 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMK 519
WWIKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + +P NEE+A TG+ +K
Sbjct: 356 WWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPIK 415
Query: 518 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLG 339
R+ A + PK SLD KIG + ++ EV +DP AET+E++L + M++D+ LD L
Sbjct: 416 RVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLT 474
Query: 338 TRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYLV 159
TR+KQV+ FG+EDGR++TLQEIG MGVSRER+RQIES AFRKL++KK+ L+ YLV
Sbjct: 475 TREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 552
Score = 376 bits (965), Expect = 6e-102
Identities = 199/377 (52%), Positives = 275/377 (72%), Gaps = 7/377 (1%)
Frame = -3
Query: 1286 DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQ-SVKTGSSSRKKRVASQ 1110
D L++++++ ++ AV+S RQ+ER+ARR + K A ++ S+K +SS+KKR S+
Sbjct: 177 DEAELDDDKQDAENI--AVKSARQSERRARRTRATMKAAITVRGSLKLVTSSKKKR--SK 232
Query: 1109 EIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWA 930
+PL L T KLLTA+EE +LS GIQDLLKLE +Q EL E G QPTF QWA
Sbjct: 233 GPSTMNPLGSLWKMT-GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWA 291
Query: 929 SAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRG 750
+AAG D+ TLRKR+ HG CK+RM+ SN+RLVISIA+ ++G G++ DL+QEG +GL+RG
Sbjct: 292 AAAGTDENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRG 351
Query: 749 AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETG 570
AEKFDA+KGF+FSTY+HWWIKQA+RKS+S+Q+++ RLP HMVEA+YRVKE K+L +
Sbjct: 352 AEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLK 411
Query: 569 MQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDIL 390
+P NEE+A G+ +KR+ A + PK SLD KIG + ++ EV +DP AET+E++L
Sbjct: 412 RRPSNEEIAVDIGMPVKRVEAAVSLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEML 470
Query: 389 MKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAF 210
+ M++D+ + LD L R++QV++ FG+ DGR++TLQEIG MGVSRER+RQIES AF
Sbjct: 471 NRMSMKKDVHQALDTLSPRERQVVKLRFGINDGRIRTLQEIGNIMGVSRERIRQIESGAF 530
Query: 209 RKLKNKKRNSHLQQYLV 159
RKL+ KK+ L YLV
Sbjct: 531 RKLRGKKKVKCLMDYLV 547
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
Length = 540
Score = 368 bits (943), Expect = 2e-099
Identities = 192/374 (51%), Positives = 264/374 (70%), Gaps = 11/374 (2%)
Frame = -3
Query: 1271 EEEEEELLSVTSAVRSTRQTERKARRVKGLEKTA---SGMQSVKTGSSSRKKRVASQEID 1101
E +++E AV+S RQ+ER+ARRV+ K A SG V SS+RKKR+
Sbjct: 168 EVDDDEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKG---- 223
Query: 1100 HNDPLR-YLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASA 924
PL + +MT +LLTA++E + S+GIQDLLKLE +Q EL G +PTFSQWA A
Sbjct: 224 CRSPLGCFYKMT--GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEA 281
Query: 923 AGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAE 744
AG D+ TLRKR+ +G CK+ M+KSN+RLVISIA+ ++G GM+F DL+QEG +GLVRGAE
Sbjct: 282 AGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAE 341
Query: 743 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQ 564
KFDA+KGF+FSTY+HWWIKQA+RKS+ +Q+++IRLP HM EA+ RVKE R++L +
Sbjct: 342 KFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRL 401
Query: 563 PKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMK 384
P NEE+A TG+ ++R+ A + PK SL K+G ++ E+ D ET+E++L +
Sbjct: 402 PTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHR 460
Query: 383 QFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRK 204
M++D+D+ LD L R++QVIR+ FGM+DGR++TL +IG MGVSRER+RQIE AFRK
Sbjct: 461 WLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRK 520
Query: 203 LKNKKRNSHLQQYL 162
L+ +K+ LQ YL
Sbjct: 521 LRGRKKVQSLQHYL 534
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810
[Sorghum bicolor]
Length = 528
Score = 364 bits (932), Expect = 4e-098
Identities = 193/390 (49%), Positives = 273/390 (70%), Gaps = 14/390 (3%)
Frame = -3
Query: 1322 KESSDDLTPEKQDVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKT- 1146
+E S + E +D +++++ S+ AV+S R+TERKARRV+ K A S
Sbjct: 144 EEFSSIFSDESED----DDDDDSGHSIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAV 199
Query: 1145 -GSSSRKKRVASQEIDHNDPLR-YLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAEL 972
SS+RKKR+ + PL + +MT +LLTA +E + SEGIQDLLKLE +Q E+
Sbjct: 200 GASSTRKKRLKGCQ----TPLGCFYKMT--GPRLLTAEQEVEFSEGIQDLLKLEAIQKEV 253
Query: 971 TERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDF 792
+ G +PTFSQWA+AAG D+ TLR+R+ HG CK+RM+KSN+RLVISIAK ++G GM+F
Sbjct: 254 AQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEF 313
Query: 791 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 612
DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWWIKQA+RKS+ +Q+++IRLP HM EA+
Sbjct: 314 SDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASS 373
Query: 611 RVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSE 432
RVKE ++L E P NEE+A TG++++R+ A + PK S K+G ++ E
Sbjct: 374 RVKECCRRLRRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQE 432
Query: 431 VISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMG 252
++ D AET+E++L + M++D++ L+ L R+K V+R+ FG+E GR +TL +IG+ MG
Sbjct: 433 IMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMG 492
Query: 251 VSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
VSRER+RQIE AFRKL++KKR LQ YL
Sbjct: 493 VSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 353 bits (904), Expect = 7e-095
Identities = 186/400 (46%), Positives = 263/400 (65%), Gaps = 8/400 (2%)
Frame = -3
Query: 1358 SDRATAPAPKCNKESSDDLTPEKQDVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLE 1179
S +++ P +E + V PL++ + RS+RQ ER+ARR + E
Sbjct: 198 SPSSSSSTPALGRECNISEHAANSLVSPLQK------TYNITARSSRQMERRARRARASE 251
Query: 1178 KTASGMQSVKTGSSSRKKRVASQEIDH-NDPLRYLRMTTSSSKLLTAREEQQLSEGIQDL 1002
K AS ++ SSRK + A H +D +R LR SSS+LLTA EE +LS GIQDL
Sbjct: 252 KAASVASAISPTRSSRKGKKAISSKGHISDSIRLLR-DWSSSRLLTASEEVELSRGIQDL 310
Query: 1001 LKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIA 822
+KL+R++A+ E+ G +PT +QWA GVDQKTL+ R+ G D++I N+RLVIS+A
Sbjct: 311 IKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVA 370
Query: 821 KNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR 642
KNYQ G+ QDL+Q G GL+R AEKFD ++GFKFSTYA+WWI+Q++ K+L++QSR IR
Sbjct: 371 KNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIR 430
Query: 641 LPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKI 462
LP H+VE+ R++ A + LY E P EEVAE G+SM RL V + P SLD+ +
Sbjct: 431 LPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCV 490
Query: 461 GINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMK 282
G +++ K SE+++D +E++E I+ K+ ++DLD+VLD L R+KQV+R +G++DGRMK
Sbjct: 491 GKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMK 550
Query: 281 TLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
+L E+GE +SRERVRQIE A RKL+ R HL+ YL
Sbjct: 551 SLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,288,458,330
Number of Sequences: 15229318
Number of Extensions: 475288458330
Number of Successful Extensions: 120006622
Number of sequences better than 0.0: 0
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