BLASTX 7.6.2
Query= UN04022 /QuerySize=1499
(1498 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen... 278 9e-074
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec... 270 3e-071
sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec... 221 1e-056
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot... 210 3e-053
sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobac... 209 6e-053
sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobac... 209 6e-053
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb... 208 8e-053
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri... 207 2e-052
sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB ... 206 3e-052
sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB ... 203 5e-051
sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA ... 198 1e-049
sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptosp... 198 1e-049
sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptosp... 198 1e-049
sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamyd... 195 7e-049
sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Cauloba... 193 5e-048
sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudom... 188 1e-046
sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodoba... 188 1e-046
sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobac... 188 2e-046
sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobi... 188 2e-046
sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Trepone... 186 4e-046
>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain
PCC 7120) GN=rpoD PE=3 SV=1
Length = 390
Score = 278 bits (710), Expect = 9e-074
Identities = 142/332 (42%), Positives = 215/332 (64%), Gaps = 3/332 (0%)
Frame = -3
Query: 1151 KTGSSSRKKRVASQEIDH--NDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQA 978
K+G +++ +R + H D +R +LL A EE +L+ I DLL+LER++
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 977 ELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGM 798
L+E+ P S+WA A + R R+ G + KD+M++SN+RLV+SIAK Y G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 797 DFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA 618
FQDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 617 TYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKP 438
R+K+ K L E G +P EE+A +++++L + + + P SL+ IG + +
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298
Query: 437 SEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGET 258
+ I + + ET ED + K +R+DL+KVLD L R++ V+R +G++DGRMKTL+EIG+
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 357
Query: 257 MGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
V+RER+RQIE+ A RKL++ RNS L++Y+
Sbjct: 358 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus
elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 270 bits (688), Expect = 3e-071
Identities = 136/311 (43%), Positives = 204/311 (65%), Gaps = 1/311 (0%)
Frame = -3
Query: 1094 DPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGV 915
D +R +LL A EE +L+ I DLL LER++ EL E+ P+ ++WA+A
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 914 DQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFD 735
R+R+ G + KD+M++SN+RLV+SIAK Y G+ FQDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 734 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKN 555
KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E R+K+ K L E G +P
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 554 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFM 375
EE+A +++++L + + + P SL+ IG + + + I + + ET ED + K +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327
Query: 374 RQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKN 195
R+DL+ VL L R++ V+R +G++DGRMKTL+EIG+ V+RER+RQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387
Query: 194 KKRNSHLQQYL 162
RNS L++Y+
Sbjct: 388 PNRNSILKEYI 398
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus
elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1
Length = 320
Score = 221 bits (563), Expect = 1e-056
Identities = 110/290 (37%), Positives = 186/290 (64%), Gaps = 1/290 (0%)
Frame = -3
Query: 1055 KLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGT 876
+LLTA EE +Q L+ L Q EL +R GH+P+ +WA+A ++ + L ++I G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 875 QCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 696
+ K +MI++N+RLV+SIAK YQ M+F DL+QEG GL RG EKFD +KG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 695 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKR 516
WI+QA+ ++++ QSR IRLP H+ E ++K+ +++L + G E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 515 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGT 336
+ + + P SLD K+G + + + E++ D ++ S D + ++ +R+DL ++ L
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSPS-DYVEQESLRRDLRNLMAELTP 262
Query: 335 RKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKR 186
+++ VI +G+++G +L ++GE + +SRERVR++E A L+ + R
Sbjct: 263 QQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSR 312
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermotoga maritima
GN=rpoD PE=1 SV=3
Length = 399
Score = 210 bits (533), Expect = 3e-053
Identities = 103/251 (41%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Frame = -3
Query: 911 QKTLRKRITHG-TQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFD 735
++ L +R G + K+++I SN+RLV+SIAK Y G G+ FQDL+QEG GL++ EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200
Query: 734 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKN 555
KG+KFSTYA WWI+QA+ ++++DQ+R IR+P HMVE ++ R++ Y + G +P
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260
Query: 554 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFM 375
EE+A+ G +++ +L A K SL+ IG + + + ++D + + M+ M
Sbjct: 261 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 320
Query: 374 RQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKN 195
R++L+KVL L R+ V+R +G+ DG+ KTL+E+G+ V+RER+RQIE A RKL++
Sbjct: 321 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380
Query: 194 KKRNSHLQQYL 162
R+ +L+ L
Sbjct: 381 PSRSKYLKSLL 391
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobacterium bovis
GN=rpoD PE=3 SV=1
Length = 528
Score = 209 bits (530), Expect = 6e-053
Identities = 101/240 (42%), Positives = 157/240 (65%)
Frame = -3
Query: 881 GTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 702
G + K+ ++++N+RLV+S+AK Y G GM F DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347
Query: 701 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSM 522
WWI+QA+ ++++DQ+R IR+P HMVE ++ +++L + G +P EE+A+ ++
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407
Query: 521 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPL 342
++++ + + P SLDQ IG + + + I D EA + D + ++ L VLD L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467
Query: 341 GTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+ V+R FG+ DG+ +TL EIG+ GV+RER+RQIES KL++ R+ L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobacterium
tuberculosis GN=rpoD PE=3 SV=1
Length = 528
Score = 209 bits (530), Expect = 6e-053
Identities = 101/240 (42%), Positives = 157/240 (65%)
Frame = -3
Query: 881 GTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 702
G + K+ ++++N+RLV+S+AK Y G GM F DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347
Query: 701 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSM 522
WWI+QA+ ++++DQ+R IR+P HMVE ++ +++L + G +P EE+A+ ++
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407
Query: 521 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPL 342
++++ + + P SLDQ IG + + + I D EA + D + ++ L VLD L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467
Query: 341 GTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+ V+R FG+ DG+ +TL EIG+ GV+RER+RQIES KL++ R+ L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Corynebacterium
diphtheriae GN=sigB PE=3 SV=2
Length = 329
Score = 208 bits (529), Expect = 8e-053
Identities = 100/249 (40%), Positives = 155/249 (62%)
Frame = -3
Query: 911 QKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDA 732
++ L+ + G + + ++++N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 731 TKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNE 552
+KGFKFSTYA WWI+QA+ + ++DQSR IRLP H+VE ++ ++++Y + G + NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 551 EVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMR 372
E+AE +G+ ++ +L + P SLD +G + + I D EA +E ++
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 371 QDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNK 192
D+ VLD L R++ VIR +G++DG +TL +IG G+SRERVRQIE KL++
Sbjct: 259 SDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDG 318
Query: 191 KRNSHLQQY 165
R L+ Y
Sbjct: 319 ARAEKLRAY 327
>sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostridium
acetobutylicum GN=rpoD PE=3 SV=1
Length = 378
Score = 207 bits (525), Expect = 2e-052
Identities = 102/248 (41%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Frame = -3
Query: 902 LRKRITHGTQ-CKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATK 726
L +RI +G + + ++ ++N+RLV+SIAK Y G GM F DL+QEG GL++ EKFD K
Sbjct: 130 LAQRIKNGDRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKK 189
Query: 725 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEV 546
GFKFSTYA WWI+QA+ ++++DQ+R IR+P HMVE ++ +QL E G +P+ EE+
Sbjct: 190 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEI 249
Query: 545 AEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQD 366
A+ + + ++ ++ + P SL+ IG + + I D EA D + +++
Sbjct: 250 AKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQ 309
Query: 365 LDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKR 186
L K+L+ L R+++V+R FG++DGR +TL+E+G+ V+RER+RQIE+ A RKL++ R
Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369
Query: 185 NSHLQQYL 162
+ L+ YL
Sbjct: 370 SKKLKDYL 377
>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB OS=Streptomyces
griseus GN=hrdB PE=1 SV=1
Length = 514
Score = 206 bits (524), Expect = 3e-052
Identities = 131/415 (31%), Positives = 216/415 (52%), Gaps = 24/415 (5%)
Frame = -3
Query: 1382 AVSDAGVVSDR-ATAPAPK-------CNKESSDDLTPEKQDVEPLEEEEEELLSVTSAVR 1227
AV A D A APA K K ++ T +K + ++++E+L A
Sbjct: 115 AVESADAADDAVAAAPAKKTAAKKATAKKAAAKKTTAKKTAAKKSGKQDDEILDGDEAAE 174
Query: 1226 STRQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLL 1047
+ + + +G K + + +++ VA DP++ LL
Sbjct: 175 EVKAGKGEEEEGEGENKGFVLSDDDEDDAPAQQVAVAGATA---DPVKDYLKQIGKVPLL 231
Query: 1046 TAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCK 867
A +E +L++ I+ L E A + A ++ L G + K
Sbjct: 232 NAEQEVELAKRIEAGLFAEDKLANADK-------------LAPKLKRELEIIAEDGRRAK 278
Query: 866 DRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 687
+ ++++N+RLV+S+AK Y G GM F DL+QEG GL+R EKFD TKG+KFSTYA WWI+
Sbjct: 279 NHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR 338
Query: 686 QAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMA 507
QA+ ++++DQ+R IR+P HMVE ++ ++Q+ + G +P EE+A+ ++ ++++
Sbjct: 339 QAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIE 398
Query: 506 VLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKK 327
V + P SL +G + + + ++I D EA D + +++ L VLD L R+
Sbjct: 399 VQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREA 458
Query: 326 QVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
V+ FG+ DG+ KTL EIG+ GV+RER+RQIES KL++ R+ L+ YL
Sbjct: 459 GVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 513
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB OS=Streptomyces
coelicolor GN=hrdB PE=3 SV=2
Length = 511
Score = 203 bits (514), Expect = 5e-051
Identities = 99/240 (41%), Positives = 156/240 (65%)
Frame = -3
Query: 881 GTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 702
G + K+ ++++N+RLV+S+AK Y G GM F DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 701 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSM 522
WWI+QA+ ++++DQ+R IR+P HMVE ++ ++Q+ + G +P EE+A+ ++
Sbjct: 331 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 390
Query: 521 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPL 342
++++ V + P SL +G + + + ++I D EA D + +++ L VLD L
Sbjct: 391 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 450
Query: 341 GTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+ V+ FG+ DG+ KTL EIG+ GV+RER+RQIES KL++ R+ L+ YL
Sbjct: 451 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 510
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA OS=Streptomyces
coelicolor GN=hrdA PE=3 SV=2
Length = 396
Score = 198 bits (502), Expect = 1e-049
Identities = 102/247 (41%), Positives = 156/247 (63%)
Frame = -3
Query: 902 LRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKG 723
L + + G K R+I++N+RLV+S+AK Y G G+ DLVQEG GL+R EKFD +G
Sbjct: 149 LDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 208
Query: 722 FKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVA 543
+KFSTYA WWI+QA+ ++L+DQ+R IR+P H+VE RV ++++ E G +P +EVA
Sbjct: 209 YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVA 268
Query: 542 EATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDL 363
L+ +R+ VL + P SL +G ++ ++I D +A + + +RQ L
Sbjct: 269 AHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHL 328
Query: 362 DKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRN 183
+ VL LG R+++V++ +G+ DGR +TL+EIG GV+RER+RQIES KL++
Sbjct: 329 EAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYA 388
Query: 182 SHLQQYL 162
L+ YL
Sbjct: 389 DQLRGYL 395
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1
Length = 585
Score = 198 bits (502), Expect = 1e-049
Identities = 96/239 (40%), Positives = 151/239 (63%)
Frame = -3
Query: 878 TQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 699
+Q K ++K+N+RLV+SIAK Y GM F DL+QEG GL++ +KF+ KG+KFSTYA
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404
Query: 698 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMK 519
WWI+QA+ +++SDQ+R IR+P HM+E +V + E G P NEE+AE G ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464
Query: 518 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLG 339
++ V + P SL+ +G + + + I D E ET + + + + +VL L
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524
Query: 338 TRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+++VIR FG++DG +TL+E+G V+RER+RQIE+ A R+L++ R+ L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptospira interrogans
GN=rpoD PE=3 SV=1
Length = 585
Score = 198 bits (502), Expect = 1e-049
Identities = 96/239 (40%), Positives = 151/239 (63%)
Frame = -3
Query: 878 TQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 699
+Q K ++K+N+RLV+SIAK Y GM F DL+QEG GL++ +KF+ KG+KFSTYA
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404
Query: 698 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMK 519
WWI+QA+ +++SDQ+R IR+P HM+E +V + E G P NEE+AE G ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464
Query: 518 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLG 339
++ V + P SL+ +G + + + I D E ET + + + + +VL L
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524
Query: 338 TRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+++VIR FG++DG +TL+E+G V+RER+RQIE+ A R+L++ R+ L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae
GN=rpoD PE=3 SV=1
Length = 572
Score = 195 bits (495), Expect = 7e-049
Identities = 97/251 (38%), Positives = 154/251 (61%)
Frame = -3
Query: 914 DQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFD 735
D + L++ + + K M++SN+RLVISIAK Y G+ F DL+QEG GL++ EKF+
Sbjct: 303 DVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFE 362
Query: 734 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKN 555
+G+KFSTYA WWI+QAV ++++DQ+R IR+P HM+E +V K+L ETG +P
Sbjct: 363 YRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTP 422
Query: 554 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFM 375
EE+AE GL+ R+ + + P SL ++G + + D E+ + +
Sbjct: 423 EELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSML 482
Query: 374 RQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKN 195
+ + +VL L R++ V+ FG+ DG+ KTL+E+G V+RER+RQIE+ A RK+++
Sbjct: 483 KDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRH 542
Query: 194 KKRNSHLQQYL 162
R+ L+ +L
Sbjct: 543 PIRSKQLRAFL 553
>sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Caulobacter crescentus
GN=rpoD PE=3 SV=1
Length = 652
Score = 193 bits (488), Expect = 5e-048
Identities = 97/249 (38%), Positives = 154/249 (61%)
Frame = -3
Query: 908 KTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDAT 729
+T++K Q K M+++N+RLVISIAK Y G+ F DL+QEG GL++ +KF+
Sbjct: 402 QTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 461
Query: 728 KGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEE 549
+G+KFSTYA WWI+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G +P EE
Sbjct: 462 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE 521
Query: 548 VAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQ 369
+AE + ++++ VL K P SL+ IG + + I D A D ++ +R+
Sbjct: 522 LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRE 581
Query: 368 DLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKK 189
+VL L R+++V+R FG+ TL+E+G+ V+RER+RQIE+ A RKLK+
Sbjct: 582 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 641
Query: 188 RNSHLQQYL 162
R+ L+ +L
Sbjct: 642 RSRKLRSFL 650
>sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudomonas
fluorescens GN=rpoD PE=3 SV=1
Length = 615
Score = 188 bits (476), Expect = 1e-046
Identities = 99/283 (34%), Positives = 170/283 (60%), Gaps = 6/283 (2%)
Frame = -3
Query: 995 LERLQAELTERCGHQPTFSQWASAAGVDQ-KTLRKRITHG----TQCKDRMIKSNIRLVI 831
+ RLQ ++ RC + T + + + + K + +R++ G + K M+++N+RLVI
Sbjct: 332 IARLQPDII-RCQQKLTALEVETGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVI 390
Query: 830 SIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 651
SIAK Y G+ F DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R
Sbjct: 391 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 450
Query: 650 MIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLD 471
IR+P HM+E ++ +Q+ E G +P EE+ E + ++ VL K P S++
Sbjct: 451 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISME 510
Query: 470 QKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDG 291
IG + + + I D ++ D+ + +++ +VL L R+ +V+R FG++
Sbjct: 511 TPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMN 570
Query: 290 RMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
TL+E+G+ V+RER+RQIE+ A RKL++ R+ HL+ +L
Sbjct: 571 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFL 613
>sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus
GN=rpoD PE=2 SV=1
Length = 674
Score = 188 bits (476), Expect = 1e-046
Identities = 98/267 (36%), Positives = 159/267 (59%), Gaps = 7/267 (2%)
Frame = -3
Query: 941 SQWASAAGVDQKTLRKRIT-------HGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDL 783
+Q GVD R+ + Q K M+++N+RLVISIAK Y G+ F DL
Sbjct: 406 AQVGQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDL 465
Query: 782 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 603
+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R IR+P HM+E ++
Sbjct: 466 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLV 525
Query: 602 EARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 423
+Q+ E G +P EE+AE + ++++ V+ K P SL+ IG + + + I
Sbjct: 526 RTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIE 585
Query: 422 DPEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSR 243
D A D +++ +++ +VL L R+++V+R FG+ TL+E+G+ V+R
Sbjct: 586 DKNAILPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR 645
Query: 242 ERVRQIESSAFRKLKNKKRNSHLQQYL 162
ER+RQIE+ A RKLK+ R+ L+ +L
Sbjct: 646 ERIRQIEAKALRKLKHPSRSRKLRSFL 672
>sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2
Length = 684
Score = 188 bits (475), Expect = 2e-046
Identities = 93/236 (39%), Positives = 148/236 (62%)
Frame = -3
Query: 869 KDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 690
K M+++N+RLVISIAK Y G+ F DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
Query: 689 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLM 510
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G +P EE+AE + ++++
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
Query: 509 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRK 330
VL K P SL+ +G + + I D A D ++ +R+ +VL L R+
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
Query: 329 KQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
++V+R FG+ TL+E+G+ V+RER+RQIE+ A RKLK+ R+ L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobium meliloti
GN=rpoD PE=3 SV=1
Length = 684
Score = 188 bits (475), Expect = 2e-046
Identities = 93/236 (39%), Positives = 148/236 (62%)
Frame = -3
Query: 869 KDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 690
K M+++N+RLVISIAK Y G+ F DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
Query: 689 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRLM 510
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G +P EE+AE + ++++
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
Query: 509 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRK 330
VL K P SL+ +G + + I D A D ++ +R+ +VL L R+
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
Query: 329 KQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
++V+R FG+ TL+E+G+ V+RER+RQIE+ A RKLK+ R+ L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Treponema pallidum
GN=rpoD PE=3 SV=1
Length = 611
Score = 186 bits (471), Expect = 4e-046
Identities = 88/238 (36%), Positives = 151/238 (63%)
Frame = -3
Query: 875 QCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 696
+ KD++I +N+RLV+SIAK Y G+ F DLVQEG GL++ EKF+ KG+KFSTYA W
Sbjct: 372 KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATW 431
Query: 695 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKR 516
WI+QA+ +S+SDQ+R IR+P HM+E +V +QL + G +P +EE+A+ ++++
Sbjct: 432 WIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEK 491
Query: 515 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGT 336
+ V + P SL+ IG + + + D + E + + +++++ +L L
Sbjct: 492 VKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPA 551
Query: 335 RKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
R+ +V+R FG++ +TL+E+G V+RER+RQIE+ A ++L++ + + L+ +L
Sbjct: 552 REHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,545,185,555
Number of Sequences: 518415
Number of Extensions: 16545185555
Number of Successful Extensions: 102511304
Number of sequences better than 0.0: 0
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