BLASTX 7.6.2
Query= UN04022 /QuerySize=1499
(1498 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, AT... 732 1e-211
TAIR9_protein||AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT... 244 2e-064
TAIR9_protein||AT3G53920.1 | Symbols: SIGC, SIG3 | SIGC (RNA POL... 207 2e-053
TAIR9_protein||AT5G13730.1 | Symbols: SIG4, SIGD | SIG4 (SIGMA F... 182 7e-046
TAIR9_protein||AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RP... 171 1e-042
TAIR9_protein||AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | SIGE ... 142 6e-034
>TAIR9_protein||AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1,
ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding /
DNA-directed RNA polymerase/ sigma factor/ transcription factor |
chr1:2703461-2706696 FORWARD
Length = 573
Score = 732 bits (1889), Expect = 1e-211
Identities = 380/450 (84%), Positives = 408/450 (90%), Gaps = 7/450 (1%)
Frame = -3
Query: 1496 TLFKNTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLAVSDAGVVSDRATAPAPKCNKE 1317
TLFKN++N+ L SST DKRSKWDQFTEKERAGILGHLAVSD G+VSD+ TA A NKE
Sbjct: 129 TLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASA--SNKE 186
Query: 1316 SSDDLTPEKQ-DVEPLEEEEEELLSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGS 1140
S DL EKQ +VE LEE+ SV+ AVRSTRQTERKARR KGLEKTASG+ SVKTGS
Sbjct: 187 SIGDLESEKQEEVELLEEQP----SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGS 242
Query: 1139 SSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERC 960
S +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE +LS GIQDLLKLERLQ ELTER
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERS 302
Query: 959 GHQPTFSQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLV 780
G QPTF+QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGM+ QDLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362
Query: 779 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 600
QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422
Query: 599 ARKQLYSETGMQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISD 420
ARKQLYSETG PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEVI+D
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIAD 482
Query: 419 PEAETSEDILMKQFMRQDLDKVLDPLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRE 240
PEA TSEDIL+K+FMRQDLDKVLD LGTR+KQVIRW FGMEDGRMKTLQEIGE MGVSRE
Sbjct: 483 PEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRE 542
Query: 239 RVRQIESSAFRKLKNKKRNSHLQQYLVAQT 150
RVRQIESSAFRKLKNKKRN+HLQQYLVAQ+
Sbjct: 543 RVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
>TAIR9_protein||AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA
POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/
sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Length = 548
Score = 244 bits (621), Expect = 2e-064
Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 1/356 (0%)
Frame = -3
Query: 1232 VRSTRQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK 1053
VRS RQ ER+A+ + + + +S KK+ Q D++D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKY-KQGADNDDALQLFLWGPETKQ 246
Query: 1052 LLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQ 873
LLTA+EE +L IQ LLKLE+++ +L + G +PT +WA A G+ L+ I G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 872 CKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 693
++++I +N+RLV+ IAK YQ G++FQDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366
Query: 692 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSMKRL 513
I+Q++RKS+ SR IRLP ++ +V EARK E +P EE+A G+S ++L
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426
Query: 512 MAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTR 333
+L + P S+ Q I + + E+ D ET + KQ MR + +L+ L +
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 486
Query: 332 KKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQY 165
++++I+ FG++ G+ ++L EIGE G+S+ERVRQ+ES A +LK + L Y
Sbjct: 487 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
>TAIR9_protein||AT3G53920.1 | Symbols: SIGC, SIG3 | SIGC (RNA POLYMERASE
SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma
factor/ transcription factor | chr3:19961041-19963820 REVERSE
Length = 572
Score = 207 bits (525), Expect = 2e-053
Identities = 104/295 (35%), Positives = 188/295 (63%), Gaps = 1/295 (0%)
Frame = -3
Query: 1043 AREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQCKD 864
+R E ++S G++ + +ER++ +L E G + S WA+AAG+++K L + + +G C+D
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334
Query: 863 RMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 684
++KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD T+G+KFSTY +WI++
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 683 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQ-PKNEEVAEATGLSMKRLMA 507
++ +S +R + +P ++ +++ARK L + G++ +EE+A+ TG S+K++ A
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRA 454
Query: 506 VLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPLGTRKK 327
K S+D+K+G K E D E+ E+ +M+Q R+D+ +L+ L R+K
Sbjct: 455 ANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514
Query: 326 QVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
QV+ +G++D R K+L+EIG+ + VS+E +R+IE A KL+++ L+ YL
Sbjct: 515 QVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>TAIR9_protein||AT5G13730.1 | Symbols: SIG4, SIGD | SIG4 (SIGMA FACTOR 4); DNA
binding / DNA-directed RNA polymerase/ sigma factor/ transcription
factor | chr5:4429132-4430744 REVERSE
Length = 420
Score = 182 bits (460), Expect = 7e-046
Identities = 100/300 (33%), Positives = 174/300 (58%), Gaps = 3/300 (1%)
Frame = -3
Query: 1064 SSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRIT 885
S S L+ EE QL +++ KLE L + E ++ AS G +++ + +
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 174
Query: 884 HGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTY 705
+ ++++ + RLV+SIA YQG G++ QDL+QEG GL+RGAE+FD +G+K STY
Sbjct: 175 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 234
Query: 704 AHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLS 525
+WWIKQA+ ++++ +SR+++LP M E T +V EA L + QP EE+AE L+
Sbjct: 235 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 294
Query: 524 MKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDP 345
+ + + + P SLD+ N + E++ P+ E+++ ++ M+ +++++L
Sbjct: 295 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 354
Query: 344 LGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQY 165
L R+ +V+ FG+ + +EIG+++ +SRERVRQI A +KL+N + L+ Y
Sbjct: 355 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
>TAIR9_protein||AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | SIGA
(SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma
factor/ transcription factor | chr1:24098497-24100746 FORWARD
Length = 503
Score = 171 bits (432), Expect = 1e-042
Identities = 118/379 (31%), Positives = 202/379 (53%), Gaps = 21/379 (5%)
Frame = -3
Query: 1250 LSVTSAVRSTRQTERKARRVKGLEKTASGMQSVKTGSSSRKKR-----VASQEIDHNDPL 1086
LS AV S + R+ K T SG+ + + ++KK A ++ +
Sbjct: 128 LSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSDVSSGKQV 187
Query: 1085 RYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQK 906
R S +L+ E +LS+ I+ L+L+ ++ L +R G +P+ Q A + + +
Sbjct: 188 RGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRA 247
Query: 905 TLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATK 726
L+ + ++++ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD++K
Sbjct: 248 ELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSK 307
Query: 725 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEV 546
GF+ STY +WWI+Q V ++L D SR +RLP H+ E ++ A+ +L E G+ P + +
Sbjct: 308 GFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRI 366
Query: 545 AEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEV----ISDPEAETS-----EDI 393
AE+ +S K++ A SLD+ +LN P E I+D E + +D+
Sbjct: 367 AESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDL 426
Query: 392 LMKQFMRQDLDKVLD-PLGTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESS 216
+K +++ K++ LG R+K++IR +G+ D T ++I + +G+SRERVRQ+
Sbjct: 427 ALK----EEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLV 481
Query: 215 AFRKLKNKKRNSHLQQYLV 159
A KLK+ R ++ ++
Sbjct: 482 ALEKLKHAARKRKMEAMIL 500
>TAIR9_protein||AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR
E); DNA binding / DNA-directed RNA polymerase/ sigma factor/
transcription factor | chr5:8157794-8159746 REVERSE
Length = 518
Score = 142 bits (357), Expect = 6e-034
Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 5/300 (1%)
Frame = -3
Query: 1052 LLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDQKTLRKRITHGTQ 873
+L++ E L + +Q + L ++ L + G +P ++ A + ++K+I G
Sbjct: 219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRA 278
Query: 872 CKDRMIKSNIRLVISIAKNYQGA---GMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 702
++++IK N+RLV+ + Y G FQDL Q G RGL+ ++F+ + F+ STY
Sbjct: 279 ARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYG 338
Query: 701 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGMQPKNEEVAEATGLSM 522
+WI+ A+ +S++ S R+PF + + +A+ +L+ E G P +EV E ++
Sbjct: 339 LFWIRHAIIRSMT-TSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITP 397
Query: 521 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMRQDLDKVLDPL 342
+R VL A KP SL+ K + + I+D + + + +R LD VLD L
Sbjct: 398 ERYREVLRAAKPVLSLNSKHSVTQE-EFINGITDVDGVGANNSRQPALLRLALDDVLDSL 456
Query: 341 GTRKKQVIRWSFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNSHLQQYL 162
++ VIR +G++ +TL EI + +SRE VR+ E A KLK++ R +L+QY+
Sbjct: 457 KPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 516
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,740,526,862
Number of Sequences: 33410
Number of Extensions: 2740526862
Number of Successful Extensions: 100678362
Number of sequences better than 0.0: 0
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