BLASTX 7.6.2
Query= UN04102 /QuerySize=1239
(1238 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G26665.1 | Symbols: | FUNCTIONS IN: molecular... 171 8e-043
TAIR9_protein||AT1G26665.2 | Symbols: | FUNCTIONS IN: molecular... 167 1e-041
TAIR9_protein||AT5G41910.1 | Symbols: | RNA polymerase II media... 163 4e-040
>TAIR9_protein||AT1G26665.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: RNA polymerase II mediator complex protein-related
(TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species:
Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr1:9214510-9215426 FORWARD
Length = 190
Score = 171 bits (433), Expect = 8e-043
Identities = 94/120 (78%), Positives = 101/120 (84%), Gaps = 5/120 (4%)
Frame = +2
Query: 380 LLSLNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFTS---KGCY**LHQVTKG 550
L LNSLV EL++M KLSEKCNIQ+PMEVL LIDDGKNPDEFT C +QVTKG
Sbjct: 72 LQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCI-ARNQVTKG 130
Query: 551 KTDAFKDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQSQSVLLPNGDAKVKNEI 730
KTDAFKDLRKHILEELE+ FPDEVD YREIRA+SAAEAKR AQSQSV LPNGDAKVKNE+
Sbjct: 131 KTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAEAKRLAQSQSV-LPNGDAKVKNEL 189
Score = 69 bits (167), Expect = 6e-012
Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 YQTNDGTA--TTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 380
YQTNDGT+ T ++D KENL+Q INSI+KTLG+LHQL LTV+SFTPA
Sbjct: 20 YQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPA 66
>TAIR9_protein||AT1G26665.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: RNA polymerase II mediator complex protein-related
(TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species:
Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr1:9214510-9215426 FORWARD
Length = 190
Score = 167 bits (422), Expect = 1e-041
Identities = 92/120 (76%), Positives = 99/120 (82%), Gaps = 5/120 (4%)
Frame = +2
Query: 380 LLSLNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFTS---KGCY**LHQVTKG 550
L LNSLV EL++M KLSEKCNIQ+PMEVL LIDDGKNPDEFT C +QVTKG
Sbjct: 72 LQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCI-ARNQVTKG 130
Query: 551 KTDAFKDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQSQSVLLPNGDAKVKNEI 730
KTDAFKDLRKHILEELE+ FPDEVD YREIRA+SAA KR AQSQSV LPNGDAKVKNE+
Sbjct: 131 KTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSV-LPNGDAKVKNEL 189
Score = 69 bits (167), Expect = 6e-012
Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 YQTNDGTA--TTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 380
YQTNDGT+ T ++D KENL+Q INSI+KTLG+LHQL LTV+SFTPA
Sbjct: 20 YQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPA 66
>TAIR9_protein||AT5G41910.1 | Symbols: | RNA polymerase II mediator complex
protein-related | chr5:16778160-16779032 REVERSE
Length = 187
Score = 163 bits (410), Expect = 4e-040
Identities = 93/136 (68%), Positives = 108/136 (79%), Gaps = 8/136 (5%)
Frame = +2
Query: 335 TPSSVTPYCLFFHTRLLSLNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFT-- 508
T SS TP L LNSLV EL++MAKLS+KCNIQVP+EVL LIDDGKNPDEFT
Sbjct: 55 TVSSFTPASQLH--LLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKD 112
Query: 509 --SKGCY**LHQVTKGKTDAFKDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQS 682
+K C +QVTKGK+DAFK LRKH+LEELE+ FPDEVD+YR+IRA+ AAEAKR AQ+
Sbjct: 113 VLNKNCI-AKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQT 171
Query: 683 QSVLLPNGDAKVKNEI 730
QSV LPNGDAKVK+E+
Sbjct: 172 QSV-LPNGDAKVKSEL 186
Score = 52 bits (123), Expect = 7e-007
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +3
Query: 249 QTNDGTATTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 380
+T T +D E LNQ INS QK L LLHQL+LTVSSFTPA
Sbjct: 19 KTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTVSSFTPA 62
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,783,668,172
Number of Sequences: 33410
Number of Extensions: 2783668172
Number of Successful Extensions: 100691002
Number of sequences better than 0.0: 0
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