BLASTX 7.6.2
Query= UN04205 /QuerySize=1469
(1468 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subunit 4 O... 684 5e-196
sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 O... 535 5e-151
sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=... 532 4e-150
sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 O... 529 3e-149
sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5... 528 6e-149
sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 O... 527 8e-149
sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5... 527 1e-148
sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5... 526 2e-148
sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex su... 521 6e-147
sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 O... 521 8e-147
sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 O... 520 1e-146
sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5... 515 5e-145
sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 O... 508 4e-143
sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex su... 481 7e-135
sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex su... 480 2e-134
sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=M... 275 9e-073
sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=P... 271 1e-071
sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=P... 270 2e-071
sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=P... 268 7e-071
sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=M... 267 1e-070
>sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis
thaliana GN=NAP57 PE=1 SV=1
Length = 565
Score = 684 bits (1764), Expect = 5e-196
Identities = 340/356 (95%), Positives = 353/356 (99%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
PL +YIRYGVINLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR
Sbjct: 73 PLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 132
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIY+
Sbjct: 133 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYE 192
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN+NMV
Sbjct: 193 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMV 252
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
TMHDVMDAQ++YDN +DESYLRRVIMPLE+ILTSYKRLVVKDSAVNAICYGAKLMIPGLL
Sbjct: 253 TMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLL 312
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 566
RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG
Sbjct: 313 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 372
Query: 565 LGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAMTAGAAAAPDKLQ 398
LGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDA+ AGAAAAP++++
Sbjct: 373 LGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIK 428
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus
GN=DKC1 PE=2 SV=1
Length = 516
Score = 535 bits (1376), Expect = 5e-151
Identities = 256/333 (76%), Positives = 299/333 (89%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
DY+R G INLDKPSNPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVK
Sbjct: 83 DYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVK 142
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQ AGKEYV + RLH+A+ A++ARA+E+LTGA+FQRPPLI+AVKRQLR+RTIY+SKL
Sbjct: 143 SQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKL 202
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD +R L +FWVSCEAGTYIRT+CVHLGLLLGVGG MQELRRVRSGILGE DNMVTMH
Sbjct: 203 VEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTMH 262
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK+M+PG+LR+E
Sbjct: 263 DVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYE 322
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+ I++ E+V++TTKGEAI + IA MTT+V++TCDHGVVAKIKRV+M+RDTYPRKWGLGP
Sbjct: 323 DGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGP 382
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
+AS KK +I G LDKHGKPNE TP W + V
Sbjct: 383 KASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV 415
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus
norvegicus GN=Dkc1 PE=1 SV=4
Length = 509
Score = 532 bits (1368), Expect = 4e-150
Identities = 254/349 (72%), Positives = 306/349 (87%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
+Y+R G INLDKPSNPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVK
Sbjct: 86 EYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVK 145
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQ AGKEYV V RLH+A+ A+++RALE+LTGA+FQRPPLI+AVKRQLR+RTIY+S++
Sbjct: 146 SQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRV 205
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD +R L VFWVSCEAGTYIRT+CVHLGLLLGVGG MQELRRVRSG++GE D+MVTMH
Sbjct: 206 VEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMH 265
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQ++YD+++DESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK+M+PGLLR+E
Sbjct: 266 DVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYE 325
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+ I+V EVV++TTKGEA+ V IA MTT+V++TCDHGVVAKIKRV+M+RDTYPRKWGLGP
Sbjct: 326 DGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGP 385
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAMTAGAAAAP 410
+AS KK+LI G LDKHG+P + TP W+R+ V + A A P
Sbjct: 386 KASQKKQLIKQGLLDKHGRPTDGTPASWTRDYVDYSDSSKKATAAEATP 434
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 OS=Homo sapiens
GN=DKC1 PE=1 SV=3
Length = 514
Score = 529 bits (1361), Expect = 3e-149
Identities = 249/333 (74%), Positives = 297/333 (89%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
DYIR G INLDKPSNPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVK
Sbjct: 85 DYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVK 144
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQ AGKEYV + RLH+A+ +++RALE+LTGA+FQRPPLI+AVKRQLR+RTIY+SK+
Sbjct: 145 SQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKM 204
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD +R L +FWVSCEAGTYIRT+CVHLGLLLGVGG MQELRRVRSG++ E D+MVTMH
Sbjct: 205 IEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMH 264
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQW+YDN+KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK+M+PG+LR+E
Sbjct: 265 DVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYE 324
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+ I+V E+V++TTKGEAI + IA MTT+V++TCDHG+VAKIKRV+M+RDTYPRKWGLGP
Sbjct: 325 DGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGP 384
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
+AS KK +I G LDKHGKP + TP W + V
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQEYV 417
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5
OS=Kluyveromyces lactis GN=CBF5 PE=3 SV=1
Length = 474
Score = 528 bits (1358), Expect = 6e-149
Identities = 254/353 (71%), Positives = 297/353 (84%)
Frame = -1
Query: 1462 LLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 1283
L YI GVINLDKPSNPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRL
Sbjct: 52 LKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRL 111
Query: 1282 VKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQS 1103
VKSQQGAGKEYVC+ RLH A+ D ++ R LE+LTGA+FQRPPLISAVKRQLR+RTIY S
Sbjct: 112 VKSQQGAGKEYVCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDS 171
Query: 1102 KLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVT 923
L+E+D R+L VFW SCEAGTY+RT+CVHLG+LLGVGGHMQELRRVRSG L ENDN+VT
Sbjct: 172 NLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVT 231
Query: 922 MHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLR 743
+HDVMDAQW+YDN +DESYLR++I PLE +L YKR+VVKDSAVNA+CYGAKLMIPGLLR
Sbjct: 232 LHDVMDAQWVYDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLR 291
Query: 742 FENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGL 563
+E I++ EVVL+TTKGEAIAV IA+M+T +ATCDHGVVAK+KR +M+RD YPR+WGL
Sbjct: 292 YEEGIELYDEVVLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGL 351
Query: 562 GPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAMTAGAAAAPDK 404
GP A KK++ ADGKLDK+G+ NE TP W + V + TA A+ + +K
Sbjct: 352 GPIAQKKKQMKADGKLDKYGRANENTPETWKKTYVSLENAEPTTAPASKSEEK 404
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4
OS=Schizosaccharomyces pombe GN=cbf5 PE=2 SV=1
Length = 474
Score = 527 bits (1357), Expect = 8e-149
Identities = 249/336 (74%), Positives = 296/336 (88%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +Y+ GVINLDKP+NPSSHEVVAW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATR
Sbjct: 57 PIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATR 116
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
LVKSQQ AGKEYVCV RLH +V VA A+E+LTGA+FQRPPLISAVKRQLRIR+IY+
Sbjct: 117 LVKSQQSAGKEYVCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYE 176
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
SKL+E+D +R+L VFW SCEAGTY+RT+CVHLGLLLGVGGHMQELRRVRSG L END++V
Sbjct: 177 SKLIEFDNERNLAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIV 236
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
TMHDV+DAQW+YDN +DESYLRRVI PLE +L YKR+VVKDSAVNAICYGAKLMIPGLL
Sbjct: 237 TMHDVLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLL 296
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 566
R+E I+V E+VL+TTKGEAIAVGIA+M+T ++TCDHGVVAK+KR +M+RD YPR+WG
Sbjct: 297 RYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWG 356
Query: 565 LGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
LGP++ KK L +GKLDK+G+PNE TP +WS++ +
Sbjct: 357 LGPQSMKKKTLKKEGKLDKYGRPNENTPADWSKSYI 392
>sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella
nidulans GN=cbf5 PE=2 SV=1
Length = 481
Score = 527 bits (1355), Expect = 1e-148
Identities = 260/357 (72%), Positives = 301/357 (84%), Gaps = 4/357 (1%)
Frame = -1
Query: 1462 LLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 1283
L YI GVINLDKPSNPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 54 LKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRL 113
Query: 1282 VKSQQGAGKEYVCVARLHSAVP-DVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
VKSQQGAGKEYVCV RLH +P A+ RALE+LTGA+FQRPPLISAVKRQLRIRTI++
Sbjct: 114 VKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHE 173
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
SKL E+D +RHL VFWVSCEAGTYIRT+CVHLGLLLGVG HMQELRRVRSG + EN+ MV
Sbjct: 174 SKLYEFDNERHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMV 233
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
T+HDV+DAQW+YDN +DESYLR+VI PLE +LT+YKR+VVKDSAVNA+CYGAKLMIPGLL
Sbjct: 234 TLHDVLDAQWLYDNQRDESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLL 293
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 566
RFE I++G EVVLMTTKGEAIA+GIA+M+T ++TCDHGVVAK+KR +M+RD YPR+WG
Sbjct: 294 RFEAGIELGEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWG 353
Query: 565 LGPRASMKKKLIADGKLDKHGKPNEKTPVEWS---RNVVLPTGGDAMTAGAAAAPDK 404
LGP A KKKL + GKLDK+G+ NE TP +W ++ P G + A A ++
Sbjct: 354 LGPVALEKKKLKSSGKLDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEE 410
>sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Aspergillus
fumigatus GN=cbf5 PE=2 SV=1
Length = 487
Score = 526 bits (1354), Expect = 2e-148
Identities = 258/331 (77%), Positives = 291/331 (87%), Gaps = 1/331 (0%)
Frame = -1
Query: 1462 LLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 1283
L YI GVINLDKPSNPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 59 LKSYISSGVINLDKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRL 118
Query: 1282 VKSQQGAGKEYVCVARLHSAVP-DVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
VKSQQGAGKEYVCV RLH +P A+ RALE+LTGA+FQRPPLISAVKRQLRIRTI++
Sbjct: 119 VKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHE 178
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
SKL E+D DRHL VFWVSCEAGTYIRT+CVHLGLLLGVG HMQELRRVRSG + EN+ +V
Sbjct: 179 SKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLV 238
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
T+HDV+DAQWMYDN +DESYLRRVI PLE +LT+YKR+VVKDSAVNA+CYGAKLMIPGLL
Sbjct: 239 TLHDVLDAQWMYDNQRDESYLRRVIQPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLL 298
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 566
RFE I+V EVVLMTTKGEAIA+GIA+M+T ++TCDHGVVAK+KR +M+RD YPR+WG
Sbjct: 299 RFEAGIEVNEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWG 358
Query: 565 LGPRASMKKKLIADGKLDKHGKPNEKTPVEW 473
LGP A KKKL + GKLDK+G+ NE TP +W
Sbjct: 359 LGPVALEKKKLKSAGKLDKYGRANEDTPAKW 389
>sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4
OS=Dictyostelium discoideum GN=nola4 PE=1 SV=1
Length = 540
Score = 521 bits (1341), Expect = 6e-147
Identities = 248/345 (71%), Positives = 296/345 (85%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +Y++YG+INLDKPSNPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATR
Sbjct: 66 PIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATR 125
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
LVKSQQGAGKEY+ + RLH A+ ++++A+++LTGA+FQRPP SAVK++LR+RTI+
Sbjct: 126 LVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHN 185
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
SKLLE+D +R+L + WV CEAGTYIRT+CVH+GLL+GVGGHMQELRRVRSGI+ E V
Sbjct: 186 SKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQV 245
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
TMHDV DAQ+ YDN KDESYLRRVI PLE ILT+YKR+VVKDSA+NAICYGAKLMIPGLL
Sbjct: 246 TMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLL 305
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWG 566
R+E DI+ EVVL+TTKGEAIA+GIA+MTT+ MATCDHGVVA IKRV+MDRD YP +WG
Sbjct: 306 RYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWG 365
Query: 565 LGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAMT 431
LGP+A +KK++I DGKLDK GKPNEKTP +W+ TG A T
Sbjct: 366 LGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTGQVATT 410
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces
cerevisiae GN=CBF5 PE=1 SV=1
Length = 483
Score = 521 bits (1340), Expect = 8e-147
Identities = 249/335 (74%), Positives = 289/335 (86%)
Frame = -1
Query: 1462 LLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 1283
L YI GVINLDKPSNPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 53 LKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRL 112
Query: 1282 VKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQS 1103
VKSQQGAGKEYVC+ RLH A+ D + R+LE+LTGA+FQRPPLISAVKRQLR+RTIY+S
Sbjct: 113 VKSQQGAGKEYVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYES 172
Query: 1102 KLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVT 923
L+E+D R+L VFW SCEAGTY+RT+CVHLG+LLGVGGHMQELRRVRSG L ENDNMVT
Sbjct: 173 NLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVT 232
Query: 922 MHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLR 743
+HDVMDAQW+YDN +DESYLR +I PLE +L YKR+VVKDSAVNA+CYGAKLMIPGLLR
Sbjct: 233 LHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLR 292
Query: 742 FENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGL 563
+E I++ E+VL+TTKGEAIAV IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGL
Sbjct: 293 YEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGL 352
Query: 562 GPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
GP A KK++ ADGKLDK+G+ NE TP +W + V
Sbjct: 353 GPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYV 387
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus
GN=Dkc1 PE=1 SV=3
Length = 509
Score = 520 bits (1338), Expect = 1e-146
Identities = 248/351 (70%), Positives = 301/351 (85%), Gaps = 2/351 (0%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
DYIR G INLDKPSNPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVK
Sbjct: 85 DYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVK 144
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQ AGKEYV + RLH+A+ +++RALE+LTGA+FQRPPLI+AVKRQLR+RTIY+SK+
Sbjct: 145 SQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKM 204
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD +R L +FWVSCEAGTYIRT+CVHL +LG G MQELRRVRSG++ E D+MVTMH
Sbjct: 205 IEYDPERRLGIFWVSCEAGTYIRTLCVHLCFVLGSGCQMQELRRVRSGVMSEKDHMVTMH 264
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQW+YDN+KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK+M+PGLLR+E
Sbjct: 265 DVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYE 324
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+ I+V E+V++TTKGEAI + IA MTT+V++TCDHG+VAKIKRV+M+RDTYPRKWGLGP
Sbjct: 325 DGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGP 384
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV--LPTGGDAMTAGAAAAP 410
+AS KK +I G LDKHGKP + TP W ++ + +G + + A AP
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTEAVQAP 435
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida
albicans GN=CBF5 PE=3 SV=1
Length = 479
Score = 515 bits (1324), Expect = 5e-145
Identities = 243/330 (73%), Positives = 290/330 (87%)
Frame = -1
Query: 1453 YIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 1274
Y+ GVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKS
Sbjct: 57 YVSSGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKS 116
Query: 1273 QQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKLL 1094
QQGAGKEYVC+ RLH + D ++ RALE+LTGA+FQRPPLISAVKRQLR+RT+Y SKL+
Sbjct: 117 QQGAGKEYVCIVRLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLI 176
Query: 1093 EYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMHD 914
E+D R L VFW SCEAGTY+RT+CVHLG+LLGVGGHMQELRRVRSG + E+DN+VT+HD
Sbjct: 177 EFDNKRGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHD 236
Query: 913 VMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 734
V+DAQ++YDN +DESYLR++I PLE +L YKR+VVKDSAVN++CYGAKLMIPGLLR+E
Sbjct: 237 VLDAQYVYDNTRDESYLRKIIQPLESLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEE 296
Query: 733 DIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 554
I++ EVVLMTTKGEAIA+GIA+M+T + +CDHG+VAK+KR +M+RDTYPR+WGLGP
Sbjct: 297 GIELYDEVVLMTTKGEAIAIGIAQMSTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPI 356
Query: 553 ASMKKKLIADGKLDKHGKPNEKTPVEWSRN 464
A KK++ ADGKLDK+G+ NE TP W ++
Sbjct: 357 AQKKKQMKADGKLDKYGRVNENTPENWKKD 386
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila
melanogaster GN=Nop60B PE=1 SV=1
Length = 508
Score = 508 bits (1308), Expect = 4e-143
Identities = 246/359 (68%), Positives = 294/359 (81%), Gaps = 5/359 (1%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
+Y++ G INLDKPSNPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVK
Sbjct: 83 EYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVK 142
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQ AGKEYV + +LH AV VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y SKL
Sbjct: 143 SQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKL 202
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
L+YD R++ VFWVSCEAG+YIRTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMH
Sbjct: 203 LDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMH 262
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DA W+Y+N+KDES LRRVI PLE +L ++KR+++KDS+VNA+CYGAK+ +PG+LR+E
Sbjct: 263 DVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLRYE 322
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+ I++ E+V+ TTKGEAI + IA MTT+ MA+CDHGVVAKIKRV+M+RDTYPRKWGLGP
Sbjct: 323 DGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGLGP 382
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEW-----SRNVVLPTGGDAMTAGAAAAPDKLQL 395
+AS KK LIA GKLDK G+PNE TP EW N P + ++ P K +L
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPAAQEVSPTNGSSEPSKRKL 441
>sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis briggsae GN=CBG18316 PE=3 SV=1
Length = 445
Score = 481 bits (1237), Expect = 7e-135
Identities = 227/333 (68%), Positives = 277/333 (83%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
+YI G NLDKPSNPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL K
Sbjct: 73 NYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAK 132
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQGAGKEY+C+ +LH V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+Y++K
Sbjct: 133 SQQGAGKEYICIFKLHEEVEDERKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKF 192
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD + + +F CE+GTY+RT+CVHLGL+LG GG MQELRR RSGI EN+NMVTMH
Sbjct: 193 IEYDPAQQMGIFNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMH 252
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQ+M D KDESY+R ++ PLE +LT +KR+VVKDS VNAICYGAK++IPG+LR++
Sbjct: 253 DVLDAQYMLDTQKDESYMRHIVRPLEALLTQHKRVVVKDSCVNAICYGAKILIPGILRYD 312
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+DI+VG E+V+MTTKGEAI + IA+M+TS +A+ DHG+VAK KRV+M+RD Y RKWGLGP
Sbjct: 313 DDIEVGKEIVIMTTKGEAICIAIAQMSTSTIASVDHGIVAKSKRVIMERDVYGRKWGLGP 372
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
AS KK+++ DG LDK GKPN TP W++ V
Sbjct: 373 VASKKKQMVKDGLLDKFGKPNITTPKSWAKEYV 405
>sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis elegans GN=K01G5.5 PE=2 SV=1
Length = 445
Score = 480 bits (1233), Expect = 2e-134
Identities = 225/333 (67%), Positives = 277/333 (83%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
+YI G NLDKPSNPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL K
Sbjct: 73 NYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAK 132
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
SQQGAGKEY+C+ +LH V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+Y++K
Sbjct: 133 SQQGAGKEYICIFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKF 192
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
+EYD + + +F CE+GTY+RT+CVHLGL+LG GG MQELRR RSGI EN+NMVTMH
Sbjct: 193 IEYDPAQQMGIFNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMH 252
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
DV+DAQ++ D KDESY+R ++ PLE +LT +KR+VVKDS +NAICYGAK++IPG+LR++
Sbjct: 253 DVLDAQYLLDTQKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGILRYD 312
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP 557
+DI+VG E+V+M+TKGEAI + IA+M TS +A+ DHGVVAK KRV+M+RD Y RKWGLGP
Sbjct: 313 DDIEVGKEIVIMSTKGEAICIAIAQMNTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGP 372
Query: 556 RASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 458
AS KK+++ DG LDK GKPN+ TP W++ V
Sbjct: 373 VASKKKQMVKDGLLDKFGKPNDTTPKSWAKEYV 405
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus
kandleri GN=truB PE=3 SV=1
Length = 338
Score = 275 bits (701), Expect = 9e-073
Identities = 144/304 (47%), Positives = 200/304 (65%), Gaps = 10/304 (3%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +YI GVINLDKP+ P+SHEVVAW+K I + K GH GTLDPKVTG L + +++AT+
Sbjct: 37 PIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLPIALEKATK 96
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
++++ AGKEYV + LH V D ++ R ++ G + QRPPL SAVKR++R + IY
Sbjct: 97 IIQTLLPAGKEYVTIMHLHGDV-DEEELERVVKEFEGTILQRPPLRSAVKRRVRPKKIYY 155
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
+LE D V+ V C+AGTYIR +C +G LGVG HM ELRR R+G E +N V
Sbjct: 156 IDILEIDG--RDVLMRVGCQAGTYIRKLCHDIGEALGVGAHMAELRRTRTGPFSE-ENAV 212
Query: 925 TMHDVMDAQWMYDNYKDESY---LRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIP 755
T+HDV DA Y+ +K+E + LR V+ P+E L R+ ++D+AV+AIC+GA L P
Sbjct: 213 TLHDVKDA---YEFWKEEGWEEPLRHVVRPMEEGLEHLPRIEIRDTAVDAICHGANLAAP 269
Query: 754 GLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPR 575
G++R E I G V + T KGEA+A+G+A+ T M D G++ KRV+M+ TYP+
Sbjct: 270 GIVRVEKGIQPGDLVAIFTLKGEAVALGVAKATWKEMLHADRGIMVDTKRVLMEPGTYPK 329
Query: 574 KWGL 563
WGL
Sbjct: 330 AWGL 333
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus
abyssi GN=truB PE=1 SV=1
Length = 334
Score = 271 bits (691), Expect = 1e-071
Identities = 141/296 (47%), Positives = 194/296 (65%), Gaps = 3/296 (1%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +I+YGVINLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V ++RATR
Sbjct: 39 PIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATR 98
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+LR R +Y
Sbjct: 99 VVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEGEIIQRPPLRSAVKRRLRTRKVYY 157
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
++LE D V+F V EAGTYIR++ H+GL LGVG HM ELRR RSG E++ +V
Sbjct: 158 IEILEIDG--RDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLV 215
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
T+HD++D + E Y+R+ I P+E + ++ +KDSAV A+ +GA L +PG++
Sbjct: 216 TLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKIWIKDSAVAAVAHGANLTVPGIV 275
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 578
+ I G V +MT K E +A+G A M+T M G+ +++V M RD YP
Sbjct: 276 KLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGIAVDVEKVFMPRDWYP 331
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus
horikoshii GN=truB PE=3 SV=1
Length = 334
Score = 270 bits (690), Expect = 2e-071
Identities = 142/296 (47%), Positives = 194/296 (65%), Gaps = 3/296 (1%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +I+YGVINLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V +++ATR
Sbjct: 39 PIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALEKATR 98
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+LR R +Y
Sbjct: 99 VVQALLPAGKEYVALMHLHGDVPE-NKIIDVMKEFEGEIIQRPPLRSAVKRRLRTRKVYY 157
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
++LE D V+F V EAGTYIR++ H+GL LGVG HM ELRR RSG E++ +V
Sbjct: 158 IEILEIDG--RDVLFKVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLV 215
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
T+HD++D + E YLRR I P+E + ++ +KDSAV A+ +GA L +PG++
Sbjct: 216 TLHDLVDYYHFWKEDGIEKYLRRAIQPMEKAVEHLPKIWIKDSAVAAVAHGANLTVPGIV 275
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 578
+ I G V +MT K E +A+G A MT+ M G+ +++V M RD YP
Sbjct: 276 KLNVGIKRGDLVAIMTLKDELVALGKAMMTSQEMMQRSKGIAVDVEKVFMPRDWYP 331
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus
furiosus GN=truB PE=1 SV=1
Length = 340
Score = 268 bits (685), Expect = 7e-071
Identities = 137/299 (45%), Positives = 196/299 (65%), Gaps = 3/299 (1%)
Frame = -1
Query: 1465 PLLDYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 1286
P+ +I++GVINLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V +++ATR
Sbjct: 39 PIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATR 98
Query: 1285 LVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQ 1106
+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+LR R +Y
Sbjct: 99 VVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYY 157
Query: 1105 SKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMV 926
++LE + V+F V EAGTYIR++ H+GL LGVG HM ELRR RSG E++ ++
Sbjct: 158 IEVLEIEG--RDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLI 215
Query: 925 TMHDVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLL 746
T+HD++D + + E Y R+ I P+E + ++ +KDSAV A+ +GA L +PG+
Sbjct: 216 TLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIA 275
Query: 745 RFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKW 569
+ I G V +MT K E +A+G A MT+ M G+ +++V M RD YP+ W
Sbjct: 276 KLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW 334
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B
OS=Methanocaldococcus jannaschii GN=truB PE=1 SV=1
Length = 336
Score = 267 bits (682), Expect = 1e-070
Identities = 141/296 (47%), Positives = 189/296 (63%), Gaps = 4/296 (1%)
Frame = -1
Query: 1456 DYIRYGVINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 1277
D I+YGV+ +DKP P+SHEV W+K+IL ++K GH GTLDPKVTG L V ++RAT+ +
Sbjct: 41 DLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIP 100
Query: 1276 SQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYQSKL 1097
KEYVC+ LH + + R + TG ++QRPPL +AVKR+LRIR I++ +L
Sbjct: 101 MWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELEL 159
Query: 1096 LEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNMVTMH 917
L D D V+F V C++GTYIR +C +G LG HMQELRR +SG E D V +
Sbjct: 160 L--DKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKD-AVYLQ 216
Query: 916 DVMDAQWMYDNYKDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFE 737
D++DA + DE LRRVI P+E L K++VVKDSAV+AIC+GA + + G+ +
Sbjct: 217 DLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAKLS 276
Query: 736 NDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKW 569
I G V++ T KGEA+AVG A M T + D GV ++RV MDR TYPR W
Sbjct: 277 KGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYPRMW 332
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,545,185,555
Number of Sequences: 518415
Number of Extensions: 16545185555
Number of Successful Extensions: 102511304
Number of sequences better than 0.0: 0
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