BLASTX 7.6.2
Query= UN04350 /QuerySize=1332
(1331 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransfera... 171 1e-041
sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransfera... 129 7e-029
sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransfera... 127 2e-028
sp|Q5LY12|RSMA_STRT1 Ribosomal RNA small subunit methyltransfera... 127 3e-028
sp|Q5M2L6|RSMA_STRT2 Ribosomal RNA small subunit methyltransfera... 127 3e-028
sp|Q03IR2|RSMA_STRTD Ribosomal RNA small subunit methyltransfera... 127 3e-028
sp|B9DVT4|RSMA_STRU0 Ribosomal RNA small subunit methyltransfera... 123 4e-027
sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransfera... 118 1e-025
sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransfera... 117 2e-025
sp|Q3ZZE6|RSMA_DEHSC Ribosomal RNA small subunit methyltransfera... 78 1e-013
sp|A5FS52|RSMA_DEHSB Ribosomal RNA small subunit methyltransfera... 77 3e-013
sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyl... 71 2e-011
sp|Q3Z9F0|RSMA_DEHE1 Ribosomal RNA small subunit methyltransfera... 70 3e-011
sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransfera... 68 1e-010
sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransfera... 66 4e-010
sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransfera... 65 8e-010
sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransfera... 65 8e-010
sp|B3QMU5|RSMA_CHLP8 Ribosomal RNA small subunit methyltransfera... 65 8e-010
sp|B0TZ54|RSMA_FRAP2 Ribosomal RNA small subunit methyltransfera... 65 1e-009
sp|O51536|RSMA_BORBU Ribosomal RNA small subunit methyltransfera... 64 2e-009
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A
OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 171 bits (432), Expect = 1e-041
Identities = 102/275 (37%), Positives = 161/275 (58%), Gaps = 17/275 (6%)
Frame = -2
Query: 1087 LNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVL 908
LN G FP+K L Q+++++ +I ++ A++V+ G+ VLEIGPG GSLT +L + A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 907 AIDKDPHMVDLVRE--RFQ-GSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDFALAKV 737
A++KD L RE RFQ S + ++ ED + + + S L D AKV
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQSRLR-------DDQKAKV 122
Query: 736 VSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSE 557
++NLP++++T ++ ++ +FS + +++Q+E A R+ S+Y I +NFYS+
Sbjct: 123 IANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMT-ALPGQSDYSSFTIFLNFYSK 181
Query: 556 PEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKRKMLRKS 377
P Y F V+R F+P PKVD+A+V +LK P P + FF + +AF +RKMLR S
Sbjct: 182 PRYGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRAS 238
Query: 376 LQHLSSSPEIEKALGVAGLPVTSRPEELTLGDFVK 272
L+ L +I AL + G +RPE L+L DF+K
Sbjct: 239 LKSLFDPSKISNALEIIGQNPQARPEVLSLEDFIK 273
>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A
OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1
Length = 288
Score = 129 bits (322), Expect = 7e-029
Identities = 88/279 (31%), Positives = 146/279 (52%), Gaps = 8/279 (2%)
Frame = -2
Query: 1099 TLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLG 920
TL + +G PRKS GQ+++++++I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 919 ASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDFALAK 740
V+AI+ D + + E G + +++ D +K + L T P + K
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTY---K 126
Query: 739 VVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALR-LVEPALRTSEYRPINILVNFY 563
VV+NLP+ I+T ++ LL + +VL++Q E R L P +Y ++++V +Y
Sbjct: 127 VVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYY 184
Query: 562 SEPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKRKMLR 383
+EP +V R F+P+P+VD+ V+ + R V FF +V +AFN +RK +
Sbjct: 185 TEPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTIL 243
Query: 382 KSLQHLS-SSPEIEKALGVAGLPVTSRPEELTLGDFVKL 269
+L L +I +AL AG+ R E L + +F +
Sbjct: 244 NALGSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A
OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA
PE=3 SV=1
Length = 301
Score = 127 bits (319), Expect = 2e-028
Identities = 86/273 (31%), Positives = 146/273 (53%), Gaps = 15/273 (5%)
Frame = -2
Query: 1060 KSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHMV 881
K LGQ+++++ +I D++ A++ D V+EIGPG GSLT ++ V A +KD +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 880 DLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDFALAKVVSNLPFNISTDV 701
++RE F G N +V+ +D ++ + F ++R +S KV++NLP+ I+T V
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRS---VKVLANLPYYITTPV 136
Query: 700 VKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPEYNFRVARENF 521
+ LL FS +VL++Q E A R+ A + +Y +++ V +Y E E +V F
Sbjct: 137 IMGLLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVF 195
Query: 520 FPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKRKMLRKSLQHLSSSPEIEK 341
P+P+V ++++ K H V + FF +V + F +RK L+ SL SS +++K
Sbjct: 196 IPRPRVYSSIIKIK-PHSEPVYRVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDK 253
Query: 340 -----ALGVAGLPVTSRPEELTLGDFVKLHNVI 257
A+ GL R E+LT+ L N +
Sbjct: 254 GIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286
>sp|Q5LY12|RSMA_STRT1 Ribosomal RNA small subunit methyltransferase A
OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rsmA PE=3 SV=1
Length = 290
Score = 127 bits (317), Expect = 3e-028
Identities = 85/291 (29%), Positives = 152/291 (52%), Gaps = 16/291 (5%)
Frame = -2
Query: 1111 DYHATLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVL 932
DY T L G +KS GQ+++ +++I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 931 LNLGASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDF 752
+ V+A + D +V ++ + + + KV++ED +K+ +++ + F +PD
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF------ENPDL 118
Query: 751 ALAKVVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINIL 575
+ KVV+NLP+ I+T ++ L+ FS V+++Q E A R+ EP T Y ++I
Sbjct: 119 PI-KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEP--NTKAYGSLSIA 175
Query: 574 VNFYSEPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKR 395
V +Y + F V R F P P VD+A++ + + +V FF + ++F +R
Sbjct: 176 VQYYMTAKVAFAVPRTVFVPAPNVDSAILKM-TRRKQPLVEVKDEDFFFRVSKASFLHRR 234
Query: 394 KMLRKSL-QHLSSSPEI----EKALGVAGLPVTSRPEELTLGDFVKLHNVI 257
K L +L H S E+ ++AL A + + R E L++ DF +L + +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDAL 285
>sp|Q5M2L6|RSMA_STRT2 Ribosomal RNA small subunit methyltransferase A
OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmA
PE=3 SV=1
Length = 290
Score = 127 bits (317), Expect = 3e-028
Identities = 85/291 (29%), Positives = 152/291 (52%), Gaps = 16/291 (5%)
Frame = -2
Query: 1111 DYHATLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVL 932
DY T L G +KS GQ+++ +++I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 931 LNLGASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDF 752
+ V+A + D +V ++ + + + KV++ED +K+ +++ + F +PD
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF------ENPDL 118
Query: 751 ALAKVVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINIL 575
+ KVV+NLP+ I+T ++ L+ FS V+++Q E A R+ EP T Y ++I
Sbjct: 119 PI-KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEP--NTKAYGSLSIA 175
Query: 574 VNFYSEPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKR 395
V +Y + F V R F P P VD+A++ + + +V FF + ++F +R
Sbjct: 176 VQYYMTTKMAFAVPRTVFVPAPNVDSAILKM-TRRKQPLVEVKDEDFFFRVSKASFLHRR 234
Query: 394 KMLRKSL-QHLSSSPEI----EKALGVAGLPVTSRPEELTLGDFVKLHNVI 257
K L +L H S E+ ++AL A + + R E L++ DF +L + +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDAL 285
>sp|Q03IR2|RSMA_STRTD Ribosomal RNA small subunit methyltransferase A
OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmA
PE=3 SV=1
Length = 290
Score = 127 bits (317), Expect = 3e-028
Identities = 85/291 (29%), Positives = 152/291 (52%), Gaps = 16/291 (5%)
Frame = -2
Query: 1111 DYHATLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVL 932
DY T L G +KS GQ+++ +++I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 931 LNLGASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDF 752
+ V+A + D +V ++ + + + KV++ED +K+ +++ + F +PD
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF------ENPDL 118
Query: 751 ALAKVVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINIL 575
+ KVV+NLP+ I+T ++ L+ FS V+++Q E A R+ EP T Y ++I
Sbjct: 119 PI-KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEP--NTKAYGSLSIA 175
Query: 574 VNFYSEPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKR 395
V +Y + F V R F P P VD+A++ + + +V FF + ++F +R
Sbjct: 176 VQYYMTTKVAFAVPRTVFVPAPNVDSAILKM-TRRKQPLVEVKDEDFFFRVSKASFLHRR 234
Query: 394 KMLRKSL-QHLSSSPEI----EKALGVAGLPVTSRPEELTLGDFVKLHNVI 257
K L +L H S E+ ++AL A + + R E L++ DF +L + +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDAL 285
>sp|B9DVT4|RSMA_STRU0 Ribosomal RNA small subunit methyltransferase A
OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rsmA PE=3
SV=1
Length = 290
Score = 123 bits (307), Expect = 4e-027
Identities = 85/291 (29%), Positives = 151/291 (51%), Gaps = 16/291 (5%)
Frame = -2
Query: 1111 DYHATLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVL 932
DY T L+ G +KS GQ+++ +++I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFL 64
Query: 931 LNLGASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDF 752
A V+A + D ++ ++ + + + +V+++D +KS ++S + F +PD
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVQVINQDILKSDLQSQIKQF------KNPDL 118
Query: 751 ALAKVVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRL-VEPALRTSEYRPINIL 575
L KVV+NLP+ I+T ++ L+ F V+++Q E A R+ EP T Y ++I
Sbjct: 119 PL-KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEP--NTKAYGSLSIA 175
Query: 574 VNFYSEPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKR 395
V +Y + F V + F P P VD+A++ ++ P +V+ FF + F +R
Sbjct: 176 VQYYMTAKVAFIVPKTVFVPAPNVDSAILKM-VRRPEPLIEVTDEDFFFRVAKVGFIHRR 234
Query: 394 KMLRKSL-QHLSSSPEIE----KALGVAGLPVTSRPEELTLGDFVKLHNVI 257
K L +L H + EI+ +AL +A + + R E LT+ + KL + +
Sbjct: 235 KTLWNNLTSHFGKTEEIKTKLTQALELADIKPSIRGEALTIPQYGKLADAL 285
>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3
SV=1
Length = 292
Score = 118 bits (295), Expect = 1e-025
Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 14/282 (4%)
Frame = -2
Query: 1099 TLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLG 920
T + LN G +KSLGQ+++++++I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 919 ASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDFALAK 740
V A + D ++ ++ + + V+H+D +K+ +R+ M + D
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVM-------DEQFQDCDEVM 123
Query: 739 VVSNLPFNISTDVVKLLLPMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYS 560
VV+NLP+ ++T ++ LL +V++LQ E A R+ + EY ++I V FY+
Sbjct: 124 VVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKP-SSKEYGSLSIAVQFYT 182
Query: 559 EPEYNFRVARENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKSFFSLVNSAFNGKRKMLRK 380
E + V + F PQP VD+AV+ L+ V FF +V ++F +RK L
Sbjct: 183 EAKTVMNVPKTVFVPQPNVDSAVIRLTLR-KEPAVAVQDAAFFFQVVKASFAQRRKTLFN 241
Query: 379 SLQH-----LSSSPEIEKALGVAGLPVTSRPEELTLGDFVKL 269
+L + + +IE+AL + + R E L++ +F L
Sbjct: 242 NLVNNLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVL 283
>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3
SV=1
Length = 273
Score = 117 bits (292), Expect = 2e-025
Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 21/274 (7%)
Frame = -2
Query: 1066 PRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPH 887
PRK GQH++ + I D++ AAAN++ D VLEIGPG G+LT+ LL ++L+++ D
Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62
Query: 886 MVDLVRERFQGSNKFKVLHEDFVKSHIRSHMLSFLETRNLSHPDFALAKVVSNLPFNIST 707
+ + + + F +L D++++ I + F + +N KVV+N+P+NI+
Sbjct: 63 LCKYMVKNYGDRPNFLLLEADYLQTDINEFLGDFPQFQN-------PRKVVANIPYNITG 115
Query: 706 DVVKLLL-----PMGDIFSHVVLLLQDEAALRLVEPALRTSEYRPINILVNFYSEPEYNF 542
+++ LL P + F +VLL+Q E RLV T + + + V + ++ E
Sbjct: 116 PILEKLLGTIDRPNSNPFESIVLLIQKEVGDRLVAHPC-TKAFGALTLRVQYLADCETVC 174
Query: 541 RVARENFFPQPKVDAAVVTFK---LKHPRDYPDVSSTKSFFSLVNSAFNGKRKMLRKSLQ 371
V + F+P+PKV++ VV + L P P + +T L+ F KRKMLR +L+
Sbjct: 175 VVPPKAFYPKPKVESVVVRLRPRPLAQPAQNPKLLAT-----LIKVGFASKRKMLRNNLK 229
Query: 370 HLSSSPEIEKALGVAGLPVTSRPEELTLGDFVKL 269
L + ++ + +R EE+ L ++ L
Sbjct: 230 SLYNPEILDPIFADLDISPQARGEEVDLLQWIAL 263
>sp|Q3ZZE6|RSMA_DEHSC Ribosomal RNA small subunit methyltransferase A
OS=Dehalococcoides sp. (strain CBDB1) GN=rsmA PE=3 SV=1
Length = 291
Score = 78 bits (190), Expect = 1e-013
Identities = 32/84 (38%), Positives = 58/84 (69%)
Frame = -2
Query: 1063 RKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHM 884
RK LGQH++++ + +++ AAA++K D V+E+GPG G+LT LL V+A++ D +
Sbjct: 31 RKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKRAGQVIAVELDDKL 90
Query: 883 VDLVRERFQGSNKFKVLHEDFVKS 812
+D + E+F+G F+++H D +K+
Sbjct: 91 IDALTEKFKGYPNFRLIHSDILKT 114
>sp|A5FS52|RSMA_DEHSB Ribosomal RNA small subunit methyltransferase A
OS=Dehalococcoides sp. (strain BAV1) GN=rsmA PE=3 SV=1
Length = 291
Score = 77 bits (187), Expect = 3e-013
Identities = 32/84 (38%), Positives = 57/84 (67%)
Frame = -2
Query: 1063 RKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHM 884
RK LGQH++++ + +++ AAA++K D V+E+GPG G LT LL V+A++ D +
Sbjct: 31 RKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKRAGQVIAVEVDDKL 90
Query: 883 VDLVRERFQGSNKFKVLHEDFVKS 812
+D + E+F+G F+++H D +K+
Sbjct: 91 IDALTEKFKGYPNFRLIHSDILKT 114
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri GN=rsmA PE=3 SV=1
Length = 278
Score = 71 bits (172), Expect = 2e-011
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = -2
Query: 1111 DYHATLKSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVL 932
+Y A L+S G PR+ LGQH+M++ +I + + AA V+E D VLEIGPG G LT L
Sbjct: 5 EYLAYLRS--KYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYL 62
Query: 931 LNLGASVLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVK 815
+ V+A++ D MV++++ + +++ DF++
Sbjct: 63 MTRAGQVIAVELDGRMVEILKRELGEAPNLEIVRADFLE 101
>sp|Q3Z9F0|RSMA_DEHE1 Ribosomal RNA small subunit methyltransferase A
OS=Dehalococcoides ethenogenes (strain 195) GN=rsmA PE=3 SV=1
Length = 291
Score = 70 bits (170), Expect = 3e-011
Identities = 29/84 (34%), Positives = 54/84 (64%)
Frame = -2
Query: 1063 RKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHM 884
RK LGQH++++ + +++ AA++K D V+E+GPG G LT L+ V+A++ D +
Sbjct: 31 RKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDDKL 90
Query: 883 VDLVRERFQGSNKFKVLHEDFVKS 812
V + E+F+ F+++H D +K+
Sbjct: 91 VTALTEKFKAYPNFRIIHSDILKT 114
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A
OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 68 bits (165), Expect = 1e-010
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = -2
Query: 1060 KSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHMV 881
KSLGQ+++++ +I D + ANV EGD ++E+GPG GSLT + SVLA++ D ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 880 DLVRERFQGSNKFKVLHEDFVK 815
+++E +V++ED +K
Sbjct: 83 PILKETLGAYPNVEVINEDVLK 104
>sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransferase A
OS=Magnetococcus sp. (strain MC-1) GN=rsmA PE=3 SV=1
Length = 279
Score = 66 bits (160), Expect = 4e-010
Identities = 33/88 (37%), Positives = 50/88 (56%)
Frame = -2
Query: 1087 LNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVL 908
L G P K GQ+++++ + ++ A A +K GD VLEIGPG GSLT LL +V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 907 AIDKDPHMVDLVRERFQGSNKFKVLHED 824
A++KD ++ L+R G ++ ED
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEED 98
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A
OS=Chlamydophila caviae GN=rsmA PE=3 SV=1
Length = 278
Score = 65 bits (158), Expect = 8e-010
Identities = 29/67 (43%), Positives = 50/67 (74%)
Frame = -2
Query: 1066 PRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPH 887
P+K L Q+++++ +I ++ A + V+ GD+VLEIGPG G+LT VL+N GA V+A++KDP
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 886 MVDLVRE 866
+ +++
Sbjct: 80 FEETLKQ 86
>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A
OS=Chlamydophila felis (strain Fe/C-56) GN=rsmA PE=3 SV=1
Length = 284
Score = 65 bits (158), Expect = 8e-010
Identities = 29/67 (43%), Positives = 50/67 (74%)
Frame = -2
Query: 1066 PRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPH 887
P+K L Q+++++ +I ++ A + V+ GD+VLEIGPG G+LT VL+N GA V+A++KDP
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 85
Query: 886 MVDLVRE 866
+ +++
Sbjct: 86 FEETLKQ 92
>sp|B3QMU5|RSMA_CHLP8 Ribosomal RNA small subunit methyltransferase A
OS=Chlorobaculum parvum (strain NCIB 8327) GN=rsmA PE=3 SV=1
Length = 274
Score = 65 bits (158), Expect = 8e-010
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = -2
Query: 1063 RKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHM 884
+K LGQ+++L+ +I ++ + +KEGD VLEIGPG G+L+ +L + S AI+KDP +
Sbjct: 14 KKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEVMPSFTAIEKDPEL 73
Query: 883 VDLVRERFQGSNKFKVLHEDFVK 815
+RE N ++ DF+K
Sbjct: 74 ARFIREEHPEIN---LIEGDFLK 93
>sp|B0TZ54|RSMA_FRAP2 Ribosomal RNA small subunit methyltransferase A
OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017)
GN=rsmA PE=3 SV=1
Length = 262
Score = 65 bits (156), Expect = 1e-009
Identities = 31/83 (37%), Positives = 53/83 (63%)
Frame = -2
Query: 1063 RKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGASVLAIDKDPHM 884
+KSLGQ+++ + +I ++ AN+K+ D VLEIGPG G+LT +L +V ++ D +
Sbjct: 8 KKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKCSDNVNVVEFDASV 67
Query: 883 VDLVRERFQGSNKFKVLHEDFVK 815
+D + + Q + KV +EDF+K
Sbjct: 68 IDTLLQNCQKYGEPKVFNEDFLK 90
>sp|O51536|RSMA_BORBU Ribosomal RNA small subunit methyltransferase A
OS=Borrelia burgdorferi GN=rsmA PE=3 SV=1
Length = 281
Score = 64 bits (154), Expect = 2e-009
Identities = 30/95 (31%), Positives = 55/95 (57%)
Frame = -2
Query: 1093 KSLNSRGRFPRKSLGQHYMLNSDINDQLAAAANVKEGDFVLEIGPGTGSLTNVLLNLGAS 914
++L R PRK GQ+Y++N I ++ + ++KE + + EIGPG G++T +LL
Sbjct: 20 QTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTEILLKKTNL 79
Query: 913 VLAIDKDPHMVDLVRERFQGSNKFKVLHEDFVKSH 809
+ A + D +++ E+F FK++ DF+K +
Sbjct: 80 LTAFEIDLKYSEILNEKFGKLKNFKLIKGDFLKKY 114
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,077,717,681
Number of Sequences: 518415
Number of Extensions: 17077717681
Number of Successful Extensions: 110867487
Number of sequences better than 0.0: 0
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