BLASTX 7.6.2
Query= UN04648 /QuerySize=776
(775 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G12775.1 | Symbols: | LOCATED IN: mitochondri... 192 3e-049
TAIR9_protein||AT1G64100.1 | Symbols: | pentatricopeptide (PPR)... 184 6e-047
TAIR9_protein||AT1G64100.2 | Symbols: | pentatricopeptide (PPR)... 184 6e-047
TAIR9_protein||AT1G12300.1 | Symbols: | pentatricopeptide (PPR)... 184 8e-047
TAIR9_protein||AT1G12620.1 | Symbols: | pentatricopeptide (PPR)... 179 2e-045
TAIR9_protein||AT1G62930.1 | Symbols: | INVOLVED IN: biological... 173 2e-043
TAIR9_protein||AT3G22470.1 | Symbols: | pentatricopeptide (PPR)... 173 2e-043
TAIR9_protein||AT1G62910.1 | Symbols: | pentatricopeptide (PPR)... 172 2e-043
TAIR9_protein||AT1G62590.1 | Symbols: | pentatricopeptide (PPR)... 171 7e-043
TAIR9_protein||AT1G63400.1 | Symbols: | pentatricopeptide (PPR)... 169 2e-042
TAIR9_protein||AT1G62670.1 | Symbols: | pentatricopeptide (PPR)... 164 7e-041
TAIR9_protein||AT1G63130.1 | Symbols: | pentatricopeptide (PPR)... 163 1e-040
TAIR9_protein||AT1G64580.1 | Symbols: | pentatricopeptide (PPR)... 162 3e-040
TAIR9_protein||AT1G63080.1 | Symbols: | pentatricopeptide (PPR)... 161 4e-040
TAIR9_protein||AT1G63150.1 | Symbols: | pentatricopeptide (PPR)... 161 7e-040
TAIR9_protein||AT1G63070.1 | Symbols: | pentatricopeptide (PPR)... 159 3e-039
TAIR9_protein||AT1G12700.1 | Symbols: | helicase domain-contain... 153 1e-037
TAIR9_protein||AT1G06580.1 | Symbols: | pentatricopeptide (PPR)... 153 2e-037
TAIR9_protein||AT1G62680.1 | Symbols: | LOCATED IN: chloroplast... 153 2e-037
>TAIR9_protein||AT1G12775.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED
IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal
differentiation and expansion stage, D bilateral stage, E expanded
cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein match is:
pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1);
Has 27792 Blast hits to 6269 proteins in 197 species: Archae - 2;
Bacteria - 23; Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0;
Other Eukaryotes - 1551 (source: NCBI BLink). | chr1:4353906-4355840
FORWARD
Length = 645
Score = 192 bits (486), Expect = 3e-049
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 11/224 (4%)
Frame = +1
Query: 91 SSSSPAVSAARLFCTRSIRDTLAKASGE---SCEAGFGGES-------LKLQSGFHEIKG 240
SS + RL T ++R L E CE GF S KL SG IK
Sbjct: 10 SSQASRFVQPRLLETGTLRIALINCPNELLFCCERGFSTFSDRNLSYRDKLSSGLVGIKA 69
Query: 241 LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 420
+DA+DLF DM++SRPLP+V+DF +L + + ++ +LV++L ++ME K I IY+ +I
Sbjct: 70 -DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSI 128
Query: 421 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 600
+I CFC C KL +A ST GKI KLG PD V FNTLL+GLC+E RVSEAL L +M E
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMG 188
Query: 601 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 732
+P ++T TL+NGLC G++ +AV L+DRM+E G QP ++TYG
Sbjct: 189 HKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
>TAIR9_protein||AT1G64100.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23791585-23793641 FORWARD
Length = 667
Score = 184 bits (466), Expect = 6e-047
Identities = 98/187 (52%), Positives = 125/187 (66%), Gaps = 1/187 (0%)
Frame = +1
Query: 76 KSSSSSSSSPAVSAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAI 255
+ ++ S +++ RL R + + K+ + F GE LKL+SG H K L+DAI
Sbjct: 33 EKKNTKSGGVRLNSRRLIHGR-VAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKSLDDAI 91
Query: 256 DLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 435
D F M+RSRP + VD K++GV VRM RPD+ ISLY+KME ++I +IYSF ILIKCF
Sbjct: 92 DFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCF 151
Query: 436 CSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 615
C C KL F+LSTFGK+TKLG PDVVTFNTLLHGLC+EDR+SEAL LF M ET V
Sbjct: 152 CDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAV 211
Query: 616 VTFTTLM 636
F ++
Sbjct: 212 ALFDQMV 218
>TAIR9_protein||AT1G64100.2 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23791585-23795563 FORWARD
Length = 807
Score = 184 bits (466), Expect = 6e-047
Identities = 98/187 (52%), Positives = 125/187 (66%), Gaps = 1/187 (0%)
Frame = +1
Query: 76 KSSSSSSSSPAVSAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAI 255
+ ++ S +++ RL R + + K+ + F GE LKL+SG H K L+DAI
Sbjct: 33 EKKNTKSGGVRLNSRRLIHGR-VAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKSLDDAI 91
Query: 256 DLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 435
D F M+RSRP + VD K++GV VRM RPD+ ISLY+KME ++I +IYSF ILIKCF
Sbjct: 92 DFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCF 151
Query: 436 CSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 615
C C KL F+LSTFGK+TKLG PDVVTFNTLLHGLC+EDR+SEAL LF M ET V
Sbjct: 152 CDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAV 211
Query: 616 VTFTTLM 636
F ++
Sbjct: 212 ALFDQMV 218
>TAIR9_protein||AT1G12300.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:4184163-4186076 REVERSE
Length = 638
Score = 184 bits (465), Expect = 8e-047
Identities = 97/214 (45%), Positives = 138/214 (64%), Gaps = 11/214 (5%)
Frame = +1
Query: 121 RLFCTRSIRDTLAKASGE---SCEAGFGGES-------LKLQSGFHEIKGLEDAIDLFSD 270
RL T ++R L E CE GF S +L+SG +IK +DAIDLF D
Sbjct: 20 RLLETGTLRIALINCPNELSFCCERGFSAFSDRNLSYRERLRSGLVDIKA-DDAIDLFRD 78
Query: 271 MLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSK 450
M+ SRPLP+V+DF +L + + ++ DLV++L ++ME K I ++Y+ +I+I CFC C K
Sbjct: 79 MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRK 138
Query: 451 LPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 630
L A S GKI KLG P+ +TF+TL++GLC+E RVSEAL L +M E +P+++T T
Sbjct: 139 LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINT 198
Query: 631 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 732
L+NGLC G+ EA+ L+D+M+E G QP +TYG
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYG 232
>TAIR9_protein||AT1G12620.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:4294883-4296748 REVERSE
Length = 622
Score = 179 bits (454), Expect = 2e-045
Identities = 87/175 (49%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 208 KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 387
+L+SG +IK +DA+DLF +M RSRP P ++DF +L VV R ++ DLV+ L ++ME K
Sbjct: 43 RLRSGIVDIKE-DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELK 101
Query: 388 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 567
I ++Y+ +I+I C C C KL A S GKI KLG PD VTF+TL++GLC+E RVSEA
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161
Query: 568 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 732
L L +M E +P ++T L+NGLC G++ +AV L+DRM+E G QP ++TYG
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYG 216
>TAIR9_protein||AT1G62930.1 | Symbols: | INVOLVED IN: biological_process
unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth
stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein match is:
pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1);
Has 29147 Blast hits to 6292 proteins in 192 species: Archae - 8;
Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants - 25291; Viruses -
0; Other Eukaryotes - 1710 (source: NCBI BLink). |
chr1:23306534-23308423 FORWARD
Length = 630
Score = 173 bits (436), Expect = 2e-043
Identities = 86/173 (49%), Positives = 119/173 (68%)
Frame = +1
Query: 241 LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 420
L+DA+DLF +M++SRPLPS+V+F KL+ + +M + DLVISL ++M+ +I D+YS+ I
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 421 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 600
LI CFC S+LP AL+ GK+ KLG PD+VT ++LL+G C R+SEA+ L QMF
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 601 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGQS*MGCVRR 759
+PN VTF TL++GL + EAVAL+DRM+ G QP TYG G +R
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 233
>TAIR9_protein||AT3G22470.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr3:7966066-7967925 REVERSE
Length = 620
Score = 173 bits (436), Expect = 2e-043
Identities = 85/175 (48%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 208 KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 387
+L++G +IK + DAIDLF M++SRPLP+ +DF +L V R ++ DLV+ + ME
Sbjct: 41 RLRNGIVDIK-VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 99
Query: 388 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 567
I D+Y+ TI+I C+C KL FA S G+ KLG PD +TF+TL++G C+E RVSEA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 568 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 732
+ L +M E RP++VT +TL+NGLC +GR+ EA+ L+DRM+E G QP ++TYG
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 214
>TAIR9_protein||AT1G62910.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23299060-23303162 FORWARD
Length = 1134
Score = 172 bits (435), Expect = 2e-043
Identities = 90/198 (45%), Positives = 130/198 (65%), Gaps = 2/198 (1%)
Frame = +1
Query: 166 SGESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMER 345
S ESC + + L++G +I+ L+DAI LF M +SRP PS+++F KL+ + +M +
Sbjct: 641 SSESCGESYDYREV-LRTGLSDIE-LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNK 698
Query: 346 PDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNT 525
DLVIS +KME I ++Y++ ILI CFC CS+L AL+ GK+ KLG PD+VT N+
Sbjct: 699 FDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNS 758
Query: 526 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 705
LL+G C +R+S+A+ L QM E +P+ VTFTTL++GL + EAVAL+DRM++ G
Sbjct: 759 LLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRG 818
Query: 706 LQPTQITYGQS*MGCVRR 759
QP +TYG G +R
Sbjct: 819 CQPDLVTYGAVVNGLCKR 836
Score = 161 bits (405), Expect = 7e-040
Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 8/203 (3%)
Frame = +1
Query: 151 TLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 330
+ A ASG+ E L++ +I ++DA+DLF DM++SRP PS+V+F KL+ V
Sbjct: 42 SFASASGDYREI--------LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAV 93
Query: 331 VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDV 510
+M + +LVISL ++M+ I D+Y+++I I CFC S+L AL+ K+ KLG PD+
Sbjct: 94 AKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDI 153
Query: 511 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 690
VT ++LL+G C R+S+A+ L QM E +P+ TFTTL++GL + EAVAL+D+
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213
Query: 691 MMEDGLQPTQITYGQS*MGCVRR 759
M++ G QP +TYG G +R
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKR 236
>TAIR9_protein||AT1G62590.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23177294-23179198 REVERSE
Length = 635
Score = 171 bits (431), Expect = 7e-043
Identities = 88/197 (44%), Positives = 132/197 (67%), Gaps = 1/197 (0%)
Frame = +1
Query: 169 GESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP 348
G + +G G L++G H++K L+DAI LF M++SRPLPS+V+F KL+ + +M++
Sbjct: 43 GRAFSSGSGDYREILRNGLHDMK-LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF 101
Query: 349 DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 528
D+VISL +KM+R +I +Y++ ILI CFC S++ AL+ GK+ KLG P +VT ++L
Sbjct: 102 DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSL 161
Query: 529 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 708
L+G C R+S+A+ L QM E RP+ +TFTTL++GL + EAVAL+DRM++ G
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221
Query: 709 QPTQITYGQS*MGCVRR 759
QP +TYG G +R
Sbjct: 222 QPNLVTYGVVVNGLCKR 238
>TAIR9_protein||AT1G63400.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23507320-23509053 FORWARD
Length = 578
Score = 169 bits (427), Expect = 2e-042
Identities = 88/197 (44%), Positives = 130/197 (65%), Gaps = 1/197 (0%)
Frame = +1
Query: 169 GESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP 348
G + +G G L++G H +K L+DAI LF M++SRPLPS+ +F KL+ + +M++
Sbjct: 43 GRAFSSGSGDYREILRNGLHSMK-LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKF 101
Query: 349 DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 528
DLVISL +KM+R I ++Y++ ILI CFC S++ AL+ GK+ KLG P +VT ++L
Sbjct: 102 DLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSL 161
Query: 529 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 708
L+G C R+S+A+ L QM E RP+ +TFTTL++GL + EAVAL+DRM++ G
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221
Query: 709 QPTQITYGQS*MGCVRR 759
QP +TYG G +R
Sbjct: 222 QPNLVTYGVVVNGLCKR 238
>TAIR9_protein||AT1G62670.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23204773-23206665 REVERSE
Length = 631
Score = 164 bits (414), Expect = 7e-041
Identities = 82/182 (45%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Frame = +1
Query: 214 QSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 393
++G E+K L+DA+ LF +M++SRP PS+++F KL+ + +M + D+VISL ++M+ I
Sbjct: 54 RNGLSELK-LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI 112
Query: 394 RCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALN 573
+ Y+++ILI CFC S+LP AL+ GK+ KLG P++VT ++LL+G C R+SEA+
Sbjct: 113 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172
Query: 574 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGQS*MGCV 753
L QMF T +PN VTF TL++GL + EA+AL+DRM+ G QP +TYG G
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 754 RR 759
+R
Sbjct: 233 KR 234
>TAIR9_protein||AT1G63130.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23412854-23414746 FORWARD
Length = 631
Score = 163 bits (412), Expect = 1e-040
Identities = 79/164 (48%), Positives = 116/164 (70%)
Frame = +1
Query: 241 LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 420
L+DA++LF DM++SRP PS+V+F KL+ + +M + DLVISL ++M+ I ++Y+++I
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 421 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 600
LI CFC S+L AL+ K+ KLG PD+VT N+LL+G C +R+S+A++L QM E
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 601 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 732
+P+ TF TL++GL R R EAVAL+DRM+ G QP +TYG
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
>TAIR9_protein||AT1G64580.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23985078-23988740 REVERSE
Length = 1053
Score = 162 bits (408), Expect = 3e-040
Identities = 83/187 (44%), Positives = 115/187 (61%)
Frame = +1
Query: 169 GESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP 348
G + F KL++GF EDA LF +M+ S+PLPS+VDF +L+ + R
Sbjct: 28 GGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRY 87
Query: 349 DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 528
+ VI QKME I D+YSFTILI CFC CS+L FALS GK+ KLG P +VTF +L
Sbjct: 88 ETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSL 147
Query: 529 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 708
LHG C+ +R+ +A +L M ++ PNVV + TL++GLC+ G + A+ LL+ M + GL
Sbjct: 148 LHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGL 207
Query: 709 QPTQITY 729
+TY
Sbjct: 208 GADVVTY 214
>TAIR9_protein||AT1G63080.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23388884-23390728 REVERSE
Length = 615
Score = 161 bits (407), Expect = 4e-040
Identities = 79/173 (45%), Positives = 119/173 (68%)
Frame = +1
Query: 241 LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 420
L++A+DLF +M++SRP PS+V+F KL+ + +M++ DLVIS +KME + ++Y++ I
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 421 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 600
+I C C S+L FAL+ GK+ KLG P +VT N+LL+G C +R+SEA+ L QM E
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 601 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGQS*MGCVRR 759
+P+ VTFTTL++GL + + EAVAL++RM+ G QP +TYG G +R
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
>TAIR9_protein||AT1G63150.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23419399-23421288 FORWARD
Length = 630
Score = 161 bits (405), Expect = 7e-040
Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 8/203 (3%)
Frame = +1
Query: 151 TLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 330
+ A ASG+ E L++ +I ++DA+DLF DM++SRP PS+V+F KL+ V
Sbjct: 42 SFASASGDYREI--------LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAV 93
Query: 331 VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDV 510
+M + +LVISL ++M+ I D+Y+++I I CFC S+L AL+ K+ KLG PD+
Sbjct: 94 AKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDI 153
Query: 511 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 690
VT ++LL+G C R+S+A+ L QM E +P+ TFTTL++GL + EAVAL+D+
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213
Query: 691 MMEDGLQPTQITYGQS*MGCVRR 759
M++ G QP +TYG G +R
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKR 236
>TAIR9_protein||AT1G63070.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:23385324-23387167 REVERSE
Length = 591
Score = 159 bits (400), Expect = 3e-039
Identities = 86/203 (42%), Positives = 129/203 (63%), Gaps = 7/203 (3%)
Frame = +1
Query: 151 TLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 330
+ A AS + C + L+ ++K L+DAI LF DM++SRP PS+V+F KL+ +
Sbjct: 33 SFAGASSDDCRENLSRKVLQ------DLK-LDDAIGLFGDMVKSRPFPSIVEFSKLLSAI 85
Query: 331 VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDV 510
+M + DLVISL ++M+ I ++Y+++I I FC S+L AL+ GK+ KLG P +
Sbjct: 86 AKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSI 145
Query: 511 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 690
VT N+LL+G C +R+SEA+ L QM E +P+ VTFTTL++GL + + EAVAL++R
Sbjct: 146 VTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 205
Query: 691 MMEDGLQPTQITYGQS*MGCVRR 759
M+ G QP +TYG G +R
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKR 228
>TAIR9_protein||AT1G12700.1 | Symbols: | helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein |
chr1:4322913-4326197 REVERSE
Length = 829
Score = 153 bits (386), Expect = 1e-037
Identities = 89/212 (41%), Positives = 126/212 (59%), Gaps = 11/212 (5%)
Frame = +1
Query: 124 LFCTRSIR-DTLAKASG--ESCEAGFGGES-------LKLQSGFHEIKGLEDAIDLFSDM 273
L T S+R D L S SCE F S +L+SG +IK +DAI LF +M
Sbjct: 11 LLKTGSLRTDLLCTISSFFSSCERDFSSISNGNVCFRERLRSGIVDIK-KDDAIALFQEM 69
Query: 274 LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 453
+RSRPLPS+VDF + + R ++ +LV+ +++E I +IY+ I+I CFC C K
Sbjct: 70 IRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 129
Query: 454 PFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTL 633
FA S GK+ KLG PD TFNTL+ GL +E +VSEA+ L +M E C+P+VVT+ ++
Sbjct: 130 CFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSI 189
Query: 634 MNGLCREGRIVEAVALLDRMMEDGLQPTQITY 729
+NG+CR G A+ LL +M E ++ TY
Sbjct: 190 VNGICRSGDTSLALDLLRKMEERNVKADVFTY 221
>TAIR9_protein||AT1G06580.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:2014440-2015942 REVERSE
Length = 501
Score = 153 bits (385), Expect = 2e-037
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 208 KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 387
+L+SG H IK DA+ LF DM S PLPS+VDF +L+ + ++ + + VISL++ +E
Sbjct: 50 RLRSGLHSIK-FNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEML 108
Query: 388 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 567
I D+YSFT LI CFC C++L ALS GK+ KLG P +VTF +L++G C +R EA
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 568 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY 729
++L Q+ PNVV + T+++ LC +G++ A+ +L M + G++P +TY
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTY 222
>TAIR9_protein||AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo
stage, petal differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide (PPR)
repeat-containing protein (TAIR:AT1G63130.1); Has 26421 Blast hits to
6237 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 845;
Fungi - 755; Plants - 23373; Viruses - 0; Other Eukaryotes - 1421
(source: NCBI BLink). | chr1:23208247-23209893 REVERSE
Length = 549
Score = 153 bits (384), Expect = 2e-037
Identities = 71/163 (43%), Positives = 111/163 (68%)
Frame = +1
Query: 241 LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 420
L DAIDLFSDM++SRP PS+VDF +L+ +V++++ D+VISL +KME IR D+Y+F I
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 421 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 600
+I CFC C ++ ALS GK+ KLG PD VT +L++G C +RVS+A++L +M E
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 601 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY 729
+P++V + +++ LC+ R+ +A + G++P +TY
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,004,268,149
Number of Sequences: 33410
Number of Extensions: 3004268149
Number of Successful Extensions: 110974021
Number of sequences better than 0.0: 0
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