BLASTX 7.6.2
Query= UN04823 /QuerySize=1100
(1099 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G01220.1 | Symbols: | FUNCTIONS IN: molecular... 562 2e-160
TAIR9_protein||AT4G01220.2 | Symbols: | FUNCTIONS IN: molecular... 518 4e-147
TAIR9_protein||AT4G01770.1 | Symbols: RGXT1 | RGXT1 (rhamnogalac... 474 6e-134
TAIR9_protein||AT1G56550.1 | Symbols: | UDP-xylosyltransferase ... 429 2e-120
TAIR9_protein||AT4G01750.1 | Symbols: RGXT2 | RGXT2 (rhamnogalac... 405 4e-113
>TAIR9_protein||AT4G01220.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon
(InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1
(rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase
(TAIR:AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses
- 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr4:513431-515648
REVERSE
Length = 361
Score = 562 bits (1447), Expect = 2e-160
Identities = 274/316 (86%), Positives = 289/316 (91%), Gaps = 8/316 (2%)
Frame = +1
Query: 169 MAQQQYLHQRPIK----NPFSSSPLSNSSLSNRPISLLSRNGLLLLLALLVILGVFLPWA 336
MAQQ++LHQRPI+ NPFSSSPLS SS+SNRPISLLSRNGLLLLLALLVILGVFLPWA
Sbjct: 1 MAQQKFLHQRPIQNPFTNPFSSSPLSTSSISNRPISLLSRNGLLLLLALLVILGVFLPWA 60
Query: 337 GSPF---PNTFSSSSHSKWRDYSLAQAVSFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ 507
GSP PN S S SKWRDYSL QAV FVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ
Sbjct: 61 GSPLFPSPNKL-SPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ 119
Query: 508 NHQDKVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTSRRPQHLLQ 687
HQD+VLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFT+RRPQHLL+
Sbjct: 120 KHQDQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLE 179
Query: 688 IVELGYSVMYNDVDMVWLQDPFNYLEGKHDAYFEDDITAIKPLDHSHDLPPPGKKGRPYI 867
I+ELGY+VMYNDVDMVWLQDPF YLEGKHDAYF DD+TAIKPLDHSHDLPPPGKKGR YI
Sbjct: 180 ILELGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRTYI 239
Query: 868 CSCMIFLRPTSAAKLLLKKWIEEMRDQPWSREKKANDQPAFNWALMKTAHQVDLYLLPQA 1047
CSCMIFLRPT+ AKLL+KKWIEE+ QPWSR KKANDQP FNWAL KTA+QVD+YLL QA
Sbjct: 240 CSCMIFLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVDMYLLSQA 299
Query: 1048 AFPTGGLYFKNKTWVK 1095
AFPTGGLYFKNKTWVK
Sbjct: 300 AFPTGGLYFKNKTWVK 315
>TAIR9_protein||AT4G01220.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon
(InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1
(rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase
(TAIR:AT4G01770.1); Has 153 Blast hits to 150 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:514146-515648
REVERSE
Length = 300
Score = 518 bits (1332), Expect = 4e-147
Identities = 255/300 (85%), Positives = 271/300 (90%), Gaps = 9/300 (3%)
Frame = +1
Query: 169 MAQQQYLHQRPIK----NPFSSSPLSNSSLSNRPISLLSRNGLLLLLALLVILGVFLPWA 336
MAQQ++LHQRPI+ NPFSSSPLS SS+SNRPISLLSRNGLLLLLALLVILGVFLPWA
Sbjct: 1 MAQQKFLHQRPIQNPFTNPFSSSPLSTSSISNRPISLLSRNGLLLLLALLVILGVFLPWA 60
Query: 337 GSPF---PNTFSSSSHSKWRDYSLAQAVSFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ 507
GSP PN S S SKWRDYSL QAV FVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ
Sbjct: 61 GSPLFPSPNKL-SPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQ 119
Query: 508 NHQDKVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTSRRPQHLLQ 687
HQD+VLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFT+RRPQHLL+
Sbjct: 120 KHQDQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLE 179
Query: 688 IVELGYSVMYNDVDMVWLQDPFNYLEGKHDAYFEDDITAIKPLDHSHDLPPPGKKGRPYI 867
I+ELGY+VMYNDVDMVWLQDPF YLEGKHDAYF DD+TAIKPLDHSHDLPPPGKKGR YI
Sbjct: 180 ILELGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRTYI 239
Query: 868 CSCMIFLRPTSAAKLLLKKWIEEMRDQPWSREKKANDQPAFNWALMKTAHQV-DLYLLPQ 1044
CSCMIFLRPT+ AKLL+KKWIEE+ QPWSR KKANDQP FNWAL KTA+QV +L+PQ
Sbjct: 240 CSCMIFLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVCSFFLVPQ 299
>TAIR9_protein||AT4G01770.1 | Symbols: RGXT1 | RGXT1 (rhamnogalacturonan
xylosyltransferase 1); UDP-xylosyltransferase | chr4:764564-766596
FORWARD
Length = 362
Score = 474 bits (1218), Expect = 6e-134
Identities = 239/319 (74%), Positives = 266/319 (83%), Gaps = 13/319 (4%)
Frame = +1
Query: 169 MAQQQYLHQRPIKNPFSSSPLSNSSLSNRPISLLSRNG-LLLLLALLVILGVFLPWAGSP 345
M Q+Q++ + ++ FSSSP S SS+S+RPISLLSRNG LLLLLAL+++LGV LPW GSP
Sbjct: 1 MEQKQHILK---QSTFSSSPSSYSSISDRPISLLSRNGLLLLLLALVLLLGVLLPWPGSP 57
Query: 346 ---FPNTFSS----SSHSKWRDYSLAQAVSFVAKNGTVIVCAVSYPYLPFLNNWLISVSR 504
FPN SS S SKWRDY+LAQA FVAKNGTVIVCAVS P+LPFLNNWLISVSR
Sbjct: 58 LFLFPNRLSSSLSPSPQSKWRDYTLAQAARFVAKNGTVIVCAVSSPFLPFLNNWLISVSR 117
Query: 505 QNHQDKVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTSRRPQHLL 684
Q HQDKVLVIAEDY TLYKVNEKWPGHAVLIPPALDS+TA FGSQGFFNFT+RRPQHLL
Sbjct: 118 QKHQDKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAFSFGSQGFFNFTARRPQHLL 177
Query: 685 QIVELGYSVMYNDVDMVWLQDPFNYLEGKHDAYFEDDITAIKPLDHSHDLPPPGKKGRPY 864
QI+ELGY+VMYNDVDMVWLQDPF YLEG HDAYF DD+ IKPL+HSHDLP P + G Y
Sbjct: 178 QILELGYNVMYNDVDMVWLQDPFLYLEGSHDAYFTDDMPQIKPLNHSHDLPHPDRNGETY 237
Query: 865 ICSCMIFLRPTSAAKLLLKKWIEEMRDQPWSR--EKKANDQPAFNWALMKTAHQVDLYLL 1038
ICSCMI+LRPT+ AKLL+KKW EE++ Q WS KANDQPAFN AL KTAHQVDLYLL
Sbjct: 238 ICSCMIYLRPTNGAKLLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQVDLYLL 297
Query: 1039 PQAAFPTGGLYFKNKTWVK 1095
Q AFPTGGLYFKN+ WV+
Sbjct: 298 SQVAFPTGGLYFKNEAWVQ 316
>TAIR9_protein||AT1G56550.1 | Symbols: | UDP-xylosyltransferase |
chr1:21185836-21188070 REVERSE
Length = 384
Score = 429 bits (1101), Expect = 2e-120
Identities = 219/306 (71%), Positives = 247/306 (80%), Gaps = 19/306 (6%)
Frame = +1
Query: 217 SSSPLSNS--SLSNRPISLLSRNGLLLLLALLVILGVFLPWAGSP---FPNTFSSS---- 369
S P+SN SL NR + LLLLLAL VILGVFLP S FPNT SSS
Sbjct: 5 SQRPISNRHISLLNRNGLI-----LLLLLALFVILGVFLPLTKSSLFMFPNTTSSSLSPS 59
Query: 370 ---SHSKWRDYSLAQAVSFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQNHQDKVLVIAE 540
S S WRDYSLAQAV FVAKN TVIVCAVSYP+LPFLNNWLIS+SRQ HQ+KVLVIAE
Sbjct: 60 SSLSVSDWRDYSLAQAVKFVAKNETVIVCAVSYPFLPFLNNWLISISRQKHQEKVLVIAE 119
Query: 541 DYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTSRRPQHLLQIVELGYSVMYN 720
DYATLYKVNEKWPGHAVLIPPALD Q+AHKFGSQGFFN TSRRPQHLL I+ELGY+VMYN
Sbjct: 120 DYATLYKVNEKWPGHAVLIPPALDPQSAHKFGSQGFFNLTSRRPQHLLNILELGYNVMYN 179
Query: 721 DVDMVWLQDPFNYLEGKHDAYFEDDITAIKPLDHSHDLPPPGKKGRPYICSCMIFLRPTS 900
DVDMVWLQDPF+YL+G +DAYF DD+ AIKPL+HSHDLPP + G Y+CSCMIFLR T
Sbjct: 180 DVDMVWLQDPFDYLQGSYDAYFMDDMIAIKPLNHSHDLPPLSRSGVTYVCSCMIFLRSTD 239
Query: 901 AAKLLLKKWIEEMRDQPW--SREKKANDQPAFNWALMKTAHQVDLYLLPQAAFPTGGLYF 1074
KLL+K W+EE++ QPW ++ KK +DQPAFN AL KTA+QV +YLLPQ+AFP+GGLYF
Sbjct: 240 GGKLLMKTWVEEIQAQPWNNTQAKKPHDQPAFNRALHKTANQVKVYLLPQSAFPSGGLYF 299
Query: 1075 KNKTWV 1092
+N+TWV
Sbjct: 300 RNETWV 305
>TAIR9_protein||AT4G01750.1 | Symbols: RGXT2 | RGXT2 (rhamnogalacturonan
xylosyltransferase 2); UDP-xylosyltransferase | chr4:756534-758364
FORWARD
Length = 368
Score = 405 bits (1039), Expect = 4e-113
Identities = 191/252 (75%), Positives = 214/252 (84%), Gaps = 2/252 (0%)
Frame = +1
Query: 346 FPNTFSSSSHSKWRDYSLAQAVSFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQNHQDKV 525
+ ++ S + S+WR+Y+LAQA FVA NGTVIVCAVS P+LPFLNNWLISVSRQ HQ+KV
Sbjct: 71 YASSLSPHAKSEWRNYTLAQAAKFVATNGTVIVCAVSSPFLPFLNNWLISVSRQKHQEKV 130
Query: 526 LVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTSRRPQHLLQIVELGY 705
LVIAEDY TLYKVNEKWPGHAVLIPPALDS+TA+ FGSQGFFNFT+RRPQHLLQI+ELGY
Sbjct: 131 LVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAYSFGSQGFFNFTARRPQHLLQILELGY 190
Query: 706 SVMYNDVDMVWLQDPFNYLEGKHDAYFEDDITAIKPLDHSHDLPPPGKKGRPYICSCMIF 885
+VMYNDVDMVWLQDPF YLEG HDAYF DD+ IKPL+HSHDLP P + G YICSCMI+
Sbjct: 191 NVMYNDVDMVWLQDPFQYLEGSHDAYFTDDMPQIKPLNHSHDLPAPDQNGETYICSCMIY 250
Query: 886 LRPTSAAKLLLKKWIEEMRDQPWSR--EKKANDQPAFNWALMKTAHQVDLYLLPQAAFPT 1059
LRPT+ AKLL+KKW EE++ Q WS KANDQPAFN AL KTAHQVDLYLL Q AFPT
Sbjct: 251 LRPTNGAKLLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQVDLYLLSQVAFPT 310
Query: 1060 GGLYFKNKTWVK 1095
GGLYF + WVK
Sbjct: 311 GGLYFNDAAWVK 322
Score = 82 bits (202), Expect = 4e-016
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 7/72 (9%)
Frame = +1
Query: 175 QQQYLHQRPIKNPFSSSPLSNSSLSNRPISLLSRNGLLL-LLALLVILGVFLPWAGSP-- 345
+QQ LHQ + PFSSSP S SS+SNRPI LLSRNGLLL LLAL ++LGVFLPW GSP
Sbjct: 4 KQQTLHQ---QRPFSSSPRSYSSISNRPIFLLSRNGLLLVLLALFLLLGVFLPWPGSPLL 60
Query: 346 -FPNTFSSSSHS 378
FPN SS S++
Sbjct: 61 LFPNKVSSPSYA 72
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,140,013,067
Number of Sequences: 33410
Number of Extensions: 3140013067
Number of Successful Extensions: 116423344
Number of sequences better than 0.0: 0
|
