BLASTX 7.6.2
Query= UN06484 /QuerySize=979
(978 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 105 5e-023
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 94 9e-020
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 69 5e-012
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 64 1e-010
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 62 5e-010
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 60 1e-009
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 57 1e-008
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 105 bits (261), Expect = 5e-023
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Frame = +1
Query: 205 VFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIF--FLAEGAVDKA 378
+ V GYDT L + AL HF+SCG IT I + + + + +++ F EGA DKA
Sbjct: 26 ICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKA 85
Query: 379 LQLSGSDVGGWTAIVEPFPFLKYEGRSITVNVTGYDISRSEIDFKSAIRQHFSSCGEISH 558
LQLSG+DVGGWT IV+P P + T++V GYD S + + + +HF SCGEI H
Sbjct: 86 LQLSGTDVGGWTVIVKPKPKHEPPSPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRH 145
Query: 559 FKIS--------KKVASAKFDVDGEDAQDKVMELDESIMCG 657
+ K VA + ++GE A+DK ++L + + G
Sbjct: 146 VYVPTDYERGVLKSVAFLR--IEGEGAEDKALQLSGTDVVG 184
Score = 63 bits (152), Expect = 2e-010
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 205 VFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFL--AEGAVDKA 378
+ V GYDT L ++ L HF SCG I + + E V +++ F EGA DKA
Sbjct: 115 ISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKA 174
Query: 379 LQLSGSDVGGWTAIVEP 429
LQLSG+DV GWT IV+P
Sbjct: 175 LQLSGTDVVGWTVIVKP 191
Score = 60 bits (145), Expect = 1e-009
Identities = 40/100 (40%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +1
Query: 196 VGRVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFLAEGAVDK 375
+ R VTGYD LP D+ AL HFSSCG I + + L S A + E VDK
Sbjct: 212 IHRFRVTGYDASLPEIDIQMALCKHFSSCGEIWQVTV------LSSTAFVSLRGERCVDK 265
Query: 376 ALQLSGSDVGGWTAIVE----PFPFLKYEGRSITVNVTGY 483
AL+LSG ++G T +V P P L R TGY
Sbjct: 266 ALELSGCNMGERTLVVNEPVVPQPELLKRKRVRHCTTTGY 305
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 94 bits (233), Expect = 9e-020
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +1
Query: 178 KFKTRDVGRVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQT-DEGLVSRAIIFFL 354
K + D+ R+ VTGYD +LP + V+ L+ FS CG ITD+ I +T + L S A I+F+
Sbjct: 16 KIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIPETRNSSLWSHAFIYFV 75
Query: 355 AEGAVDKALQLSGSDVGGWTAIVEPFPFLKYEGRSITVNVTGYD 486
EG DKALQL+GSD+GGWT E PF K E V + G D
Sbjct: 76 GEGTADKALQLNGSDMGGWTVDAEADPFPKEEDNFSIVYLLGED 119
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 69 bits (166), Expect = 5e-012
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +1
Query: 202 RVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILI-RQTDEGLV-SRAIIFFLAEGAVDK 375
++ V GYDT+L V L HF+SCG+IT I + R + G++ S A + EG +K
Sbjct: 30 KISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGGEEK 89
Query: 376 ALQLSGSDVGGWTAIVEP 429
AL LSG+D GGWTAIV+P
Sbjct: 90 ALLLSGTDAGGWTAIVKP 107
Score = 62 bits (150), Expect = 4e-010
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +1
Query: 202 RVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFLAEGAVDKAL 381
RV VTGYDT +P D+ AL HFSSCG +T +++ + G I+ E DKAL
Sbjct: 129 RVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVVLPSGSG-----SIYLQGERCEDKAL 183
Query: 382 QLSGSDVGGWTAIVE 426
QL+G +GG +VE
Sbjct: 184 QLNGCKMGGMNLVVE 198
Score = 48 bits (113), Expect = 7e-006
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 466 VNVTGYDISRSEIDFKSAIRQHFSSCGEISHFKISKKVASAKFDVDGEDAQDKVMELDES 645
V VTGYD +ID + A+ +HFSSCGE++ + S + GE +DK ++L+
Sbjct: 130 VRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVVLPS-GSGSIYLQGERCEDKALQLNGC 188
Query: 646 IMCGSKIHVDVI 681
M G + V+ +
Sbjct: 189 KMGGMNLVVESV 200
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 64 bits (155), Expect = 1e-010
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 202 RVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFL-----AEGA 366
++ V GYDT + + AL HF+SCG+I DI + + + + ++ +F + E
Sbjct: 22 KISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFKKRILKSPLFIIFHAKEGESP 81
Query: 367 VDKALQLSGSDVGGWTAIVEPFP 435
VDKAL+LSG+DVGGW +V+ P
Sbjct: 82 VDKALELSGTDVGGWNVVVKSLP 104
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 62 bits (149), Expect = 5e-010
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 193 DVGRVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILI--RQTDEGLVSRAIIFFLAEGA 366
DVGR+ VTGYDT LP DD+ AL HFSSCG I +I I + + + + L
Sbjct: 21 DVGRIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIYIPLKFDETNTILNRFWWLLPPPF 80
Query: 367 VDKALQLSGSDVGGWTAIVEPFPFLKYEGRSITVNVTGYDIS 492
+ + + +VGGW VE +P+ + S+ V G D++
Sbjct: 81 LSNS--SAQVNVGGWNVSVEAYPYPAHANDSVRAVVHGKDVA 120
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 60 bits (145), Expect = 1e-009
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 193 DVGRVFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFLAEGAVD 372
D ++FV G+D L DD+ LR HFSSCG I ++ + + S+ I + +
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE 458
Query: 373 KALQLSGSDVGG--WTAIVEPFP 435
KAL+L+GSD+GG + + EP P
Sbjct: 459 KALELNGSDMGGGFYLVVDEPRP 481
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 57 bits (137), Expect = 1e-008
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 205 VFVTGYDTKLPHDDVDGALRNHFSSCGRITDILIRQTDEGLVSRAIIFFLAEGAVDKALQ 384
++V G+ + L D++ LR+HFS CG +T + + E SR + D+ALQ
Sbjct: 481 IYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQ 540
Query: 385 LSGSDVGGWTAIVEPF-PFLKYEGRS 459
LSGS++GG VE P EGRS
Sbjct: 541 LSGSEIGGGNIHVEESRPRDSDEGRS 566
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,955,443,530
Number of Sequences: 33410
Number of Extensions: 3955443530
Number of Successful Extensions: 152801959
Number of sequences better than 0.0: 0
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