BLASTX 7.6.2
Query= UN06578 /QuerySize=1065
(1064 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G46840.1 | Symbols: | RNA recognition motif (... 324 6e-089
TAIR9_protein||AT5G46840.2 | Symbols: | RNA recognition motif (... 324 6e-089
>TAIR9_protein||AT5G46840.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:19005651-19007609 FORWARD
Length = 502
Score = 324 bits (830), Expect = 6e-089
Identities = 168/190 (88%), Positives = 176/190 (92%), Gaps = 2/190 (1%)
Frame = +1
Query: 4 TRKGAIMLKQINEKASSVHAYVVFETEQSAEASLALNMSLIDGNHVRVDRACPPRKKLKG 183
TRKGAIMLKQINEKASSVHAYVVFETEQSA ASLA NMSLIDGNHVRVDRACPPRKK KG
Sbjct: 213 TRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKG 272
Query: 184 EGQDTLLYDSKRTVFIGNLPFDVKDEEVYQLFTGKSNLENNLEAVRVIRDPHLNIGKGIA 363
DT LYD KRTVF+GNLPFDVKDEEVYQLFTGKSNLEN++EAVRVIRDPHLNIGKGIA
Sbjct: 273 H-DDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIA 331
Query: 364 YVLFKTKEAANLVIKKGYLRLRERELRISRAKPDATPSKRKTNPSEAYSPAGKRQHKDKV 543
YVLFKT+EAANLV+KKGYL+LRERELRISR KPD TPSKRK+NPSEAYSPA KR KDKV
Sbjct: 332 YVLFKTREAANLVLKKGYLKLRERELRISRVKPD-TPSKRKSNPSEAYSPAQKRLQKDKV 390
Query: 544 VTPTATGKAD 573
VTPT TGKA+
Sbjct: 391 VTPTPTGKAN 400
Score = 153 bits (385), Expect = 2e-037
Identities = 83/108 (76%), Positives = 92/108 (85%), Gaps = 4/108 (3%)
Frame = +2
Query: 563 GRLTLSYQGVKASKSGDDDKKKPYQKSPAQSKMRPRSSSSSEGNKGGADSKSAVKQRSQK 742
G+ LSYQGV+ASKSG DDKK PYQKS AQ+KMRPR SSS++ K G + SA K+RSQK
Sbjct: 397 GKANLSYQGVRASKSG-DDKKTPYQKSSAQTKMRPRGSSSNDNKKSG--NNSASKERSQK 453
Query: 743 RPAVAARKAKANAKVGSKESGGKKFAGTKRKQESRTPESFFKKKKAKR 886
RPAVAARKAKANAK GSKESGGK+FAGTKRKQE+RTPESF KKKK KR
Sbjct: 454 RPAVAARKAKANAK-GSKESGGKRFAGTKRKQENRTPESFSKKKKTKR 500
>TAIR9_protein||AT5G46840.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:19006062-19007609 FORWARD
Length = 365
Score = 324 bits (830), Expect = 6e-089
Identities = 168/190 (88%), Positives = 176/190 (92%), Gaps = 2/190 (1%)
Frame = +1
Query: 4 TRKGAIMLKQINEKASSVHAYVVFETEQSAEASLALNMSLIDGNHVRVDRACPPRKKLKG 183
TRKGAIMLKQINEKASSVHAYVVFETEQSA ASLA NMSLIDGNHVRVDRACPPRKK KG
Sbjct: 76 TRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKG 135
Query: 184 EGQDTLLYDSKRTVFIGNLPFDVKDEEVYQLFTGKSNLENNLEAVRVIRDPHLNIGKGIA 363
DT LYD KRTVF+GNLPFDVKDEEVYQLFTGKSNLEN++EAVRVIRDPHLNIGKGIA
Sbjct: 136 H-DDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIA 194
Query: 364 YVLFKTKEAANLVIKKGYLRLRERELRISRAKPDATPSKRKTNPSEAYSPAGKRQHKDKV 543
YVLFKT+EAANLV+KKGYL+LRERELRISR KPD TPSKRK+NPSEAYSPA KR KDKV
Sbjct: 195 YVLFKTREAANLVLKKGYLKLRERELRISRVKPD-TPSKRKSNPSEAYSPAQKRLQKDKV 253
Query: 544 VTPTATGKAD 573
VTPT TGKA+
Sbjct: 254 VTPTPTGKAN 263
Score = 153 bits (385), Expect = 2e-037
Identities = 83/108 (76%), Positives = 92/108 (85%), Gaps = 4/108 (3%)
Frame = +2
Query: 563 GRLTLSYQGVKASKSGDDDKKKPYQKSPAQSKMRPRSSSSSEGNKGGADSKSAVKQRSQK 742
G+ LSYQGV+ASKSG DDKK PYQKS AQ+KMRPR SSS++ K G + SA K+RSQK
Sbjct: 260 GKANLSYQGVRASKSG-DDKKTPYQKSSAQTKMRPRGSSSNDNKKSG--NNSASKERSQK 316
Query: 743 RPAVAARKAKANAKVGSKESGGKKFAGTKRKQESRTPESFFKKKKAKR 886
RPAVAARKAKANAK GSKESGGK+FAGTKRKQE+RTPESF KKKK KR
Sbjct: 317 RPAVAARKAKANAK-GSKESGGKRFAGTKRKQENRTPESFSKKKKTKR 363
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,955,443,530
Number of Sequences: 33410
Number of Extensions: 3955443530
Number of Successful Extensions: 152801959
Number of sequences better than 0.0: 0
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