BLASTX 7.6.2
Query= UN06585 /QuerySize=1153
(1152 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (... 119 4e-027
TAIR9_protein||AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B,... 83 3e-016
TAIR9_protein||AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B,... 83 3e-016
TAIR9_protein||AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 |... 80 3e-015
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 73 3e-013
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 69 5e-012
TAIR9_protein||AT5G03740.1 | Symbols: HD2C, HDT3 | HD2C (HISTONE... 69 7e-012
TAIR9_protein||AT5G51730.1 | Symbols: | FUNCTIONS IN: molecular... 66 3e-011
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 54 1e-007
TAIR9_protein||AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | HDT4;... 54 2e-007
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 52 6e-007
>TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27633496-27634867 REVERSE
Length = 260
Score = 119 bits (297), Expect = 4e-027
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Frame = -2
Query: 818 KKKKKTANESSSILQEIKEMNKSIKELSEAVKTLQQILLTKADLPEEKETPKDKEEE--- 648
+K+KK N++ + +E K+ + ++ ++ +K L ++ T P TP ++ E
Sbjct: 41 EKQKKQKNQNETSEKETKKFSTVYEKFNDTIKELDRVSGTCPIRPAIPFTPPKEKVEPIY 100
Query: 647 EDSCCFGCKEAKGNDDRTIFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRL 468
+ C F K G D +FV+GF+ PR+EIK AL N F+SCG+V +YVP C
Sbjct: 101 HNECNFDDKAHLGVSDSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGA 160
Query: 467 PLGFAFIDLRNGKGNEKALELNGSYMGGRKLEVTMASHREEYHGFTDFHGCDRCQTF 297
+G+AFID++N K L LNGS++GGRK++V A REE++ ++ C RC+ +
Sbjct: 161 SVGYAFIDMKN---ETKGLTLNGSHLGGRKIDVMFAIDREEFYFSSNLKHCQRCRNY 214
>TAIR9_protein||AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
HD2B (HISTONE DEACETYLASE 2B); histone deacetylase |
chr5:7534120-7536054 FORWARD
Length = 307
Score = 83 bits (204), Expect = 3e-016
Identities = 48/93 (51%), Positives = 60/93 (64%), Gaps = 6/93 (6%)
Frame = -2
Query: 1088 MEFWGAKVKAGKTLKVKPGDNCLIHISQASLS-KAEKGVSALLYATIDDKKLLLGTLSQD 912
MEFWG V KV P ++ L+HISQASL + G S +L T+ KL++GTLSQD
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 911 ----ISFDHLFFDREFELSHSLDRGYVHFIGHQ 825
ISFD L FD+EFELSHS + VHFIG++
Sbjct: 61 KFPQISFD-LVFDKEFELSHSGTKANVHFIGYK 92
>TAIR9_protein||AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
HD2B (HISTONE DEACETYLASE 2B); histone deacetylase |
chr5:7534120-7536054 FORWARD
Length = 306
Score = 83 bits (204), Expect = 3e-016
Identities = 48/93 (51%), Positives = 60/93 (64%), Gaps = 6/93 (6%)
Frame = -2
Query: 1088 MEFWGAKVKAGKTLKVKPGDNCLIHISQASLS-KAEKGVSALLYATIDDKKLLLGTLSQD 912
MEFWG V KV P ++ L+HISQASL + G S +L T+ KL++GTLSQD
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 911 ----ISFDHLFFDREFELSHSLDRGYVHFIGHQ 825
ISFD L FD+EFELSHS + VHFIG++
Sbjct: 61 KFPQISFD-LVFDKEFELSHSGTKANVHFIGYK 92
>TAIR9_protein||AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | HDA3 (HISTONE
DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion
binding | chr3:16298045-16299585 FORWARD
Length = 246
Score = 80 bits (195), Expect = 3e-015
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 5/93 (5%)
Frame = -2
Query: 1088 MEFWGAKVKAGKTLKVKPGDNCLIHISQASLS--KAEKGVSALLYATIDDKKLLLGTLSQ 915
MEFWG +VK+GK + V P + LIH+SQASL K +KG L+ + ++ L+LGTLS
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 914 D---ISFDHLFFDREFELSHSLDRGYVHFIGHQ 825
+ F L FD+EFELSH+ +G V+F+G++
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 73 bits (178), Expect = 3e-013
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Frame = -2
Query: 623 KEAKGNDDRTIFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRLPLGFAFID 444
++ +G+ RTI+V+GF + +EIK L + F+ CGEVTRV+VP + GFA+ID
Sbjct: 471 RKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
Query: 443 LRNGKGNEKALELNGSYMGGRKLEVTMASHREEYHG 336
L + G ++AL+L+GS +GG + V + R+ G
Sbjct: 531 LTS--GFDEALQLSGSEIGGGNIHVEESRPRDSDEG 564
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 69 bits (167), Expect = 5e-012
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = -2
Query: 611 GNDDRTIFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRLPLGFAFIDLRNG 432
G D++ IFVKGF+ ++IKN L F+SCGE+ V VP + G A+++ G
Sbjct: 397 GGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEG 456
Query: 431 KGNEKALELNGSYMGG 384
K EKALELNGS MGG
Sbjct: 457 K--EKALELNGSDMGG 470
>TAIR9_protein||AT5G03740.1 | Symbols: HD2C, HDT3 | HD2C (HISTONE DEACETYLASE
2C); histone deacetylase/ nucleic acid binding / transcription
repressor/ zinc ion binding | chr5:981994-983961 FORWARD
Length = 295
Score = 69 bits (166), Expect = 7e-012
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Frame = -2
Query: 1088 MEFWGAKVKAGKTLKVKPGDNCLIHISQASLSKAEKGVS--ALLYATIDDKKLLLGTLSQ 915
MEFWG +VK GK L + PG + L+HISQ +L +++ V+ LY T+ KLL+GTLS
Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60
Query: 914 DISFDHL----FFDREFELSHSLDRGYVHFIGHQ 825
+ F L +R F LSH+ G V F G++
Sbjct: 61 E-KFPQLSTEIVLERNFALSHTWKNGSVFFSGYK 93
>TAIR9_protein||AT5G51730.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein match is:
ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding /
nucleotide binding (TAIR:AT3G18610.1); Has 68 Blast hits to 54 proteins
in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 61; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). |
chr5:21011418-21013657 FORWARD
Length = 413
Score = 66 bits (160), Expect = 3e-011
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Frame = -2
Query: 836 IGHQRNKKKKKTANESSSILQEIKEMNKSIKELSEAVK--TLQQILLTKADLPEEKETPK 663
I Q + K A ++ ++ N S KE S+ VK TL++ L T + K K
Sbjct: 118 ISDQGEEPAHKKAKTDTNTCKKESSRNVSSKE-SDVVKKETLERTLPTYS----FKNLTK 172
Query: 662 DKEEEEDSCCFGCKEAKGNDDRTIFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFE 483
E E F K+ D TIFVKG+++ N++ AL F+ CG ++R+Y
Sbjct: 173 TAEVGE-RALFIPKQGGRYDCGTIFVKGYDSSLGENDLARALLEHFSPCGMISRIYFQTN 231
Query: 482 CRNRLPLGFAFIDLRNGKGNEKALELNGSYMGGRKLEVTMASHREEYH 339
L FI + +G E AL+LNGS MGG LEV A+ R+E++
Sbjct: 232 DAGEAVLKHVFIVML--QGTEDALKLNGSDMGGCNLEVHDATERDEFY 277
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 54 bits (129), Expect = 1e-007
Identities = 25/77 (32%), Positives = 47/77 (61%)
Frame = -2
Query: 614 KGNDDRTIFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRLPLGFAFIDLRN 435
K + I V+G++ ++ ALT FASCGE+T++YVP + + ++ +F+ ++
Sbjct: 19 KQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKG 78
Query: 434 GKGNEKALELNGSYMGG 384
+KAL+L+G+ +GG
Sbjct: 79 EGAEDKALQLSGTDVGG 95
>TAIR9_protein||AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | HDT4; histone
deacetylase | chr2:11862085-11863707 FORWARD
Length = 204
Score = 54 bits (127), Expect = 2e-007
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Frame = -2
Query: 1088 MEFWGAKVKAGKTLKVKPGDNCLIHISQASL---SKAEKGVSALLYATI--DDKKLLLGT 924
MEFWG ++K GK KV D ++H SQ +L K +K + +Y I D+ ++G
Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60
Query: 923 LSQ---DISFDHLFFDREFELSHSLDRGYVHFIGHQ 825
LSQ S D L+ EFE+SH+ V+ IG++
Sbjct: 61 LSQKFPQFSID-LYLGHEFEISHN-STSSVYLIGYR 94
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 52 bits (123), Expect = 6e-007
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = -2
Query: 587 VKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRLPLGFAFIDLRNGKGNEKALE 408
V G++ P+ +I+ AL F+SCGEVT+V V LP G I L+ + +KAL+
Sbjct: 132 VTGYDTCVPKIDIQMALCEHFSSCGEVTQVVV-------LPSGSGSIYLQGERCEDKALQ 184
Query: 407 LNGSYMGGRKLEV 369
LNG MGG L V
Sbjct: 185 LNGCKMGGMNLVV 197
Score = 49 bits (115), Expect = 5e-006
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = -2
Query: 593 IFVKGFENLRPRNEIKNALTNFFASCGEVTRVYVPFECRNRLPLGFAFIDLRNGKGNEKA 414
I V+G++ +K L FASCG++T +YVP + + AF+ ++ G EKA
Sbjct: 31 ISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGGEEKA 90
Query: 413 LELNGSYMGG 384
L L+G+ GG
Sbjct: 91 LLLSGTDAGG 100
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,955,443,530
Number of Sequences: 33410
Number of Extensions: 3955443530
Number of Successful Extensions: 152801959
Number of sequences better than 0.0: 0
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