BLASTX 7.6.2
Query= UN06717 /QuerySize=1137
(1136 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G21190.1 | Symbols: emb1417 | emb1417 (embryo ... 490 7e-139
TAIR9_protein||AT4G18975.1 | Symbols: | pentatricopeptide (PPR)... 177 2e-044
TAIR9_protein||AT4G18975.2 | Symbols: | pentatricopeptide (PPR)... 177 2e-044
TAIR9_protein||AT4G18975.3 | Symbols: | pentatricopeptide (PPR)... 177 2e-044
TAIR9_protein||AT1G04590.1 | Symbols: | FUNCTIONS IN: molecular... 132 5e-031
TAIR9_protein||AT1G04590.2 | Symbols: | FUNCTIONS IN: molecular... 128 9e-030
TAIR9_protein||AT5G02860.1 | Symbols: | pentatricopeptide (PPR)... 49 5e-006
>TAIR9_protein||AT4G21190.1 | Symbols: emb1417 | emb1417 (embryo defective 1417)
| chr4:11292493-11293763 REVERSE
Length = 308
Score = 490 bits (1261), Expect = 7e-139
Identities = 254/317 (80%), Positives = 275/317 (86%), Gaps = 26/317 (8%)
Frame = +2
Query: 158 MIFLRYSLPPYLPPQTKE-STKLFSKRPNNVVVCAARGPRPRSPRVWKTRKRIGTISKSA 334
M+ LRYSL PYL QT+E STKLF+K+PNNVVVCAARGPRPRSPRVWKTRKRIGTISK+A
Sbjct: 1 MLSLRYSL-PYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAA 59
Query: 335 KMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTILQDEREWKKIVQVTKWMLS 514
KMIACIK LSNVKEEVYGALDSFIAWEL+FPLVIVKKAL IL+DE+EWKKI+QVTKWMLS
Sbjct: 60 KMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLS 119
Query: 515 KGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTPRKFFNKMISIYYKRDMHH 694
KGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHL+GTPRKFFNKMISIYYKRDMH
Sbjct: 120 KGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQ 179
Query: 695 KLFEVFADMEELGVKPNVAIVNMVGKVFLKLGMEDKYEKLVKKYPPPQWEFRYIKGRRVK 874
KLFEVFADMEELGVKPNVAIV+MVGKVF+KL M+DKYEKL+KKYPPPQWEFRYIKGRRVK
Sbjct: 180 KLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVK 239
Query: 875 VKANQLNELSEGEGGLSSDEDSIDDEIESKFELLLSDKEPNKVGEDISAVKRKKKIV--- 1045
VKA QLNELSEGEGGLSSDED ID+EIES+ E GED+S + +K +
Sbjct: 240 VKAKQLNELSEGEGGLSSDEDKIDNEIESEEE----------DGEDLSEEEEDEKELLGG 289
Query: 1046 -----------VDHLDS 1063
+DHLDS
Sbjct: 290 SQGQITSREPSLDHLDS 306
>TAIR9_protein||AT4G18975.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:10392170-10393665 REVERSE
Length = 288
Score = 177 bits (447), Expect = 2e-044
Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Frame = +2
Query: 290 VWKTRKRIGTISKSAKMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTILQDE 469
+WK G+ K+ ++ + L N KE VYGAL+ ++AWE++FP++ KAL IL+
Sbjct: 85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144
Query: 470 REWKKIVQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTPRKF 649
+W +++Q+ KWMLSKGQG TMGTY LL A D R DEAE LWN + H + PR+
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204
Query: 650 FNKMISIYYKRDMHHKLFEVFADMEELGVKPNVAIVNMVGKVFLKLGMEDKYEKLVKKYP 829
F +MI++Y D+H K+ EVFADMEEL V P+ V + F +L E+ + ++++Y
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 263
Query: 830 PPQWEFRYIKGRRVKVK 880
++++ Y G RV+VK
Sbjct: 264 LSEYKYIYFNGERVRVK 280
>TAIR9_protein||AT4G18975.2 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:10392170-10393503 REVERSE
Length = 261
Score = 177 bits (447), Expect = 2e-044
Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Frame = +2
Query: 290 VWKTRKRIGTISKSAKMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTILQDE 469
+WK G+ K+ ++ + L N KE VYGAL+ ++AWE++FP++ KAL IL+
Sbjct: 58 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 117
Query: 470 REWKKIVQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTPRKF 649
+W +++Q+ KWMLSKGQG TMGTY LL A D R DEAE LWN + H + PR+
Sbjct: 118 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 177
Query: 650 FNKMISIYYKRDMHHKLFEVFADMEELGVKPNVAIVNMVGKVFLKLGMEDKYEKLVKKYP 829
F +MI++Y D+H K+ EVFADMEEL V P+ V + F +L E+ + ++++Y
Sbjct: 178 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 236
Query: 830 PPQWEFRYIKGRRVKVK 880
++++ Y G RV+VK
Sbjct: 237 LSEYKYIYFNGERVRVK 253
>TAIR9_protein||AT4G18975.3 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:10392170-10393665 REVERSE
Length = 288
Score = 177 bits (447), Expect = 2e-044
Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Frame = +2
Query: 290 VWKTRKRIGTISKSAKMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTILQDE 469
+WK G+ K+ ++ + L N KE VYGAL+ ++AWE++FP++ KAL IL+
Sbjct: 85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144
Query: 470 REWKKIVQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTPRKF 649
+W +++Q+ KWMLSKGQG TMGTY LL A D R DEAE LWN + H + PR+
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204
Query: 650 FNKMISIYYKRDMHHKLFEVFADMEELGVKPNVAIVNMVGKVFLKLGMEDKYEKLVKKYP 829
F +MI++Y D+H K+ EVFADMEEL V P+ V + F +L E+ + ++++Y
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 263
Query: 830 PPQWEFRYIKGRRVKVK 880
++++ Y G RV+VK
Sbjct: 264 LSEYKYIYFNGERVRVK 280
>TAIR9_protein||AT1G04590.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: emb1417 (embryo
defective 1417) (TAIR:AT4G21190.1); Has 54 Blast hits to 54 proteins in
8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
chr1:1258760-1261411 REVERSE
Length = 382
Score = 132 bits (331), Expect = 5e-031
Identities = 69/183 (37%), Positives = 108/183 (59%), Gaps = 1/183 (0%)
Frame = +2
Query: 281 SPRVWKTRKRIGTISKSAKMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTIL 460
+PR + + I K ++ + ++ + KE VYGALD+++AWE +FP+ +K + L
Sbjct: 130 NPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASL 189
Query: 461 QDEREWKKIVQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTP 640
+ E +W ++VQV KW+LSKGQG TMGTY L+ AL D R +EA +W K L P
Sbjct: 190 EKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVP 249
Query: 641 RKFFNKMISIYYKRDMHHKLFEVFADMEELGVK-PNVAIVNMVGKVFLKLGMEDKYEKLV 817
+ +M+ IY++ +M +L ++F D+E K P+ IV V + LGM D+ E++V
Sbjct: 250 WQLCLQMMRIYFRNNMLQELVKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVV 309
Query: 818 KKY 826
KY
Sbjct: 310 TKY 312
>TAIR9_protein||AT1G04590.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT4G18975.3); Has 54 Blast hits
to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:1258760-1261411 REVERSE
Length = 385
Score = 128 bits (320), Expect = 9e-030
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
Frame = +2
Query: 281 SPRVWKTRKRIGTISKSAKMIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTIL 460
+PR + + I K ++ + ++ + KE VYGALD+++AWE +FP+ +K + L
Sbjct: 130 NPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASL 189
Query: 461 QDEREWKKIVQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTP 640
+ E +W ++VQV KW+LSKGQG TMGTY L+ AL D R +EA +W K L P
Sbjct: 190 EKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVP 249
Query: 641 RKFFNKMISIYYKRDMHHKLFEV---FADMEELGVK-PNVAIVNMVGKVFLKLGMEDKYE 808
+ +M+ IY++ +M +L +V F D+E K P+ IV V + LGM D+ E
Sbjct: 250 WQLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKE 309
Query: 809 KLVKKY 826
++V KY
Sbjct: 310 RVVTKY 315
>TAIR9_protein||AT5G02860.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr5:654102-656561 FORWARD
Length = 820
Score = 49 bits (115), Expect = 5e-006
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Frame = +2
Query: 338 MIACIKELSNVKEEVYGALDSFIAWELDFPLVIVKKALTILQDEREWKKIVQVTKWMLSK 517
+I C K ++ +E + A + V L + K+ ++V M+
Sbjct: 285 LITCCKR-GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 518 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLQGTPRKF-FNKMISIYYKRDMHH 694
G ++ TY SL++A A D LDEA EL N+ M P F + ++S + +
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQ--MAEKGTKPDVFTYTTLLSGFERAGKVE 401
Query: 695 KLFEVFADMEELGVKPNVAIVNMVGKVFLKLGMEDKYEKLVK 820
+F +M G KPN+ N K++ G K+ +++K
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMY---GNRGKFTEMMK 440
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,787,048
Number of Sequences: 33410
Number of Extensions: 4088787048
Number of Successful Extensions: 158137239
Number of sequences better than 0.0: 0
|
