BLASTX 7.6.2
Query= UN07056 /QuerySize=586
(585 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G39040.1 | Symbols: | RNA binding | chr4:1818... 127 4e-030
TAIR9_protein||AT4G39040.2 | Symbols: | RNA binding | chr4:1818... 127 4e-030
TAIR9_protein||AT2G21350.1 | Symbols: | RNA binding | chr2:9136... 95 2e-020
>TAIR9_protein||AT4G39040.1 | Symbols: | RNA binding | chr4:18189249-18190535
REVERSE
Length = 297
Score = 127 bits (319), Expect = 4e-030
Identities = 77/146 (52%), Positives = 96/146 (65%), Gaps = 21/146 (14%)
Frame = -1
Query: 567 SSSSTHLIHNLLRHPEPPSSFGLFLRPFRFSAVTCQSSRCNKPRFQSISSKLPLPFHSTS 388
S SSTHLIHNLLRHP+PPS LFLRPF FSA QS+ NKPRFQS SSK PLP H
Sbjct: 9 SCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSK-PLPCH--- 64
Query: 387 SSSSLVAKSFSAVDEPELGEEDESEEDHYN----------EEEEVESG-MVSARGSEDDE 241
S+SLV KSFS++DEP+L E++ESE++ ++ EE+E +SG +VS RG ED E
Sbjct: 65 -SASLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIEDSE 123
Query: 240 EG-----LGDEEEDKIEKMKKEGLGA 178
+GD+EE KK+ G+
Sbjct: 124 ASEEVSEIGDKEEKTENTKKKKSRGS 149
Score = 119 bits (296), Expect = 2e-027
Identities = 59/66 (89%), Positives = 65/66 (98%)
Frame = -3
Query: 199 EERRARGSGLKLTIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK 20
+++++RGS LKL+IKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK
Sbjct: 142 KKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK 201
Query: 19 VKIRKT 2
VKIRKT
Sbjct: 202 VKIRKT 207
>TAIR9_protein||AT4G39040.2 | Symbols: | RNA binding | chr4:18189292-18190535
REVERSE
Length = 281
Score = 127 bits (319), Expect = 4e-030
Identities = 77/146 (52%), Positives = 96/146 (65%), Gaps = 21/146 (14%)
Frame = -1
Query: 567 SSSSTHLIHNLLRHPEPPSSFGLFLRPFRFSAVTCQSSRCNKPRFQSISSKLPLPFHSTS 388
S SSTHLIHNLLRHP+PPS LFLRPF FSA QS+ NKPRFQS SSK PLP H
Sbjct: 9 SCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSK-PLPCH--- 64
Query: 387 SSSSLVAKSFSAVDEPELGEEDESEEDHYN----------EEEEVESG-MVSARGSEDDE 241
S+SLV KSFS++DEP+L E++ESE++ ++ EE+E +SG +VS RG ED E
Sbjct: 65 -SASLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIEDSE 123
Query: 240 EG-----LGDEEEDKIEKMKKEGLGA 178
+GD+EE KK+ G+
Sbjct: 124 ASEEVSEIGDKEEKTENTKKKKSRGS 149
Score = 119 bits (296), Expect = 2e-027
Identities = 59/66 (89%), Positives = 65/66 (98%)
Frame = -3
Query: 199 EERRARGSGLKLTIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK 20
+++++RGS LKL+IKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK
Sbjct: 142 KKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLK 201
Query: 19 VKIRKT 2
VKIRKT
Sbjct: 202 VKIRKT 207
>TAIR9_protein||AT2G21350.1 | Symbols: | RNA binding | chr2:9136451-9137267
REVERSE
Length = 223
Score = 95 bits (235), Expect = 2e-020
Identities = 48/61 (78%), Positives = 54/61 (88%)
Frame = -3
Query: 184 RGSGLKLTIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRK 5
R S L+L+ KEK++LASYAH LGDKLK QLVGKSGVTDSVV SF+ETLEKNELLKVKI +
Sbjct: 113 RSSALELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHR 172
Query: 4 T 2
T
Sbjct: 173 T 173
Score = 66 bits (160), Expect = 1e-011
Identities = 50/109 (45%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Frame = -1
Query: 567 SSSSTHLIHNLLRHPEPPSSFGLFLRPFRFSAVTCQSSRCNKPRFQSISSKLPLPFHSTS 388
SS+ T+LIH+LLRH +P S LFLRPF S + +SS ISS LPLP S
Sbjct: 6 SSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSS-----HHAWISSSLPLPRPYIS 60
Query: 387 SSSSLVAKSFSAVDEPELGEEDESEEDHYNE------EEEVESGMVSAR 259
S LV KSFS+VDE E E++ S NE E+ E MVS R
Sbjct: 61 FSPLLVPKSFSSVDESEQDEDNVSLVASLNEINDDGQEDGSELTMVSMR 109
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,218,679,643
Number of Sequences: 33410
Number of Extensions: 4218679643
Number of Successful Extensions: 158222708
Number of sequences better than 0.0: 0
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