BLASTX 7.6.2
Query= UN07083 /QuerySize=1707
(1706 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G24690.1 | Symbols: | INVOLVED IN: biological... 827 4e-240
TAIR9_protein||AT5G22790.1 | Symbols: RER1 | RER1 (RETICULATA-RE... 114 3e-025
TAIR9_protein||AT2G40400.1 | Symbols: | unknown protein | chr2:... 76 5e-014
TAIR9_protein||AT2G40400.2 | Symbols: | unknown protein | chr2:... 76 5e-014
TAIR9_protein||AT3G56140.1 | Symbols: | unknown protein | chr3:... 75 1e-013
TAIR9_protein||AT2G37860.3 | Symbols: LCD1 | LCD1 (LOWER CELL DE... 63 6e-010
TAIR9_protein||AT2G37860.2 | Symbols: LCD1 | LCD1 (LOWER CELL DE... 60 3e-009
TAIR9_protein||AT2G37860.1 | Symbols: LCD1 | LCD1 (LOWER CELL DE... 60 3e-009
>TAIR9_protein||AT5G24690.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast
inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: RER1 (RETICULATA-RELATED 1)
(TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species:
Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172;
Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink). |
chr5:8455783-8458513 REVERSE
Length = 522
Score = 827 bits (2136), Expect = 4e-240
Identities = 440/531 (82%), Positives = 473/531 (89%), Gaps = 24/531 (4%)
Frame = +3
Query: 60 VVAP------KPSLPIPRSISFLPCKPRRVSFVRASSSSSSSLIDSVGDSVSGLERCLQL 221
VVAP KP LPIPR + LPCK RR FVRA SSSS L+D DSVSGLERCLQL
Sbjct: 9 VVAPKPLSPLKPCLPIPRPLVTLPCKLRR-GFVRA--SSSSFLVD---DSVSGLERCLQL 62
Query: 222 PFSGDSAPSSSYSTISASSPSAQMCPVMKGGKFGSVGAVTLEKGKLDMTQKKVESTPEIA 401
P SG +SS + SAS+ QMCPVMK GKFGSVGAVTLEKGKLDMTQK E++PEIA
Sbjct: 63 P-SGVELGTSSSGSFSAST---QMCPVMK-GKFGSVGAVTLEKGKLDMTQKISETSPEIA 117
Query: 402 TGGGGGDIGKKINFGGGDGGDDDGDDDDYFDEFDDDDDGDEGGLFRRRMFLAEIFDRKFV 581
TGGGGG+IGK IN GGGDGGDD+GDDDDYFDEFDD D+GD+ GLFRRRMFLAEIFDRKFV
Sbjct: 118 TGGGGGNIGKSINNGGGDGGDDNGDDDDYFDEFDDGDEGDDDGLFRRRMFLAEIFDRKFV 177
Query: 582 DAVLNEWQKTMLDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRLISRALPQGLSRAF 761
DAVLNEWQKTM+DLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTR+ISRALPQGLSRAF
Sbjct: 178 DAVLNEWQKTMMDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRMISRALPQGLSRAF 237
Query: 762 VGRMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSACNAAAVW 941
VGRMLADP+FLY+L+LEQAATVGCSVWWEVK RK+R+KEEWDLALINVLTVSACNAAAVW
Sbjct: 238 VGRMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVW 297
Query: 942 LLAPSRSYGNTFRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSLFYKAAELSILGVAT 1121
LLAP RSYGNTFRFDLQNTLQKLPNN+FE SYPLREFDLQKR HSLFYKAAELSILG+A
Sbjct: 298 LLAPCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAA 357
Query: 1122 GAFQGSLSNFLAGKKKNRVSVTVPSVTTNALGYGAFLGLYANLRYQLLCGFERTMSSHFD 1301
G QGSLSN LAGKKKNRVSVTVPS++TNALGYGAFLG+YANLRYQLLCGFER +SSHFD
Sbjct: 358 GTLQGSLSNVLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFD 417
Query: 1302 VIGVALFFGTAVRIMNVQLGERSRQIWLGVEADPLAQSGGLLAKAYNRPSSSEEAGVAKK 1481
VIGVALFFGTA+RIMNVQLGE+SRQ+WLGVEADPLAQS LLAKAYNRP SEEA K
Sbjct: 418 VIGVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDLLAKAYNRP--SEEA--VAK 473
Query: 1482 PSSRWFISKNAIVSGLLGMKKQEQDSCSDSPPPPKARRKRIVRKKVAAAAA 1634
PSS+WFISKNAIVSGLLG K+++DS SDS PPPKARRKRIVRKKVAA+A+
Sbjct: 474 PSSKWFISKNAIVSGLLG--KKQEDSVSDS-PPPKARRKRIVRKKVAASAS 521
>TAIR9_protein||AT5G22790.1 | Symbols: RER1 | RER1 (RETICULATA-RELATED 1) |
chr5:7599395-7601573 REVERSE
Length = 434
Score = 114 bits (283), Expect = 3e-025
Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 42/353 (11%)
Frame = +3
Query: 351 GKLDMTQKKVESTPEIATGGGGGDIGKKINFGGGDGGD-------DDGDDDDYFDEFDDD 509
G D T +E PE+ G GG + G N GGG+GG+ DG+ DD DE D
Sbjct: 85 GVKDETLSDLE--PELDDGDGGDENGN--NDGGGNGGNGDGGGGGGDGEGDDGEDEADKA 140
Query: 510 DDGDEGGLFRRRMFLAEIFDRKFVDAVLNEWQKTMLDLPAGLRQAYEMGLVSSAQMVKFL 689
++ + G + + + V+ E ++ + LP + +A + + ++++L
Sbjct: 141 EEKEFGPILK-------------FEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYL 187
Query: 690 AINARPTTTRLISRALPQGLSRAFVGRMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDR 869
+ + R+ RMLADPSFL+++ E A C+ + EV+ R +
Sbjct: 188 DLQGSVWPLGFLMRSCAM-----LRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGED 242
Query: 870 IKEEWDLALINVLTVSACNAAAVWLLAP-----SRSYGNTFRF-DLQNTLQKLPNNVFET 1031
E++L ++L + A V LLAP S +T F DL+ LP++VFE
Sbjct: 243 FWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEA 302
Query: 1032 SYPLREFDLQKRVHSLFYKAAELSILGVATGAFQGSLSNFL----AGKKKNRVSVTVPSV 1199
P +F + +R+ + FYK +G G ++N + KK+ V +P +
Sbjct: 303 ERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPL 362
Query: 1200 TTNALGYGAFLGLYANLRYQLLCGFERTM---SSHFDVIGVALFFGTAVRIMN 1349
+A +G FLGL +N RYQ++ G ER + ++ + VA+ F VR N
Sbjct: 363 FESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFAN 415
>TAIR9_protein||AT2G40400.1 | Symbols: | unknown protein |
chr2:16869363-16872569 FORWARD
Length = 736
Score = 76 bits (186), Expect = 5e-014
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Frame = +3
Query: 564 FDRKFVDAVLNEWQKTMLDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRLISRALPQ 743
FDR + V+N + LP +++ ++GLVS + F + P + L R
Sbjct: 409 FDRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQR---- 464
Query: 744 GLSRAFVGRMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSAC 923
+ F R+LADP FL RL +E+A ++ ++ + + RK+ EE D + + + S
Sbjct: 465 --FQGFRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVV 522
Query: 924 NAAAVWLLAPSRSY--------GNTFRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSL 1079
+ VWL AP+ S+ G L+ L +P+N F+ S +E+ L R+ S+
Sbjct: 523 DFFTVWLPAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASV 582
Query: 1080 FYKAAELSILGVATGAFQGSLSNFLAGKKK 1169
+L+ +GV + SN L +K
Sbjct: 583 IIGGLKLAGVGVVSSFAAVGSSNALYAIRK 612
>TAIR9_protein||AT2G40400.2 | Symbols: | unknown protein |
chr2:16869363-16872569 FORWARD
Length = 736
Score = 76 bits (186), Expect = 5e-014
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Frame = +3
Query: 564 FDRKFVDAVLNEWQKTMLDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRLISRALPQ 743
FDR + V+N + LP +++ ++GLVS + F + P + L R
Sbjct: 409 FDRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQR---- 464
Query: 744 GLSRAFVGRMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSAC 923
+ F R+LADP FL RL +E+A ++ ++ + + RK+ EE D + + + S
Sbjct: 465 --FQGFRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVV 522
Query: 924 NAAAVWLLAPSRSY--------GNTFRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSL 1079
+ VWL AP+ S+ G L+ L +P+N F+ S +E+ L R+ S+
Sbjct: 523 DFFTVWLPAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASV 582
Query: 1080 FYKAAELSILGVATGAFQGSLSNFLAGKKK 1169
+L+ +GV + SN L +K
Sbjct: 583 IIGGLKLAGVGVVSSFAAVGSSNALYAIRK 612
>TAIR9_protein||AT3G56140.1 | Symbols: | unknown protein |
chr3:20829407-20832669 FORWARD
Length = 746
Score = 75 bits (183), Expect = 1e-013
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Frame = +3
Query: 564 FDRKFVDAVLNEWQKTMLDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRLISRALPQ 743
FDR + V+N + LP ++ ++GLVS + + P + L R
Sbjct: 418 FDRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQR---- 473
Query: 744 GLSRAFVGRMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSAC 923
+ F R+LADP FL RL +E+A ++ ++ + + RK+ EE D + + + S
Sbjct: 474 --FQGFRERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVV 531
Query: 924 NAAAVWLLAPSRSY--------GNTFRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSL 1079
+ VWL AP+ S+ G L+ L +P+N F+ S RE++L R+ S+
Sbjct: 532 DFFTVWLPAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASV 591
Query: 1080 FYKAAELSILGVATGAFQGSLSNFL 1154
+L+ +GV + SN L
Sbjct: 592 IVGGLKLAGVGVVSSFAAVGASNAL 616
>TAIR9_protein||AT2G37860.3 | Symbols: LCD1 | LCD1 (LOWER CELL DENSITY 1) |
chr2:15856952-15858793 FORWARD
Length = 433
Score = 63 bits (151), Expect = 6e-010
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Frame = +3
Query: 768 RMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSACNAAAVWLL 947
RMLADPSFL+++ E C+ EV+ R E++L + ++L + N A V +L
Sbjct: 209 RMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGML 268
Query: 948 APSRSYGNT-----FRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSLFYKAAELSILG 1112
AP +G F + LP++VFE P F Q+R+ + FYK +G
Sbjct: 269 APYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVG 328
Query: 1113 VATGAFQGSLSNFLAGKKKN 1172
G ++N + K+N
Sbjct: 329 FGCGIVGQGIANLIMTAKRN 348
>TAIR9_protein||AT2G37860.2 | Symbols: LCD1 | LCD1 (LOWER CELL DENSITY 1) |
chr2:15856952-15858351 FORWARD
Length = 348
Score = 60 bits (145), Expect = 3e-009
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Frame = +3
Query: 768 RMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSACNAAAVWLL 947
RMLADPSFL+++ E C+ EV+ R E++L + ++L + N A V +L
Sbjct: 209 RMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGML 268
Query: 948 APSRSYGNT-----FRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSLFYKAAELSILG 1112
AP +G F + LP++VFE P F Q+R+ + FYK +G
Sbjct: 269 APYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVG 328
Query: 1113 VATGAFQGSLSNFLAGKKK 1169
G ++N + K+
Sbjct: 329 FGCGIVGQGIANLIMTAKR 347
>TAIR9_protein||AT2G37860.1 | Symbols: LCD1 | LCD1 (LOWER CELL DENSITY 1) |
chr2:15856952-15858351 FORWARD
Length = 348
Score = 60 bits (145), Expect = 3e-009
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Frame = +3
Query: 768 RMLADPSFLYRLVLEQAATVGCSVWWEVKTRKDRIKEEWDLALINVLTVSACNAAAVWLL 947
RMLADPSFL+++ E C+ EV+ R E++L + ++L + N A V +L
Sbjct: 209 RMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGML 268
Query: 948 APSRSYGNT-----FRFDLQNTLQKLPNNVFETSYPLREFDLQKRVHSLFYKAAELSILG 1112
AP +G F + LP++VFE P F Q+R+ + FYK +G
Sbjct: 269 APYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVG 328
Query: 1113 VATGAFQGSLSNFLAGKKK 1169
G ++N + K+
Sbjct: 329 FGCGIVGQGIANLIMTAKR 347
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,218,679,643
Number of Sequences: 33410
Number of Extensions: 4218679643
Number of Successful Extensions: 158222708
Number of sequences better than 0.0: 0
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