BLASTX 7.6.2
Query= UN07168 /QuerySize=852
(851 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular... 286 1e-077
TAIR9_protein||AT1G69935.1 | Symbols: SHW1 | SHW1 (SHORT HYPOCOT... 109 4e-024
>TAIR9_protein||AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is: SHW1 (SHORT
HYPOCOTYL IN WHITE LIGHT1) (TAIR:AT1G69935.1); Has 20 Blast hits to 20
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:16202174-16203617 REVERSE
Length = 204
Score = 286 bits (731), Expect = 1e-077
Identities = 158/209 (75%), Positives = 168/209 (80%), Gaps = 13/209 (6%)
Frame = +2
Query: 14 MQSSASISSPSSQALLSTKTRSPLSFFFFLAPKAT--TRIPDDHLPSSLFASRRPRDFIN 187
M SASISSPSS L RSPLSFF F PK TR P ASRR RDFIN
Sbjct: 1 MPFSASISSPSSSVAL---LRSPLSFFIF-TPKTLIFTRTRISGFP--YLASRRSRDFIN 54
Query: 188 GRDDL-----SWNRKIRPEYEFDEEEDERDEEEEEEEEDRSLDLLLRFVENVFRKVSKRA 352
GRDD SWNRKI+PEY FDE+ D +++++ EEEDRSLDLLLRFVENVFRK+SKRA
Sbjct: 55 GRDDFADDTRSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRA 114
Query: 353 RKAVRSILPVSISTKLVGFSVNGVLILALLWISKAFLEVACTLGTIVFTSILLIRGLWAG 532
RKAVRSILPVSISTKLVGFSVNGVLILA LWI KAFLEVACTLGTIVFTSILLIRGLWAG
Sbjct: 115 RKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAG 174
Query: 533 VAYVQESRNNRINELADDPRAWNGVQPAS 619
VAY+QESRNNRINELADDPRAWNG+QP S
Sbjct: 175 VAYMQESRNNRINELADDPRAWNGMQPVS 203
>TAIR9_protein||AT1G69935.1 | Symbols: SHW1 | SHW1 (SHORT HYPOCOTYL IN WHITE
LIGHT1) | chr1:26342072-26343082 REVERSE
Length = 193
Score = 109 bits (270), Expect = 4e-024
Identities = 52/107 (48%), Positives = 79/107 (73%)
Frame = +2
Query: 242 EEEDERDEEEEEEEEDRSLDLLLRFVENVFRKVSKRARKAVRSILPVSISTKLVGFSVNG 421
+++ D+++EE+E + S+DLL+RF+ ++F+KVSKR +KA R ILP ++S +LV F+V+G
Sbjct: 79 DDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDG 138
Query: 422 VLILALLWISKAFLEVACTLGTIVFTSILLIRGLWAGVAYVQESRNN 562
+L+L L I++AFLEV C LG VFT ILLIR WA ++ Q N+
Sbjct: 139 ILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQTYGNS 185
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,261,712,161
Number of Sequences: 33410
Number of Extensions: 4261712161
Number of Successful Extensions: 158233541
Number of sequences better than 0.0: 0
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