BLASTX 7.6.2
Query= UN07276 /QuerySize=756
(755 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 272 2e-073
TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 272 2e-073
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 272 2e-073
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b... 248 3e-066
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N... 64 7e-011
>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398588-22400155 REVERSE
Length = 303
Score = 272 bits (694), Expect = 2e-073
Identities = 140/178 (78%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Frame = +3
Query: 99 MVTEEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDASVVDTGDAIYSGSYVSS- 275
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVSK +A T AIYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAP-AHTASAIYSGTYVSST 59
Query: 276 GVDNTMKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 455
D+ +KLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 456 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTDTDQPNEKNTIVFKLHVKCPKGQSRL 629
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL++ DQ NEKNTIVFKLHVKCPK + RL
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRL 177
Score = 61 bits (147), Expect = 6e-010
Identities = 29/40 (72%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
Frame = +1
Query: 634 VLTNELQWLPNGSEFLKESGDSTSTSEPKTYTSFSCSQDS 753
VLT++L+WLPNGSE L+ES TS+PKTYTSFSCSQDS
Sbjct: 179 VLTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDS 216
>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 272 bits (694), Expect = 2e-073
Identities = 140/178 (78%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Frame = +3
Query: 99 MVTEEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDASVVDTGDAIYSGSYVSS- 275
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVSK +A T AIYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAP-AHTASAIYSGTYVSST 59
Query: 276 GVDNTMKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 455
D+ +KLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 456 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTDTDQPNEKNTIVFKLHVKCPKGQSRL 629
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL++ DQ NEKNTIVFKLHVKCPK + RL
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRL 177
Score = 61 bits (147), Expect = 6e-010
Identities = 29/40 (72%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
Frame = +1
Query: 634 VLTNELQWLPNGSEFLKESGDSTSTSEPKTYTSFSCSQDS 753
VLT++L+WLPNGSE L+ES TS+PKTYTSFSCSQDS
Sbjct: 179 VLTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDS 216
>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 272 bits (694), Expect = 2e-073
Identities = 140/178 (78%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Frame = +3
Query: 99 MVTEEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDASVVDTGDAIYSGSYVSS- 275
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVSK +A T AIYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAP-AHTASAIYSGTYVSST 59
Query: 276 GVDNTMKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 455
D+ +KLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 456 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTDTDQPNEKNTIVFKLHVKCPKGQSRL 629
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL++ DQ NEKNTIVFKLHVKCPK + RL
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRL 177
Score = 61 bits (147), Expect = 6e-010
Identities = 29/40 (72%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
Frame = +1
Query: 634 VLTNELQWLPNGSEFLKESGDSTSTSEPKTYTSFSCSQDS 753
VLT++L+WLPNGSE L+ES TS+PKTYTSFSCSQDS
Sbjct: 179 VLTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDS 216
>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22331225-22333370 FORWARD
Length = 386
Score = 248 bits (633), Expect = 3e-066
Identities = 126/177 (71%), Positives = 148/177 (83%), Gaps = 1/177 (0%)
Frame = +3
Query: 96 RMVTEEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDASVVDTGDAIYSGSYVSS 275
R+VT+E+K AKNF I DLPDVP GLPPHL+L++ RVV KKD+++ T +SG+Y S
Sbjct: 8 RIVTDEEKREAKNFNIFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTA-ITFSGAYSSM 66
Query: 276 GVDNTMKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 455
GVDN+++L NF EDFKVDVIS TETDM FDMIG+ A ANAFRRIL+AE+PSMAIEKV +
Sbjct: 67 GVDNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYV 126
Query: 456 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTDTDQPNEKNTIVFKLHVKCPKGQSR 626
A NTS+I DEVLAHR+GLIPIAADPRLFEYL++ DQPNEKNTIVFKLHVKC KG R
Sbjct: 127 ANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPR 183
Score = 61 bits (146), Expect = 8e-010
Identities = 30/40 (75%), Positives = 35/40 (87%), Gaps = 2/40 (5%)
Frame = +1
Query: 634 VLTNELQWLPNGSEFLKESGDSTSTSEPKTYTSFSCSQDS 753
VLT+EL+WLPNGSE +KESG ST+T PKTYTSF+ SQDS
Sbjct: 186 VLTSELKWLPNGSELIKESGGSTTT--PKTYTSFNHSQDS 223
>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
| chr2:6733661-6735482 FORWARD
Length = 320
Score = 64 bits (155), Expect = 7e-011
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Frame = +3
Query: 300 GNFYEDF-KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLI 476
G Y+ F K+ + + +F++ D + ANA RR++I+EVP++AI+ V I N+S++
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 477 VDEVLAHRIGLIPIAADPRLFEYLT------DTDQPNEKNTIVFKLHVKCPKGQS 623
DE +AHR+GLIP+ ++ + + D D E ++ F+L KC Q+
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT 117
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,261,712,161
Number of Sequences: 33410
Number of Extensions: 4261712161
Number of Successful Extensions: 158233541
Number of sequences better than 0.0: 0
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