BLASTX 7.6.2
Query= UN07688 /QuerySize=1176
(1175 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G54380.1 | Symbols: | spliceosome protein-rel... 436 2e-122
TAIR9_protein||AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular... 147 2e-035
TAIR9_protein||AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular... 137 2e-032
>TAIR9_protein||AT1G54380.1 | Symbols: | spliceosome protein-related |
chr1:20298287-20300899 REVERSE
Length = 516
Score = 436 bits (1120), Expect = 2e-122
Identities = 231/357 (64%), Positives = 281/357 (78%), Gaps = 14/357 (3%)
Frame = +3
Query: 12 GTAHGDDKEAPRKHKKTGVKHQHVEASG----GK---IMYSLNQIKSMRYANMANQRKLW 170
GTA ++K+ PRK KK G K +E SG GK +Y+ Q++SMR+A++ NQ+ LW
Sbjct: 161 GTAQ-NEKDTPRKLKKIGDKRNVIEGSGVENNGKQFRRLYTRKQLESMRFAHIVNQKNLW 219
Query: 171 SDVYAMLLPELVSEYEGLVSLKKSQKTSKSSGIGILGTKEGMDDLTLEEEEEEEEEYSED 350
S++Y+ +LPE+V+EYE LV + K+ K+SKS+ + ++L EE E+ E+Y++D
Sbjct: 220 SEMYSRILPEVVTEYESLVYV-KNYKSSKSNRVRGRTESGNEENLGTEEGTEDPEDYTDD 278
Query: 351 NDDYNSILKPAFEVEGEPDFESGPPEDGFEYLRRVRWEAKRVPNVKVAKIDESKYITKEQ 530
NDDYNSIL+PAFEV+GEPDF +GPPEDG EYLRRVRWEAK +PNV+VAKIDES YI KEQ
Sbjct: 279 NDDYNSILRPAFEVDGEPDFSTGPPEDGLEYLRRVRWEAKGIPNVRVAKIDESTYIKKEQ 338
Query: 531 SVYMPQIPEIPKCPEHLLPLKEWEDSLLSDFSHLRLALSQTDNNFFGDEIMSSSPSTEYM 710
SVYMP IPEIPKCPE+LLP+KEWEDSLL DF HLR L+Q+ N+ DEI+SS E +
Sbjct: 339 SVYMPLIPEIPKCPEYLLPMKEWEDSLLLDFVHLRQTLTQSANS-CEDEIISSQ-CVEDL 396
Query: 711 LMGMFSTRLNTVTDESFGVVVSEIQGMDSVTRVSRLKKRICLVEKESGLQGSDCIWVVAL 890
L+ MF+ L+T DESFG VV++IQGMDSVTRVS+LKKRICLVEKESGLQ SDC WVVAL
Sbjct: 397 LVEMFNKHLHTEEDESFGEVVTDIQGMDSVTRVSKLKKRICLVEKESGLQSSDCKWVVAL 456
Query: 891 CASVDTPLDGDTCACLRALLRKCASVRA---LEVEDEQVIIMANMLITIAGRYFGQM 1052
CAS++TPLD DTCACLR LLRKCASVRA LEV DE+VI MANMLITIAGRYFGQM
Sbjct: 457 CASLETPLDADTCACLRGLLRKCASVRAETSLEVGDEEVITMANMLITIAGRYFGQM 513
>TAIR9_protein||AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via
spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein match is:
spliceosome protein-related (TAIR:AT1G54380.1). |
chr2:17701686-17704618 FORWARD
Length = 654
Score = 147 bits (369), Expect = 2e-035
Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 8/192 (4%)
Frame = +3
Query: 15 TAHGDDKEAPRKHKKTGVKHQHVEASGGKIM--YSLNQIKSMRYANMANQRKLWSDVYAM 188
TAH DK+APRKHKK GV+ + + I+ + ++ R + N ++L +Y+
Sbjct: 328 TAH-TDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQL-RIMYSR 385
Query: 189 LLPELVSEYEGLVSLKKSQKTSKSSGIGILGTK-EGMDDLTLEEEEE--EEEEYSEDNDD 359
E + Y + + KK + + L T+ EG ++ +EE +EDNDD
Sbjct: 386 NQMESM-RYAHIANQKKLWSDLYARLLPELVTEYEGPISAVPRRTQDYVVKEEKTEDNDD 444
Query: 360 YNSILKPAFEVEGEPDFESGPPEDGFEYLRRVRWEAKRVPNVKVAKIDESKYITKEQSVY 539
YNSIL+PAF V+GEPDF+SGPPEDG EYLRRVRWEAKR+PNVKVAK+ SKY KEQSVY
Sbjct: 445 YNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVY 504
Query: 540 MPQIPEIPKCPE 575
MPQIP P E
Sbjct: 505 MPQIPRAPATGE 516
Score = 84 bits (207), Expect = 1e-016
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +3
Query: 840 EKESGLQGSDCIWVVALCASVDTPLDGDTCACLRALLRKCASVRALEV 983
EKESGL+ SDC WVVALCASVDTP D DT ACLRAL+RKCAS+RALEV
Sbjct: 570 EKESGLESSDCKWVVALCASVDTPPDADTSACLRALVRKCASLRALEV 617
Score = 53 bits (125), Expect = 4e-007
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 982 LKMNKSSSWQICSSPSQADILAKWNKRC*IVTS 1080
L+MNK S WQICSSPSQADILAKWN+R + T+
Sbjct: 620 LEMNKLSLWQICSSPSQADILAKWNERRSVFTT 652
>TAIR9_protein||AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via
spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein match is:
spliceosome protein-related (TAIR:AT1G54380.1); Has 294 Blast hits to
263 proteins in 60 species: Archae - 2; Bacteria - 35; Metazoa - 52;
Fungi - 12; Plants - 28; Viruses - 0; Other Eukaryotes - 165 (source:
NCBI BLink). | chr2:17701686-17704255 FORWARD
Length = 533
Score = 137 bits (343), Expect = 2e-032
Identities = 64/87 (73%), Positives = 72/87 (82%)
Frame = +3
Query: 315 EEEEEEEEYSEDNDDYNSILKPAFEVEGEPDFESGPPEDGFEYLRRVRWEAKRVPNVKVA 494
E+ +EE +EDNDDYNSIL+PAF V+GEPDF+SGPPEDG EYLRRVRWEAKR+PNVKVA
Sbjct: 412 EDYVVKEEKTEDNDDYNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVA 471
Query: 495 KIDESKYITKEQSVYMPQIPEIPKCPE 575
K+ SKY KEQSVYMPQIP P E
Sbjct: 472 KVSGSKYREKEQSVYMPQIPRAPATGE 498
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,536,870,326
Number of Sequences: 33410
Number of Extensions: 4536870326
Number of Successful Extensions: 173836284
Number of sequences better than 0.0: 0
|