BLASTX 7.6.2
Query= UN07972 /QuerySize=1380
(1379 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba] 704 1e-200
gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT... 667 1e-189
gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arab... 662 6e-188
gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigm... 658 7e-187
gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana] 655 6e-186
gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIG... 577 2e-162
gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vini... 577 2e-162
gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpo... 573 3e-161
gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea] 567 2e-159
gi|224126061|ref|XP_002319746.1| predicted protein [Populus tric... 546 4e-153
gi|224144900|ref|XP_002325455.1| predicted protein [Populus tric... 535 6e-150
gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sa... 411 2e-112
gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japo... 411 2e-112
gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryz... 409 7e-112
gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativ... 408 2e-111
gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays] 394 3e-107
gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare ... 388 1e-105
gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT... 369 6e-100
gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis] 364 3e-098
gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis] 364 3e-098
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 704 bits (1816), Expect = 1e-200
Identities = 362/394 (91%), Positives = 377/394 (95%), Gaps = 7/394 (1%)
Frame = -3
Query: 1242 DCNKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSV 1063
+CNKE+SDDL EKQE E+LSVSSAVRSTRQTERKARR KGLEKTAS MQ SV
Sbjct: 185 ECNKEASDDLTPAEKQEV------EKLSVSSAVRSTRQTERKARRVKGLEKTASGMQSSV 238
Query: 1062 KTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAE 883
K TGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREE +LSEGIQDLLKLERLQAE
Sbjct: 239 K-TGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAE 297
Query: 882 LTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMN 703
LTERCGHQPTF QWASAAGVD+KTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGM+
Sbjct: 298 LTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMD 357
Query: 702 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 523
QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT
Sbjct: 358 FQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417
Query: 522 YRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPS 343
YRVKEARKQLYSETG+QPKNEEVAEATGLSMKRLMAVLL+PKPPRSLDQKIGINLNLKPS
Sbjct: 418 YRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPS 477
Query: 342 EVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 163
EVI+DPEAETSEDIL+KQFMR+DLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM
Sbjct: 478 EVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 537
Query: 162 GISRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
G+SRERVRQI++SAFRKLKNKKRN+HLQQYLVAQ
Sbjct: 538 GVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVAQ 571
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915
[Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 667 bits (1720), Expect = 1e-189
Identities = 346/395 (87%), Positives = 366/395 (92%), Gaps = 4/395 (1%)
Frame = -3
Query: 1245 PDCNKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQS 1066
P NKES DLESE+++E E LEE+ SVS AVRSTRQTERKARRAKGLEKTAS + S
Sbjct: 181 PASNKESPGDLESEKQEEVELLEEQP--SVSLAVRSTRQTERKARRAKGLEKTASGI-PS 237
Query: 1065 VKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQA 886
VK TGS+ RKKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE ELS GIQDLLKLERLQ
Sbjct: 238 VK-TGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQT 296
Query: 885 ELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGM 706
ELTERCG QPTF QWASAAGVDQK+LRKRI HGT CKD+MIKSNIRLVISIAKNYQGAGM
Sbjct: 297 ELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGM 356
Query: 705 NLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA 526
NLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA
Sbjct: 357 NLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA 416
Query: 525 TYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKP 346
TYRVKEARKQLYSETG+ PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKP
Sbjct: 417 TYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKP 476
Query: 345 SEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGET 166
SEVI+DPEA TSEDILIK+FMR+DLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE
Sbjct: 477 SEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEM 536
Query: 165 MGISRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
MG+SRERVRQIESSAFRKLKNKKR+NHLQQYLVAQ
Sbjct: 537 MGVSRERVRQIESSAFRKLKNKKRSNHLQQYLVAQ 571
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis
thaliana]
Length = 572
Score = 662 bits (1706), Expect = 6e-188
Identities = 344/392 (87%), Positives = 364/392 (92%), Gaps = 4/392 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKT 1057
NKES DLESE+++E E LEE+ SVS AVRSTRQTERKARRAKGLEKTAS + SVK
Sbjct: 184 NKESIGDLESEKQEEVELLEEQP--SVSLAVRSTRQTERKARRAKGLEKTASGI-PSVK- 239
Query: 1056 TGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELT 877
TGSS +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE ELS GIQDLLKLERLQ ELT
Sbjct: 240 TGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 876 ERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQ 697
ER G QPTF QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 300 ERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 696 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 517
DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR
Sbjct: 360 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 419
Query: 516 VKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEV 337
VKEARKQLYSETG+ PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEV
Sbjct: 420 VKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV 479
Query: 336 ISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGI 157
I+DPEA TSEDILIK+FMR+DLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE MG+
Sbjct: 480 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 156 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ
Sbjct: 540 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 571
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1
[Arabidopsis thaliana]
Length = 572
Score = 658 bits (1697), Expect = 7e-187
Identities = 342/392 (87%), Positives = 362/392 (92%), Gaps = 4/392 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKT 1057
NKES DLESE+++E E LEE+ SV AVRSTRQTERKARRAKGLEKTAS + SVK
Sbjct: 184 NKESIGDLESEKQEEVELLEEQP--SVGLAVRSTRQTERKARRAKGLEKTASGI-PSVK- 239
Query: 1056 TGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELT 877
TGSS +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE ELS GIQDLLKLERLQ ELT
Sbjct: 240 TGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 876 ERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQ 697
ER G QPTF QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 300 ERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 696 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 517
DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR
Sbjct: 360 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 419
Query: 516 VKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEV 337
VKEARKQLYSETG+ PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEV
Sbjct: 420 VKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV 479
Query: 336 ISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGI 157
I+DPEA T EDILIK+FMR+DLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE MG+
Sbjct: 480 IADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 156 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ
Sbjct: 540 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 571
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 655 bits (1689), Expect = 6e-186
Identities = 343/394 (87%), Positives = 364/394 (92%), Gaps = 6/394 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKT 1057
NKES DLESE+++E E LEE+ SVS AVRSTRQTERKARRAKGLEKTAS + SVK
Sbjct: 184 NKESIGDLESEKQEEVELLEEQP--SVSLAVRSTRQTERKARRAKGLEKTASGI-PSVK- 239
Query: 1056 TGSSSRKKRVASQEIDHNDPLRYLRMTTSSS--KLLTAREETELSEGIQDLLKLERLQAE 883
TGSS +KKR+ +QE+DHNDPLRYLRMTTSSS KLLT REE ELS GIQDLLKLERLQ E
Sbjct: 240 TGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQTE 299
Query: 882 LTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMN 703
LTER G QPTF QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGMN
Sbjct: 300 LTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 359
Query: 702 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 523
LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT
Sbjct: 360 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 419
Query: 522 YRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPS 343
YRVKEARKQLYSETG+ PKNEE+AEATGLSMKRLMAVLL+PKPPRSLD+KIG+N NLKPS
Sbjct: 420 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPS 479
Query: 342 EVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 163
EVI+DPEA TSEDILIK+FMR+DLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE M
Sbjct: 480 EVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 539
Query: 162 GISRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
G+SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ
Sbjct: 540 GVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 573
>gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIGMA FACTOR B);
DNA binding / DNA-directed RNA polymerase/ transcription factor [Vitis
vinifera]
Length = 578
Score = 577 bits (1486), Expect = 2e-162
Identities = 302/389 (77%), Positives = 340/389 (87%), Gaps = 5/389 (1%)
Frame = -3
Query: 1230 ESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTG 1051
E SDDLE +E E L E E S S VRS RQ ERKARRA+ EK AS+ SV+ +G
Sbjct: 195 EDSDDLE-PTLEELELL--EAEFSKSIVVRSNRQVERKARRARAAEK-ASAGVVSVR-SG 249
Query: 1050 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTER 871
S+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA EE ELSEGIQDLLKLE+LQ +L ER
Sbjct: 250 STSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEER 309
Query: 870 CGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDL 691
G +PTF QWA+AAGVDQKTLR+R +G +CKD+MIKSNIRLVISIAKNYQGAGMN+QDL
Sbjct: 310 FGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDL 369
Query: 690 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 511
VQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVK
Sbjct: 370 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 429
Query: 510 EARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 331
EARKQLYSE G+ P NEEVAEATGLSMKRL AVLL PK PRSLDQKIGIN NLKPSEVI+
Sbjct: 430 EARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIA 489
Query: 330 DPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISR 151
DP+AET+E++LIKQFMREDL+KVL+SL+ REKQVIRWR+G+EDGR KTLQEIGE MG+SR
Sbjct: 490 DPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSR 549
Query: 150 ERVRQIESSAFRKLKNKKRNNHLQQYLVA 64
ER+RQIES AFRKLKNK+R HLQQYLV+
Sbjct: 550 ERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 577 bits (1486), Expect = 2e-162
Identities = 302/389 (77%), Positives = 340/389 (87%), Gaps = 5/389 (1%)
Frame = -3
Query: 1230 ESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTG 1051
E SDDLE +E E L E E S S VRS RQ ERKARRA+ EK AS+ SV+ +G
Sbjct: 192 EDSDDLE-PTLEELELL--EAEFSKSIVVRSNRQVERKARRARAAEK-ASAGVVSVR-SG 246
Query: 1050 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTER 871
S+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA EE ELSEGIQDLLKLE+LQ +L ER
Sbjct: 247 STSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEER 306
Query: 870 CGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDL 691
G +PTF QWA+AAGVDQKTLR+R +G +CKD+MIKSNIRLVISIAKNYQGAGMN+QDL
Sbjct: 307 FGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDL 366
Query: 690 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 511
VQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVK
Sbjct: 367 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 426
Query: 510 EARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 331
EARKQLYSE G+ P NEEVAEATGLSMKRL AVLL PK PRSLDQKIGIN NLKPSEVI+
Sbjct: 427 EARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIA 486
Query: 330 DPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISR 151
DP+AET+E++LIKQFMREDL+KVL+SL+ REKQVIRWR+G+EDGR KTLQEIGE MG+SR
Sbjct: 487 DPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSR 546
Query: 150 ERVRQIESSAFRKLKNKKRNNHLQQYLVA 64
ER+RQIES AFRKLKNK+R HLQQYLV+
Sbjct: 547 ERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative
[Ricinus communis]
Length = 569
Score = 573 bits (1476), Expect = 3e-161
Identities = 300/389 (77%), Positives = 341/389 (87%), Gaps = 5/389 (1%)
Frame = -3
Query: 1230 ESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTG 1051
+ SD LE K E E L +++LS AVRS RQTERKARRA+ +EK ASS+ SVK G
Sbjct: 186 KESDYLELTHK-ELELL--QKQLSEGIAVRSRRQTERKARRARAVEKAASSV-VSVK-PG 240
Query: 1050 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTER 871
S+S+KKR + QE+D++DPLRYLR TTS+S+LLTA EE ELS IQDLLKLERLQ EL ER
Sbjct: 241 STSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAER 300
Query: 870 CGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDL 691
G QPTF QWA+AAGVDQ+TLRKRI HGT CKD+MIKSNIRLVISIAKNYQGAGMNLQDL
Sbjct: 301 YGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDL 360
Query: 690 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 511
VQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVK
Sbjct: 361 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 420
Query: 510 EARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 331
EARKQLYSE G+ P +EEVAEA GLSMKRL AVLL PK PRSLDQKIG+N++LKPSEVI+
Sbjct: 421 EARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIA 480
Query: 330 DPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISR 151
DPEAET+E++L+KQFM++DL+KVL++L+ RE QV+RWRFG+EDGRMKTLQEIGE MG+SR
Sbjct: 481 DPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSR 540
Query: 150 ERVRQIESSAFRKLKNKKRNNHLQQYLVA 64
ER+RQIESSAFRKLKNKKR L+QYL+A
Sbjct: 541 ERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 567 bits (1461), Expect = 2e-159
Identities = 294/393 (74%), Positives = 334/393 (84%), Gaps = 6/393 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAEPLEE----EEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQ 1069
N D SE +EE E EL S VRSTRQ ERKARRA+ EK AS++
Sbjct: 183 NSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARAAEKVASNV-V 241
Query: 1068 SVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQ 889
SVK GS+SRKKR + QE+D++DPLRYLR T+SS+LLT+ EETELS GIQDLLKLE+L
Sbjct: 242 SVK-VGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLH 300
Query: 888 AELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAG 709
EL R G P+F QWA+AAG+DQ+TLR+R+ HGT CKD+MIKSN+RLVISIAKNYQG+G
Sbjct: 301 DELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSG 360
Query: 708 MNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVE 529
MNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVE
Sbjct: 361 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 420
Query: 528 ATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLK 349
ATYRVKEARKQL SE G+QP NEEVAEATGLSMKRL AVL+ PK PRSLDQKIG N+NLK
Sbjct: 421 ATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLK 480
Query: 348 PSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGE 169
PSEVI+DPEAET+ED+L KQFMR+DL+KVLD+LS+REKQVIRWRFG+EDGRMKTLQEIGE
Sbjct: 481 PSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGE 540
Query: 168 TMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
MG+SRER+RQIESSAFRKL+NKK+ +LQQY+
Sbjct: 541 LMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 546 bits (1406), Expect = 4e-153
Identities = 284/395 (71%), Positives = 331/395 (83%), Gaps = 7/395 (1%)
Frame = -3
Query: 1233 KESSDDLESEEKQEAEPLEEE-----EELSVSSAVRSTRQTERKARRAKGLEKTASSMQQ 1069
+E S +EE EP +EE ++LS AVRS RQTERKARRA+ EK A+++
Sbjct: 175 EEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANV-V 233
Query: 1068 SVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQ 889
SVK +GS+S+KKRV QE+D +DPLR+ R +SSS+LL+A EE ELSEGIQDLLKLER++
Sbjct: 234 SVK-SGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIE 292
Query: 888 AELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAG 709
EL ER G +P+F QWA+AAGVDQ TLRKR+ +G CKD+MIKSN+RLVISIAKNYQG G
Sbjct: 293 EELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTG 352
Query: 708 MNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVE 529
MNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD+SR IRLPFHMV+
Sbjct: 353 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVD 412
Query: 528 ATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLK 349
ATYRVKEARKQLYSE G+ P ++EVAEA GLSMKRL AVLL PK PRSLDQK+G N++LK
Sbjct: 413 ATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLK 472
Query: 348 PSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGE 169
SEV +DPEAET+ED+L+K+FM++DL KVL SLS RE QV+RWRFGMEDGRMKTLQEIGE
Sbjct: 473 LSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGE 532
Query: 168 TMGISRERVRQIESSAFRKLKNKKRNNHLQQYLVA 64
MG+SRERVRQIE SAFRKLKNK R L+QY+VA
Sbjct: 533 LMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 535 bits (1378), Expect = 6e-150
Identities = 276/413 (66%), Positives = 329/413 (79%), Gaps = 7/413 (1%)
Frame = -3
Query: 1287 KSMSSCLFLQFKCPPDCNKESSDDLESEEKQEAEPLEE-----EEELSVSSAVRSTRQTE 1123
K + + + F +E S +EE P E E++LS S VRS RQT+
Sbjct: 154 KERADIIGVSFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQ 213
Query: 1122 RKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTARE 943
RKA+RA+ EK A++ +GS+ +KKRV QE+D +DPLR+ R ++SS+LL+A E
Sbjct: 214 RKAKRARAAEKAAANF--VFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATE 271
Query: 942 ETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMI 763
E ELSEGIQDLLKLER++ EL ER G +PTF QWA+AA VDQ TLRKR+ + CKD+MI
Sbjct: 272 EVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMI 331
Query: 762 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 583
KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWI+QAVR
Sbjct: 332 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVR 391
Query: 582 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLA 403
+SLSDQSR IRLPFHMV+ATYRVKEARKQ YSE G+ P ++EVAEATGLSMKRL AVLL
Sbjct: 392 RSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLT 451
Query: 402 PKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIR 223
PK PRSLDQK+G N++LK SEV +DPEAET+ED+L+K+FM++DL++VL+SLS RE QVIR
Sbjct: 452 PKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIR 511
Query: 222 WRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYLVA 64
WRFGMEDGRMKTLQEIGE MG+SRER+RQIE SAFRKLKNK R L+QYLV+
Sbjct: 512 WRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica
Group]
Length = 563
Score = 411 bits (1054), Expect = 2e-112
Identities = 224/418 (53%), Positives = 301/418 (72%), Gaps = 13/418 (3%)
Frame = -3
Query: 1293 PEKSMSSCL---FLQFKCPPDCNKESSDDLESEEKQEAEPLEEEEELS------VSSAVR 1141
P+K++ + L L+ + P+ + SD + SEE + L +E EL S AV+
Sbjct: 146 PKKAVVNYLANEILRTEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVK 205
Query: 1140 STRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK 961
S RQTER+ARR + K A+ ++ S K +SS+KKR N +MT +
Sbjct: 206 SARQTERRARRTRAAIKAATIVRTSPK-PATSSKKKRSKGASSGTNPLGSLWKMT--GRR 262
Query: 960 LLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQ 781
LLTA+EE E SEGIQDLLKLE +QAEL E G QPTF QWA+AAGVD++TLRKR+ HG
Sbjct: 263 LLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIY 322
Query: 780 CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 601
CK+RM+ SN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWW
Sbjct: 323 CKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 382
Query: 600 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRL 421
IKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + ++P NEE+A TG+ +KR+
Sbjct: 383 IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRV 442
Query: 420 MAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTR 241
A + PK SLD KIG + ++ EV +DP AET+E++L + M+ D+ K LD+L+TR
Sbjct: 443 EAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTR 501
Query: 240 EKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYLV 67
E+QV+ RFG+EDGR++TLQEIG TMG+SRER+RQIES+AFRKL++KKR N L+ YLV
Sbjct: 502 ERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 411 bits (1054), Expect = 2e-112
Identities = 224/418 (53%), Positives = 301/418 (72%), Gaps = 13/418 (3%)
Frame = -3
Query: 1293 PEKSMSSCL---FLQFKCPPDCNKESSDDLESEEKQEAEPLEEEEELS------VSSAVR 1141
P+K++ + L L+ + P+ + SD + SEE + L +E EL S AV+
Sbjct: 146 PKKAVVNYLANEILRTEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVK 205
Query: 1140 STRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK 961
S RQTER+ARR + K A+ ++ S K +SS+KKR N +MT +
Sbjct: 206 SARQTERRARRTRAAIKAATIVRTSPK-PATSSKKKRSKGASSGTNPLGSLWKMT--GRR 262
Query: 960 LLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQ 781
LLTA+EE E SEGIQDLLKLE +QAEL E G QPTF QWA+AAGVD++TLRKR+ HG
Sbjct: 263 LLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIY 322
Query: 780 CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 601
CK+RM+ SN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWW
Sbjct: 323 CKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 382
Query: 600 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRL 421
IKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + ++P NEE+A TG+ +KR+
Sbjct: 383 IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRV 442
Query: 420 MAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTR 241
A + PK SLD KIG + ++ EV +DP AET+E++L + M+ D+ K LD+L+TR
Sbjct: 443 EAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTR 501
Query: 240 EKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYLV 67
E+QV+ RFG+EDGR++TLQEIG TMG+SRER+RQIES+AFRKL++KKR N L+ YLV
Sbjct: 502 ERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica
Group]
Length = 563
Score = 409 bits (1050), Expect = 7e-112
Identities = 224/418 (53%), Positives = 300/418 (71%), Gaps = 13/418 (3%)
Frame = -3
Query: 1293 PEKSMSSCL---FLQFKCPPDCNKESSDDLESEEKQEAEPLEEEEELS------VSSAVR 1141
P+K++ + L L+ + P+ + SD + SEE + L E EL S AV+
Sbjct: 145 PKKAVVNYLANEILRTEMKPNILDKYSDGILSEEIESYGILSGEAELDGDTQDIPSIAVK 204
Query: 1140 STRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK 961
S RQTER+ARR + K A+ ++ S K +SS+KKR N +MT +
Sbjct: 205 SARQTERRARRTRAAIKAATIVRTSPK-PATSSKKKRSKGASSGTNPLGSLWKMT--GRR 261
Query: 960 LLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQ 781
LLTA+EE E SEGIQDLLKLE +QAEL E G QPTF QWA+AAGVD++TLRKR+ HG
Sbjct: 262 LLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIY 321
Query: 780 CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 601
CK+RM+ SN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWW
Sbjct: 322 CKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 381
Query: 600 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRL 421
IKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + ++P NEE+A TG+ +KR+
Sbjct: 382 IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRV 441
Query: 420 MAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTR 241
A + PK SLD KIG + ++ EV +DP AET+E++L + M+ D+ K LD+L+TR
Sbjct: 442 EAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTR 500
Query: 240 EKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYLV 67
E+QV+ RFG+EDGR++TLQEIG TMG+SRER+RQIES+AFRKL++KKR N L+ YLV
Sbjct: 501 ERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica
Group]
Length = 564
Score = 408 bits (1047), Expect = 2e-111
Identities = 223/418 (53%), Positives = 300/418 (71%), Gaps = 13/418 (3%)
Frame = -3
Query: 1293 PEKSMSSCL---FLQFKCPPDCNKESSDDLESEEKQEAEPLEEEEELS------VSSAVR 1141
P+K++ + L L+ + P+ + SD + SEE + L +E EL S AV+
Sbjct: 146 PKKAVVNYLANEILRTEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVK 205
Query: 1140 STRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK 961
S RQTE +ARR + K A+ ++ S K +SS+KKR N +MT +
Sbjct: 206 SARQTEGRARRTRAAIKAATIVRTSPK-PATSSKKKRSKGASSGTNPLGSLWKMT--GRR 262
Query: 960 LLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQ 781
LLTA+EE E SEGIQDLLKLE +QAEL E G QPTF QWA+AAGVD++TLRKR+ HG
Sbjct: 263 LLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIY 322
Query: 780 CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 601
CK+RM+ SN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDA+KGF+FSTY+HWW
Sbjct: 323 CKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 382
Query: 600 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRL 421
IKQA+RKS+S+QS++ RLP HMVEA+YRVKE K+L + ++P NEE+A TG+ +KR+
Sbjct: 383 IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRV 442
Query: 420 MAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTR 241
A + PK SLD KIG + ++ EV +DP AET+E++L + M+ D+ K LD+L+TR
Sbjct: 443 EAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTR 501
Query: 240 EKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYLV 67
E+QV+ RFG+EDGR++TLQEIG TMG+SRER+RQIES+AFRKL++KKR N L+ YLV
Sbjct: 502 ERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 394 bits (1010), Expect = 3e-107
Identities = 209/391 (53%), Positives = 285/391 (72%), Gaps = 5/391 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAE-PLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVK 1060
N + L+S +AE L+ + + + AV+S RQ+ERKARR + K ++++ S K
Sbjct: 148 NNPLMEYLDSYGIMDAEDELDAYAQYTENIAVKSARQSERKARRTRAAIKASTTLHASQK 207
Query: 1059 TTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAEL 880
SS +K+ S +PL L T +LLTA+EE E SEGIQDLLKLE +QAEL
Sbjct: 208 VALSSKKKRSKGSS--SSMNPLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAEL 264
Query: 879 TERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNL 700
E G QPTF QWA+AAGVD+KTLRKR+ +G CK+RM+ SN+RLVISIA+ ++G GM+
Sbjct: 265 IEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDF 324
Query: 699 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 520
DL+QEG +GL+RGAEKFD++KGF+FSTY+HWWIKQA+RKS+S+QS++ RLP HMVEA+Y
Sbjct: 325 YDLIQEGMQGLIRGAEKFDSSKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASY 384
Query: 519 RVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSE 340
RVKE K+L + ++P NEE+A TG+ +KR+ A + PK SLD KIG + ++ E
Sbjct: 385 RVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQE 443
Query: 339 VISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMG 160
V +DP AET+E++L + M++D+ LD+L+TREKQV+ RFG+EDGR++TLQEIG MG
Sbjct: 444 VTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMG 503
Query: 159 ISRERVRQIESSAFRKLKNKKRNNHLQQYLV 67
+SRER+RQIES AFRKL++KK+ L+ YLV
Sbjct: 504 VSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 552
Score = 388 bits (996), Expect = 1e-105
Identities = 203/376 (53%), Positives = 279/376 (74%), Gaps = 6/376 (1%)
Frame = -3
Query: 1194 EAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQE 1015
EAE L+++++ + + AV+S RQ+ER+ARR + K A +++ S+K SS +K+ S+
Sbjct: 178 EAE-LDDDKQDAENIAVKSARQSERRARRTRATMKAAITVRGSLKLVTSSKKKR---SKG 233
Query: 1014 IDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWAS 835
+PL L T KLLTA+EE ELS GIQDLLKLE +Q EL E G QPTF QWA+
Sbjct: 234 PSTMNPLGSLWKMT-GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAA 292
Query: 834 AAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 655
AAG D+ TLRKR+ HG CK+RM+ SN+RLVISIA+ ++G G+ L DL+QEG +GL+RGA
Sbjct: 293 AAGTDENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGA 352
Query: 654 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQ 475
EKFDA+KGF+FSTY+HWWIKQA+RKS+S+Q+++ RLP HMVEA+YRVKE K+L + +
Sbjct: 353 EKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLKR 412
Query: 474 QPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILI 295
+P NEE+A G+ +KR+ A + PK SLD KIG + ++ EV +DP AET+E++L
Sbjct: 413 RPSNEEIAVDIGMPVKRVEAAVSLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLN 471
Query: 294 KQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFR 115
+ M++D+ + LD+LS RE+QV++ RFG+ DGR++TLQEIG MG+SRER+RQIES AFR
Sbjct: 472 RMSMKKDVHQALDTLSPRERQVVKLRFGINDGRIRTLQEIGNIMGVSRERIRQIESGAFR 531
Query: 114 KLKNKKRNNHLQQYLV 67
KL+ KK+ L YLV
Sbjct: 532 KLRGKKKVKCLMDYLV 547
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810
[Sorghum bicolor]
Length = 528
Score = 369 bits (947), Expect = 6e-100
Identities = 192/388 (49%), Positives = 272/388 (70%), Gaps = 10/388 (2%)
Frame = -3
Query: 1230 ESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTG 1051
E + S+E ++ + +++ S++ AV+S R+TERKARR + K A
Sbjct: 144 EEFSSIFSDESEDDD--DDDSGHSIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGA 201
Query: 1050 SSSRKKRVASQEIDHNDPLR-YLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTE 874
SS+RKKR+ + PL + +MT +LLTA +E E SEGIQDLLKLE +Q E+ +
Sbjct: 202 SSTRKKRLKGCQ----TPLGCFYKMT--GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQ 255
Query: 873 RCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQD 694
G +PTF QWA+AAG D+ TLR+R+ HG CK+RM+KSN+RLVISIAK ++G GM D
Sbjct: 256 YNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSD 315
Query: 693 LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRV 514
L+QEG +GL+RGAEKFDA+KGF+FSTY+HWWIKQA+RKS+ +Q+++IRLP HM EA+ RV
Sbjct: 316 LIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRV 375
Query: 513 KEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVI 334
KE ++L E + P NEE+A TG++++R+ A + PK S K+G ++ E++
Sbjct: 376 KECCRRLRRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIM 434
Query: 333 SDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGIS 154
D AET+E++L + M++D++ L+SLS REK V+R+RFG+E GR +TL +IG+ MG+S
Sbjct: 435 PDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVS 494
Query: 153 RERVRQIESSAFRKLKNKKRNNHLQQYL 70
RER+RQIE AFRKL++KKR LQ YL
Sbjct: 495 RERIRQIELGAFRKLRSKKRVQSLQHYL 522
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 364 bits (932), Expect = 3e-098
Identities = 184/358 (51%), Positives = 258/358 (72%), Gaps = 2/358 (0%)
Frame = -3
Query: 1143 RSTRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSS 964
RS+RQ ER+ARRA+ EK A+S+ ++ T SS + K+ S + +D +R LR SSS
Sbjct: 235 RSSRQMERRARRARASEK-AASVASAISPTRSSRKGKKAISSKGHISDSIRLLR-DWSSS 292
Query: 963 KLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGT 784
+LLTA EE ELS GIQDL+KL+R++A+ E+ G +PT QWA GVDQKTL+ R+ G
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 352
Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
D++I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD ++GFKFSTYA+W
Sbjct: 353 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 412
Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
WI+Q++ K+L++QSR IRLP H+VE+ R++ A + LY E + P EEVAE G+SM R
Sbjct: 413 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 472
Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
L V + P SLD+ +G +++ K SE+++D +E++E I+ K+ ++DLD+VLD+L+
Sbjct: 473 LRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTA 532
Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
REKQV+R R+G++DGRMK+L E+GE +SRERVRQIE A RKL+ R HL+ YL
Sbjct: 533 REKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 364 bits (932), Expect = 3e-098
Identities = 184/358 (51%), Positives = 258/358 (72%), Gaps = 2/358 (0%)
Frame = -3
Query: 1143 RSTRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHNDPLRYLRMTTSSS 964
RS+RQ ER+ARRA+ EK A+S+ ++ T SS + K+ S + +D +R LR SSS
Sbjct: 138 RSSRQMERRARRARASEK-AASVASAISPTRSSRKGKKAISSKGHISDSIRLLR-DWSSS 195
Query: 963 KLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGT 784
+LLTA EE ELS GIQDL+KL+R++A+ E+ G +PT QWA GVDQKTL+ R+ G
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 255
Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
D++I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD ++GFKFSTYA+W
Sbjct: 256 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 315
Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
WI+Q++ K+L++QSR IRLP H+VE+ R++ A + LY E + P EEVAE G+SM R
Sbjct: 316 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 375
Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
L V + P SLD+ +G +++ K SE+++D +E++E I+ K+ ++DLD+VLD+L+
Sbjct: 376 LRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTA 435
Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
REKQV+R R+G++DGRMK+L E+GE +SRERVRQIE A RKL+ R HL+ YL
Sbjct: 436 REKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 935,681,177,451
Number of Sequences: 15229318
Number of Extensions: 935681177451
Number of Successful Extensions: 273114764
Number of sequences better than 0.0: 0
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