BLASTX 7.6.2
Query= UN07972 /QuerySize=1380
(1379 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen... 282 5e-075
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec... 278 6e-074
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb... 217 2e-055
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot... 215 8e-055
sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobac... 213 2e-054
sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobac... 213 2e-054
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri... 212 5e-054
sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB ... 208 1e-052
sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB ... 208 1e-052
sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptosp... 203 3e-051
sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptosp... 203 3e-051
sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Cauloba... 200 2e-050
sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamyd... 200 3e-050
sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA ... 200 4e-050
sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodoba... 196 4e-049
sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobac... 195 7e-049
sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobi... 195 7e-049
sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudom... 192 6e-048
sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Trepone... 191 2e-047
sp|P26480|RPOD_PSEAE RNA polymerase sigma factor rpoD OS=Pseudom... 190 2e-047
>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain
PCC 7120) GN=rpoD PE=3 SV=1
Length = 390
Score = 282 bits (720), Expect = 5e-075
Identities = 143/331 (43%), Positives = 217/331 (65%), Gaps = 3/331 (0%)
Frame = -3
Query: 1056 TGSSSRKKRVASQEIDH--NDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAE 883
+G +++ +R + H D +R +LL A EE EL+ I DLL+LER++
Sbjct: 60 SGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRER 119
Query: 882 LTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMN 703
L+E+ P +WA A + R R+ G + KD+M++SN+RLV+SIAK Y G++
Sbjct: 120 LSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 179
Query: 702 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 523
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E
Sbjct: 180 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 239
Query: 522 YRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPS 343
R+K+ K L E G++P EE+A +++++L + + + P SL+ IG + +
Sbjct: 240 SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 299
Query: 342 EVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 163
+ I + + ET ED + K +REDL+KVLDSLS RE+ V+R R+G++DGRMKTL+EIG+
Sbjct: 300 DFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 358
Query: 162 GISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
++RER+RQIE+ A RKL++ RN+ L++Y+
Sbjct: 359 NVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus
elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 278 bits (711), Expect = 6e-074
Identities = 152/387 (39%), Positives = 235/387 (60%), Gaps = 7/387 (1%)
Frame = -3
Query: 1212 ESEEKQEAEPLEEEEELSVSSAVRSTRQ------TERKARRAKGLEKTASSMQQSVKTTG 1051
E+ Q E L+ + + + A RS+R+ E A + A + SV
Sbjct: 13 EAGMTQATELLDPALKPAETKAKRSSRKKATTAVVEPATTIAPTADVDAIDDEDSVGEDE 72
Query: 1050 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTER 871
++ K + ++ D +R +LL A EE EL+ I DLL LER++ EL E+
Sbjct: 73 DAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQ 132
Query: 870 CGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDL 691
P+ +WA+A R+R+ G + KD+M++SN+RLV+SIAK Y G++ QDL
Sbjct: 133 LDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 192
Query: 690 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 511
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E R+K
Sbjct: 193 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 252
Query: 510 EARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 331
+ K L E G++P EE+A +++++L + + + P SL+ IG + + + I
Sbjct: 253 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 311
Query: 330 DPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISR 151
+ + ET ED + K +REDL+ VL +LS RE+ V+R R+G++DGRMKTL+EIG+ ++R
Sbjct: 312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTR 371
Query: 150 ERVRQIESSAFRKLKNKKRNNHLQQYL 70
ER+RQIE+ A RKL++ RN+ L++Y+
Sbjct: 372 ERIRQIEAKALRKLRHPNRNSILKEYI 398
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Corynebacterium
diphtheriae GN=sigB PE=3 SV=2
Length = 329
Score = 217 bits (551), Expect = 2e-055
Identities = 103/249 (41%), Positives = 159/249 (63%)
Frame = -3
Query: 819 QKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 640
++ L+ + G + + ++++N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 639 TKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNE 460
+KGFKFSTYA WWI+QA+ + ++DQSR IRLP H+VE ++ ++++Y + G++ NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 459 EVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMR 280
E+AE +G+ ++ +L + P SLD +G + + I D EA +E ++
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258
Query: 279 EDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNK 100
D+ VLD+L RE+ VIR R+G++DG +TL +IG G+SRERVRQIE KL++
Sbjct: 259 SDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDG 318
Query: 99 KRNNHLQQY 73
R L+ Y
Sbjct: 319 ARAEKLRAY 327
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermotoga maritima
GN=rpoD PE=1 SV=3
Length = 399
Score = 215 bits (546), Expect = 8e-055
Identities = 104/251 (41%), Positives = 168/251 (66%), Gaps = 1/251 (0%)
Frame = -3
Query: 819 QKTLRKRITHG-TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 643
++ L +R G + K+++I SN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200
Query: 642 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKN 463
KG+KFSTYA WWI+QA+ ++++DQ+R IR+P HMVE ++ R++ Y + G++P
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260
Query: 462 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFM 283
EE+A+ G +++ +L A K SL+ IG + + + ++D + + ++ M
Sbjct: 261 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 320
Query: 282 REDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKN 103
RE+L+KVL +LS RE V+R R+G+ DG+ KTL+E+G+ ++RER+RQIE A RKL++
Sbjct: 321 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380
Query: 102 KKRNNHLQQYL 70
R+ +L+ L
Sbjct: 381 PSRSKYLKSLL 391
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobacterium bovis
GN=rpoD PE=3 SV=1
Length = 528
Score = 213 bits (542), Expect = 2e-054
Identities = 102/240 (42%), Positives = 161/240 (67%)
Frame = -3
Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
G + K+ ++++N+RLV+S+AK Y G GM DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347
Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
WWI+QA+ ++++DQ+R IR+P HMVE ++ +++L + G++P EE+A+ ++
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407
Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
++++ + + P SLDQ IG + + + I D EA + D + +++ L VLD+L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467
Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
S RE V+R RFG+ DG+ +TL EIG+ G++RER+RQIES KL++ R+ L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobacterium
tuberculosis GN=rpoD PE=3 SV=1
Length = 528
Score = 213 bits (542), Expect = 2e-054
Identities = 102/240 (42%), Positives = 161/240 (67%)
Frame = -3
Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
G + K+ ++++N+RLV+S+AK Y G GM DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347
Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
WWI+QA+ ++++DQ+R IR+P HMVE ++ +++L + G++P EE+A+ ++
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407
Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
++++ + + P SLDQ IG + + + I D EA + D + +++ L VLD+L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467
Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
S RE V+R RFG+ DG+ +TL EIG+ G++RER+RQIES KL++ R+ L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostridium
acetobutylicum GN=rpoD PE=3 SV=1
Length = 378
Score = 212 bits (539), Expect = 5e-054
Identities = 103/248 (41%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
Frame = -3
Query: 810 LRKRITHGTQ-CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 634
L +RI +G + + ++ ++N+RLV+SIAK Y G GM DL+QEG GL++ EKFD K
Sbjct: 130 LAQRIKNGDRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKK 189
Query: 633 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEV 454
GFKFSTYA WWI+QA+ ++++DQ+R IR+P HMVE ++ +QL E G++P+ EE+
Sbjct: 190 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEI 249
Query: 453 AEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMRED 274
A+ + + ++ ++ + P SL+ IG + + I D EA D + ++E
Sbjct: 250 AKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQ 309
Query: 273 LDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKR 94
L K+L++L+ RE++V+R RFG++DGR +TL+E+G+ ++RER+RQIE+ A RKL++ R
Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369
Query: 93 NNHLQQYL 70
+ L+ YL
Sbjct: 370 SKKLKDYL 377
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB OS=Streptomyces
coelicolor GN=hrdB PE=3 SV=2
Length = 511
Score = 208 bits (528), Expect = 1e-052
Identities = 101/240 (42%), Positives = 159/240 (66%)
Frame = -3
Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
G + K+ ++++N+RLV+S+AK Y G GM DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
WWI+QA+ ++++DQ+R IR+P HMVE ++ ++Q+ + G++P EE+A+ ++
Sbjct: 331 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 390
Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
++++ V + P SL +G + + + ++I D EA D + ++E L VLD+L
Sbjct: 391 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 450
Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
S RE V+ RFG+ DG+ KTL EIG+ G++RER+RQIES KL++ R+ L+ YL
Sbjct: 451 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 510
>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB OS=Streptomyces
griseus GN=hrdB PE=1 SV=1
Length = 514
Score = 208 bits (528), Expect = 1e-052
Identities = 101/240 (42%), Positives = 159/240 (66%)
Frame = -3
Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
G + K+ ++++N+RLV+S+AK Y G GM DL+QEG GL+R EKFD TKG+KFSTYA
Sbjct: 274 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 333
Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
WWI+QA+ ++++DQ+R IR+P HMVE ++ ++Q+ + G++P EE+A+ ++
Sbjct: 334 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 393
Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
++++ V + P SL +G + + + ++I D EA D + ++E L VLD+L
Sbjct: 394 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 453
Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
S RE V+ RFG+ DG+ KTL EIG+ G++RER+RQIES KL++ R+ L+ YL
Sbjct: 454 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 513
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1
Length = 585
Score = 203 bits (515), Expect = 3e-051
Identities = 97/239 (40%), Positives = 154/239 (64%)
Frame = -3
Query: 786 TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 607
+Q K ++K+N+RLV+SIAK Y GM+ DL+QEG GL++ +KF+ KG+KFSTYA
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404
Query: 606 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMK 427
WWI+QA+ +++SDQ+R IR+P HM+E +V + E G+ P NEE+AE G ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464
Query: 426 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLS 247
++ V + P SL+ +G + + + I D E ET + + E + +VL +L
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524
Query: 246 TREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
RE++VIR RFG++DG +TL+E+G ++RER+RQIE+ A R+L++ R+ L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptospira interrogans
GN=rpoD PE=3 SV=1
Length = 585
Score = 203 bits (515), Expect = 3e-051
Identities = 97/239 (40%), Positives = 154/239 (64%)
Frame = -3
Query: 786 TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 607
+Q K ++K+N+RLV+SIAK Y GM+ DL+QEG GL++ +KF+ KG+KFSTYA
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404
Query: 606 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMK 427
WWI+QA+ +++SDQ+R IR+P HM+E +V + E G+ P NEE+AE G ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464
Query: 426 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLS 247
++ V + P SL+ +G + + + I D E ET + + E + +VL +L
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524
Query: 246 TREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
RE++VIR RFG++DG +TL+E+G ++RER+RQIE+ A R+L++ R+ L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Caulobacter crescentus
GN=rpoD PE=3 SV=1
Length = 652
Score = 200 bits (508), Expect = 2e-050
Identities = 100/249 (40%), Positives = 157/249 (63%)
Frame = -3
Query: 816 KTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAT 637
+T++K Q K M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+
Sbjct: 402 QTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 461
Query: 636 KGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEE 457
+G+KFSTYA WWI+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G++P EE
Sbjct: 462 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE 521
Query: 456 VAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMRE 277
+AE + ++++ VL K P SL+ IG + + I D A D I+ +RE
Sbjct: 522 LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRE 581
Query: 276 DLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKK 97
+VL SL+ RE++V+R RFG+ TL+E+G+ ++RER+RQIE+ A RKLK+
Sbjct: 582 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 641
Query: 96 RNNHLQQYL 70
R+ L+ +L
Sbjct: 642 RSRKLRSFL 650
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae
GN=rpoD PE=3 SV=1
Length = 572
Score = 200 bits (507), Expect = 3e-050
Identities = 97/251 (38%), Positives = 159/251 (63%)
Frame = -3
Query: 822 DQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 643
D + L++ + + K M++SN+RLVISIAK Y G++ DL+QEG GL++ EKF+
Sbjct: 303 DVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFE 362
Query: 642 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKN 463
+G+KFSTYA WWI+QAV ++++DQ+R IR+P HM+E +V K+L ETG++P
Sbjct: 363 YRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTP 422
Query: 462 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFM 283
EE+AE GL+ R+ + + P SL ++G + + D E+ + +
Sbjct: 423 EELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSML 482
Query: 282 REDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKN 103
++ + +VL +L+ RE+ V+ RFG+ DG+ KTL+E+G ++RER+RQIE+ A RK+++
Sbjct: 483 KDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRH 542
Query: 102 KKRNNHLQQYL 70
R+ L+ +L
Sbjct: 543 PIRSKQLRAFL 553
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA OS=Streptomyces
coelicolor GN=hrdA PE=3 SV=2
Length = 396
Score = 200 bits (506), Expect = 4e-050
Identities = 101/247 (40%), Positives = 159/247 (64%)
Frame = -3
Query: 810 LRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKG 631
L + + G K R+I++N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD +G
Sbjct: 149 LDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 208
Query: 630 FKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVA 451
+KFSTYA WWI+QA+ ++L+DQ+R IR+P H+VE RV ++++ E G +P +EVA
Sbjct: 209 YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVA 268
Query: 450 EATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDL 271
L+ +R+ VL + P SL +G ++ ++I D +A + + +R+ L
Sbjct: 269 AHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHL 328
Query: 270 DKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRN 91
+ VL +L RE++V++ R+G+ DGR +TL+EIG G++RER+RQIES KL++
Sbjct: 329 EAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYA 388
Query: 90 NHLQQYL 70
+ L+ YL
Sbjct: 389 DQLRGYL 395
>sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus
GN=rpoD PE=2 SV=1
Length = 674
Score = 196 bits (497), Expect = 4e-049
Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 19/301 (6%)
Frame = -3
Query: 951 AREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRIT------- 793
AR L E +D K+E L+ E+ + GQ+ GVD R+ +
Sbjct: 384 ARAWVTLFEKSRD--KVEDLRHEMAQ-------VGQY---VGVDISEFRRIVNQVQKGEK 431
Query: 792 HGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTY 613
Q K M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTY
Sbjct: 432 EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 491
Query: 612 AHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLS 433
A WWI+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G++P EE+AE +
Sbjct: 492 ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMP 551
Query: 432 MKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDS 253
++++ V+ K P SL+ IG + + + I D A D I++ ++E +VL S
Sbjct: 552 LEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLAS 611
Query: 252 LSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQY 73
L+ RE++V+R RFG+ TL+E+G+ ++RER+RQIE+ A RKLK+ R+ L+ +
Sbjct: 612 LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF 671
Query: 72 L 70
L
Sbjct: 672 L 672
>sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2
Length = 684
Score = 195 bits (495), Expect = 7e-049
Identities = 96/236 (40%), Positives = 151/236 (63%)
Frame = -3
Query: 777 KDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 598
K M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
Query: 597 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLM 418
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G++P EE+AE + ++++
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
Query: 417 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTRE 238
VL K P SL+ +G + + I D A D I+ +RE +VL SL+ RE
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
Query: 237 KQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
++V+R RFG+ TL+E+G+ ++RER+RQIE+ A RKLK+ R+ L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobium meliloti
GN=rpoD PE=3 SV=1
Length = 684
Score = 195 bits (495), Expect = 7e-049
Identities = 96/236 (40%), Positives = 151/236 (63%)
Frame = -3
Query: 777 KDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 598
K M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
Query: 597 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLM 418
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G++P EE+AE + ++++
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
Query: 417 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTRE 238
VL K P SL+ +G + + I D A D I+ +RE +VL SL+ RE
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
Query: 237 KQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
++V+R RFG+ TL+E+G+ ++RER+RQIE+ A RKLK+ R+ L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudomonas
fluorescens GN=rpoD PE=3 SV=1
Length = 615
Score = 192 bits (487), Expect = 6e-048
Identities = 100/283 (35%), Positives = 172/283 (60%), Gaps = 6/283 (2%)
Frame = -3
Query: 903 LERLQAELTERCGHQPTFGQWASAAGVDQ-KTLRKRITHG----TQCKDRMIKSNIRLVI 739
+ RLQ ++ RC + T + + + + K + +R++ G + K M+++N+RLVI
Sbjct: 332 IARLQPDII-RCQQKLTALEVETGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVI 390
Query: 738 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 559
SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R
Sbjct: 391 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 450
Query: 558 MIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLD 379
IR+P HM+E ++ +Q+ E G++P EE+ E + ++ VL K P S++
Sbjct: 451 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISME 510
Query: 378 QKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDG 199
IG + + + I D ++ D+ + ++E +VL L+ RE +V+R RFG++
Sbjct: 511 TPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMN 570
Query: 198 RMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
TL+E+G+ ++RER+RQIE+ A RKL++ R+ HL+ +L
Sbjct: 571 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFL 613
>sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Treponema pallidum
GN=rpoD PE=3 SV=1
Length = 611
Score = 191 bits (483), Expect = 2e-047
Identities = 89/238 (37%), Positives = 153/238 (64%)
Frame = -3
Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
+ KD++I +N+RLV+SIAK Y G+ DLVQEG GL++ EKF+ KG+KFSTYA W
Sbjct: 372 KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATW 431
Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
WI+QA+ +S+SDQ+R IR+P HM+E +V +QL + G++P +EE+A+ ++++
Sbjct: 432 WIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEK 491
Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
+ V + P SL+ IG + + + D + E + + ++E++ +L +L
Sbjct: 492 VKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPA 551
Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
RE +V+R RFG++ +TL+E+G ++RER+RQIE+ A ++L++ + + L+ +L
Sbjct: 552 REHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
>sp|P26480|RPOD_PSEAE RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa
GN=rpoD PE=3 SV=1
Length = 617
Score = 190 bits (482), Expect = 2e-047
Identities = 90/238 (37%), Positives = 151/238 (63%)
Frame = -3
Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
+ K M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA W
Sbjct: 378 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 437
Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
WI+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G++P EE+ E + +
Sbjct: 438 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDK 497
Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
+ VL K P S++ IG + + + I D ++ ++ + ++E +VL L+
Sbjct: 498 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTA 557
Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
RE +V+R RFG++ TL+E+G+ ++RER+RQIE+ A RKL++ R+ HL+ +L
Sbjct: 558 REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFL 615
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,733,448,049
Number of Sequences: 518415
Number of Extensions: 32733448049
Number of Successful Extensions: 231167770
Number of sequences better than 0.0: 0
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