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SwissProt blast output of UN07972


BLASTX 7.6.2

Query= UN07972 /QuerySize=1380
        (1379 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...    282   5e-075
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...    278   6e-074
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb...    217   2e-055
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot...    215   8e-055
sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobac...    213   2e-054
sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobac...    213   2e-054
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri...    212   5e-054
sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB ...    208   1e-052
sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB ...    208   1e-052
sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptosp...    203   3e-051
sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptosp...    203   3e-051
sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Cauloba...    200   2e-050
sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamyd...    200   3e-050
sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA ...    200   4e-050
sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodoba...    196   4e-049
sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobac...    195   7e-049
sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobi...    195   7e-049
sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudom...    192   6e-048
sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Trepone...    191   2e-047
sp|P26480|RPOD_PSEAE RNA polymerase sigma factor rpoD OS=Pseudom...    190   2e-047

>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain
        PCC 7120) GN=rpoD PE=3 SV=1

          Length = 390

 Score =  282 bits (720), Expect = 5e-075
 Identities = 143/331 (43%), Positives = 217/331 (65%), Gaps = 3/331 (0%)
 Frame = -3

Query: 1056 TGSSSRKKRVASQEIDH--NDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAE 883
            +G +++ +R    +  H   D +R         +LL A EE EL+  I DLL+LER++  
Sbjct:   60 SGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRER 119

Query:  882 LTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMN 703
            L+E+    P   +WA A  +     R R+  G + KD+M++SN+RLV+SIAK Y   G++
Sbjct:  120 LSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 179

Query:  702 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 523
             QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E  
Sbjct:  180 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 239

Query:  522 YRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPS 343
             R+K+  K L  E G++P  EE+A    +++++L  +  + + P SL+  IG   + +  
Sbjct:  240 SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 299

Query:  342 EVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 163
            + I + + ET ED + K  +REDL+KVLDSLS RE+ V+R R+G++DGRMKTL+EIG+  
Sbjct:  300 DFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 358

Query:  162 GISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
             ++RER+RQIE+ A RKL++  RN+ L++Y+
Sbjct:  359 NVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus
        elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2

          Length = 399

 Score =  278 bits (711), Expect = 6e-074
 Identities = 152/387 (39%), Positives = 235/387 (60%), Gaps = 7/387 (1%)
 Frame = -3

Query: 1212 ESEEKQEAEPLEEEEELSVSSAVRSTRQ------TERKARRAKGLEKTASSMQQSVKTTG 1051
            E+   Q  E L+   + + + A RS+R+       E     A   +  A   + SV    
Sbjct:   13 EAGMTQATELLDPALKPAETKAKRSSRKKATTAVVEPATTIAPTADVDAIDDEDSVGEDE 72

Query: 1050 SSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTER 871
             ++ K +   ++    D +R         +LL A EE EL+  I DLL LER++ EL E+
Sbjct:   73 DAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQ 132

Query:  870 CGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDL 691
                P+  +WA+A        R+R+  G + KD+M++SN+RLV+SIAK Y   G++ QDL
Sbjct:  133 LDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 192

Query:  690 VQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVK 511
            +QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSR IRLP H+ E   R+K
Sbjct:  193 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 252

Query:  510 EARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVIS 331
            +  K L  E G++P  EE+A    +++++L  +  + + P SL+  IG   + +  + I 
Sbjct:  253 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI- 311

Query:  330 DPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISR 151
            + + ET ED + K  +REDL+ VL +LS RE+ V+R R+G++DGRMKTL+EIG+   ++R
Sbjct:  312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTR 371

Query:  150 ERVRQIESSAFRKLKNKKRNNHLQQYL 70
            ER+RQIE+ A RKL++  RN+ L++Y+
Sbjct:  372 ERIRQIEAKALRKLRHPNRNSILKEYI 398

>sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Corynebacterium
        diphtheriae GN=sigB PE=3 SV=2

          Length = 329

 Score =  217 bits (551), Expect = 2e-055
 Identities = 103/249 (41%), Positives = 159/249 (63%)
 Frame = -3

Query: 819 QKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 640
           ++ L+  +  G + +  ++++N+RLV+S+AK Y G GM L DL+QEG  GL+R  EKFD 
Sbjct:  79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138

Query: 639 TKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNE 460
           +KGFKFSTYA WWI+QA+ + ++DQSR IRLP H+VE   ++   ++++Y + G++  NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198

Query: 459 EVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMR 280
           E+AE +G+   ++  +L   + P SLD  +G +      + I D EA  +E  ++     
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRH 258

Query: 279 EDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNK 100
            D+  VLD+L  RE+ VIR R+G++DG  +TL +IG   G+SRERVRQIE     KL++ 
Sbjct: 259 SDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDG 318

Query:  99 KRNNHLQQY 73
            R   L+ Y
Sbjct: 319 ARAEKLRAY 327

>sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermotoga maritima
        GN=rpoD PE=1 SV=3

          Length = 399

 Score =  215 bits (546), Expect = 8e-055
 Identities = 104/251 (41%), Positives = 168/251 (66%), Gaps = 1/251 (0%)
 Frame = -3

Query: 819 QKTLRKRITHG-TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 643
           ++ L +R   G  + K+++I SN+RLV+SIAK Y G G++ QDL+QEG  GL++  EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200

Query: 642 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKN 463
             KG+KFSTYA WWI+QA+ ++++DQ+R IR+P HMVE   ++   R++ Y + G++P  
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260

Query: 462 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFM 283
           EE+A+  G   +++  +L A K   SL+  IG + +    + ++D    + +   ++  M
Sbjct: 261 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 320

Query: 282 REDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKN 103
           RE+L+KVL +LS RE  V+R R+G+ DG+ KTL+E+G+   ++RER+RQIE  A RKL++
Sbjct: 321 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380

Query: 102 KKRNNHLQQYL 70
             R+ +L+  L
Sbjct: 381 PSRSKYLKSLL 391

>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobacterium bovis
        GN=rpoD PE=3 SV=1

          Length = 528

 Score =  213 bits (542), Expect = 2e-054
 Identities = 102/240 (42%), Positives = 161/240 (67%)
 Frame = -3

Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
           G + K+ ++++N+RLV+S+AK Y G GM   DL+QEG  GL+R  EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347

Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
            WWI+QA+ ++++DQ+R IR+P HMVE   ++   +++L  + G++P  EE+A+   ++ 
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407

Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
           ++++ +    + P SLDQ IG   + +  + I D EA  + D +    +++ L  VLD+L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467

Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           S RE  V+R RFG+ DG+ +TL EIG+  G++RER+RQIES    KL++  R+  L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527

>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobacterium
        tuberculosis GN=rpoD PE=3 SV=1

          Length = 528

 Score =  213 bits (542), Expect = 2e-054
 Identities = 102/240 (42%), Positives = 161/240 (67%)
 Frame = -3

Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
           G + K+ ++++N+RLV+S+AK Y G GM   DL+QEG  GL+R  EKFD TKG+KFSTYA
Sbjct: 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347

Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
            WWI+QA+ ++++DQ+R IR+P HMVE   ++   +++L  + G++P  EE+A+   ++ 
Sbjct: 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407

Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
           ++++ +    + P SLDQ IG   + +  + I D EA  + D +    +++ L  VLD+L
Sbjct: 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467

Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           S RE  V+R RFG+ DG+ +TL EIG+  G++RER+RQIES    KL++  R+  L+ YL
Sbjct: 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527

>sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostridium
        acetobutylicum GN=rpoD PE=3 SV=1

          Length = 378

 Score =  212 bits (539), Expect = 5e-054
 Identities = 103/248 (41%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
 Frame = -3

Query: 810 LRKRITHGTQ-CKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 634
           L +RI +G +  + ++ ++N+RLV+SIAK Y G GM   DL+QEG  GL++  EKFD  K
Sbjct: 130 LAQRIKNGDRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKK 189

Query: 633 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEV 454
           GFKFSTYA WWI+QA+ ++++DQ+R IR+P HMVE   ++    +QL  E G++P+ EE+
Sbjct: 190 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEI 249

Query: 453 AEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMRED 274
           A+   + + ++  ++   + P SL+  IG   +    + I D EA    D    + ++E 
Sbjct: 250 AKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQ 309

Query: 273 LDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKR 94
           L K+L++L+ RE++V+R RFG++DGR +TL+E+G+   ++RER+RQIE+ A RKL++  R
Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369

Query:  93 NNHLQQYL 70
           +  L+ YL
Sbjct: 370 SKKLKDYL 377

>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB OS=Streptomyces
        coelicolor GN=hrdB PE=3 SV=2

          Length = 511

 Score =  208 bits (528), Expect = 1e-052
 Identities = 101/240 (42%), Positives = 159/240 (66%)
 Frame = -3

Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
           G + K+ ++++N+RLV+S+AK Y G GM   DL+QEG  GL+R  EKFD TKG+KFSTYA
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330

Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
            WWI+QA+ ++++DQ+R IR+P HMVE   ++   ++Q+  + G++P  EE+A+   ++ 
Sbjct: 331 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 390

Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
           ++++ V    + P SL   +G + + +  ++I D EA    D +    ++E L  VLD+L
Sbjct: 391 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 450

Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           S RE  V+  RFG+ DG+ KTL EIG+  G++RER+RQIES    KL++  R+  L+ YL
Sbjct: 451 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 510

>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB OS=Streptomyces
        griseus GN=hrdB PE=1 SV=1

          Length = 514

 Score =  208 bits (528), Expect = 1e-052
 Identities = 101/240 (42%), Positives = 159/240 (66%)
 Frame = -3

Query: 789 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 610
           G + K+ ++++N+RLV+S+AK Y G GM   DL+QEG  GL+R  EKFD TKG+KFSTYA
Sbjct: 274 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 333

Query: 609 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSM 430
            WWI+QA+ ++++DQ+R IR+P HMVE   ++   ++Q+  + G++P  EE+A+   ++ 
Sbjct: 334 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 393

Query: 429 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 250
           ++++ V    + P SL   +G + + +  ++I D EA    D +    ++E L  VLD+L
Sbjct: 394 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 453

Query: 249 STREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           S RE  V+  RFG+ DG+ KTL EIG+  G++RER+RQIES    KL++  R+  L+ YL
Sbjct: 454 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 513

>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptospira interrogans
        serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1

          Length = 585

 Score =  203 bits (515), Expect = 3e-051
 Identities = 97/239 (40%), Positives = 154/239 (64%)
 Frame = -3

Query: 786 TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 607
           +Q K  ++K+N+RLV+SIAK Y   GM+  DL+QEG  GL++  +KF+  KG+KFSTYA 
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404

Query: 606 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMK 427
           WWI+QA+ +++SDQ+R IR+P HM+E   +V    +    E G+ P NEE+AE  G  ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464

Query: 426 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLS 247
           ++  V    + P SL+  +G   + +  + I D E ET  +      + E + +VL +L 
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524

Query: 246 TREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
            RE++VIR RFG++DG  +TL+E+G    ++RER+RQIE+ A R+L++  R+  L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583

>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptospira interrogans
        GN=rpoD PE=3 SV=1

          Length = 585

 Score =  203 bits (515), Expect = 3e-051
 Identities = 97/239 (40%), Positives = 154/239 (64%)
 Frame = -3

Query: 786 TQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 607
           +Q K  ++K+N+RLV+SIAK Y   GM+  DL+QEG  GL++  +KF+  KG+KFSTYA 
Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYAT 404

Query: 606 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMK 427
           WWI+QA+ +++SDQ+R IR+P HM+E   +V    +    E G+ P NEE+AE  G  ++
Sbjct: 405 WWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQ 464

Query: 426 RLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLS 247
           ++  V    + P SL+  +G   + +  + I D E ET  +      + E + +VL +L 
Sbjct: 465 KVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLP 524

Query: 246 TREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
            RE++VIR RFG++DG  +TL+E+G    ++RER+RQIE+ A R+L++  R+  L+ Y+
Sbjct: 525 AREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583

>sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Caulobacter crescentus
        GN=rpoD PE=3 SV=1

          Length = 652

 Score =  200 bits (508), Expect = 2e-050
 Identities = 100/249 (40%), Positives = 157/249 (63%)
 Frame = -3

Query: 816 KTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAT 637
           +T++K      Q K  M+++N+RLVISIAK Y   G+   DL+QEG  GL++  +KF+  
Sbjct: 402 QTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 461

Query: 636 KGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEE 457
           +G+KFSTYA WWI+QA+ +S++DQ+R IR+P HM+E   ++    +Q+  E G++P  EE
Sbjct: 462 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE 521

Query: 456 VAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMRE 277
           +AE   + ++++  VL   K P SL+  IG   +    + I D  A    D  I+  +RE
Sbjct: 522 LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRE 581

Query: 276 DLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKK 97
              +VL SL+ RE++V+R RFG+      TL+E+G+   ++RER+RQIE+ A RKLK+  
Sbjct: 582 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 641

Query:  96 RNNHLQQYL 70
           R+  L+ +L
Sbjct: 642 RSRKLRSFL 650

>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae
        GN=rpoD PE=3 SV=1

          Length = 572

 Score =  200 bits (507), Expect = 3e-050
 Identities = 97/251 (38%), Positives = 159/251 (63%)
 Frame = -3

Query: 822 DQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 643
           D + L++ +    + K  M++SN+RLVISIAK Y   G++  DL+QEG  GL++  EKF+
Sbjct: 303 DVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFE 362

Query: 642 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKN 463
             +G+KFSTYA WWI+QAV ++++DQ+R IR+P HM+E   +V    K+L  ETG++P  
Sbjct: 363 YRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTP 422

Query: 462 EEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFM 283
           EE+AE  GL+  R+  +    + P SL  ++G        + + D   E+  +      +
Sbjct: 423 EELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSML 482

Query: 282 REDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKN 103
           ++ + +VL +L+ RE+ V+  RFG+ DG+ KTL+E+G    ++RER+RQIE+ A RK+++
Sbjct: 483 KDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRH 542

Query: 102 KKRNNHLQQYL 70
             R+  L+ +L
Sbjct: 543 PIRSKQLRAFL 553

>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA OS=Streptomyces
        coelicolor GN=hrdA PE=3 SV=2

          Length = 396

 Score =  200 bits (506), Expect = 4e-050
 Identities = 101/247 (40%), Positives = 159/247 (64%)
 Frame = -3

Query: 810 LRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKG 631
           L + +  G   K R+I++N+RLV+S+AK Y G G+ + DLVQEG  GL+R  EKFD  +G
Sbjct: 149 LDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 208

Query: 630 FKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVA 451
           +KFSTYA WWI+QA+ ++L+DQ+R IR+P H+VE   RV   ++++  E G +P  +EVA
Sbjct: 209 YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVA 268

Query: 450 EATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDL 271
               L+ +R+  VL   + P SL   +G   ++   ++I D +A +  +      +R+ L
Sbjct: 269 AHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHL 328

Query: 270 DKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRN 91
           + VL +L  RE++V++ R+G+ DGR +TL+EIG   G++RER+RQIES    KL++    
Sbjct: 329 EAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYA 388

Query:  90 NHLQQYL 70
           + L+ YL
Sbjct: 389 DQLRGYL 395

>sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus
        GN=rpoD PE=2 SV=1

          Length = 674

 Score =  196 bits (497), Expect = 4e-049
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 19/301 (6%)
 Frame = -3

Query: 951 AREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRIT------- 793
           AR    L E  +D  K+E L+ E+ +        GQ+    GVD    R+ +        
Sbjct: 384 ARAWVTLFEKSRD--KVEDLRHEMAQ-------VGQY---VGVDISEFRRIVNQVQKGEK 431

Query: 792 HGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTY 613
              Q K  M+++N+RLVISIAK Y   G+   DL+QEG  GL++  +KF+  +G+KFSTY
Sbjct: 432 EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 491

Query: 612 AHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLS 433
           A WWI+QA+ +S++DQ+R IR+P HM+E   ++    +Q+  E G++P  EE+AE   + 
Sbjct: 492 ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMP 551

Query: 432 MKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDS 253
           ++++  V+   K P SL+  IG   + +  + I D  A    D  I++ ++E   +VL S
Sbjct: 552 LEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLAS 611

Query: 252 LSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQY 73
           L+ RE++V+R RFG+      TL+E+G+   ++RER+RQIE+ A RKLK+  R+  L+ +
Sbjct: 612 LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF 671

Query:  72 L 70
           L
Sbjct: 672 L 672

>sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobacterium
        tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2

          Length = 684

 Score =  195 bits (495), Expect = 7e-049
 Identities = 96/236 (40%), Positives = 151/236 (63%)
 Frame = -3

Query: 777 KDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 598
           K  M+++N+RLVISIAK Y   G+   DL+QEG  GL++  +KF+  +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506

Query: 597 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLM 418
           +QA+ +S++DQ+R IR+P HM+E   ++    +Q+  E G++P  EE+AE   + ++++ 
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566

Query: 417 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTRE 238
            VL   K P SL+  +G   +    + I D  A    D  I+  +RE   +VL SL+ RE
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626

Query: 237 KQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           ++V+R RFG+      TL+E+G+   ++RER+RQIE+ A RKLK+  R+  L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682

>sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobium meliloti
        GN=rpoD PE=3 SV=1

          Length = 684

 Score =  195 bits (495), Expect = 7e-049
 Identities = 96/236 (40%), Positives = 151/236 (63%)
 Frame = -3

Query: 777 KDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 598
           K  M+++N+RLVISIAK Y   G+   DL+QEG  GL++  +KF+  +G+KFSTYA WWI
Sbjct: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506

Query: 597 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLM 418
           +QA+ +S++DQ+R IR+P HM+E   ++    +Q+  E G++P  EE+AE   + ++++ 
Sbjct: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566

Query: 417 AVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTRE 238
            VL   K P SL+  +G   +    + I D  A    D  I+  +RE   +VL SL+ RE
Sbjct: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626

Query: 237 KQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           ++V+R RFG+      TL+E+G+   ++RER+RQIE+ A RKLK+  R+  L+ +L
Sbjct: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682

>sp|P52326|RPOD_PSEFL RNA polymerase sigma factor rpoD OS=Pseudomonas
        fluorescens GN=rpoD PE=3 SV=1

          Length = 615

 Score =  192 bits (487), Expect = 6e-048
 Identities = 100/283 (35%), Positives = 172/283 (60%), Gaps = 6/283 (2%)
 Frame = -3

Query: 903 LERLQAELTERCGHQPTFGQWASAAGVDQ-KTLRKRITHG----TQCKDRMIKSNIRLVI 739
           + RLQ ++  RC  + T  +  +   + + K + +R++ G     + K  M+++N+RLVI
Sbjct: 332 IARLQPDII-RCQQKLTALEVETGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVI 390

Query: 738 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 559
           SIAK Y   G+   DL+QEG  GL++  +KF+  +G+KFSTYA WWI+QA+ +S++DQ+R
Sbjct: 391 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 450

Query: 558 MIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLD 379
            IR+P HM+E   ++    +Q+  E G++P  EE+ E   +   ++  VL   K P S++
Sbjct: 451 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISME 510

Query: 378 QKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDG 199
             IG + +    + I D   ++  D+   + ++E   +VL  L+ RE +V+R RFG++  
Sbjct: 511 TPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMN 570

Query: 198 RMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
              TL+E+G+   ++RER+RQIE+ A RKL++  R+ HL+ +L
Sbjct: 571 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFL 613

>sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Treponema pallidum
        GN=rpoD PE=3 SV=1

          Length = 611

 Score =  191 bits (483), Expect = 2e-047
 Identities = 89/238 (37%), Positives = 153/238 (64%)
 Frame = -3

Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
           + KD++I +N+RLV+SIAK Y   G+   DLVQEG  GL++  EKF+  KG+KFSTYA W
Sbjct: 372 KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATW 431

Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
           WI+QA+ +S+SDQ+R IR+P HM+E   +V    +QL  + G++P +EE+A+    ++++
Sbjct: 432 WIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEK 491

Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
           +  V    + P SL+  IG   +    + + D + E    +  +  ++E++  +L +L  
Sbjct: 492 VKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPA 551

Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           RE +V+R RFG++    +TL+E+G    ++RER+RQIE+ A ++L++ + +  L+ +L
Sbjct: 552 REHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFL 609

>sp|P26480|RPOD_PSEAE RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa
        GN=rpoD PE=3 SV=1

          Length = 617

 Score =  190 bits (482), Expect = 2e-047
 Identities = 90/238 (37%), Positives = 151/238 (63%)
 Frame = -3

Query: 783 QCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 604
           + K  M+++N+RLVISIAK Y   G+   DL+QEG  GL++  +KF+  +G+KFSTYA W
Sbjct: 378 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 437

Query: 603 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLSMKR 424
           WI+QA+ +S++DQ+R IR+P HM+E   ++    +Q+  E G++P  EE+ E   +   +
Sbjct: 438 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDK 497

Query: 423 LMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLST 244
           +  VL   K P S++  IG + +    + I D   ++  ++   + ++E   +VL  L+ 
Sbjct: 498 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTA 557

Query: 243 REKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
           RE +V+R RFG++     TL+E+G+   ++RER+RQIE+ A RKL++  R+ HL+ +L
Sbjct: 558 REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFL 615

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,733,448,049
Number of Sequences: 518415
Number of Extensions: 32733448049
Number of Successful Extensions: 231167770
Number of sequences better than 0.0: 0