BLASTX 7.6.2
Query= UN07972 /QuerySize=1380
(1379 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, AT... 662 2e-190
TAIR9_protein||AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT... 255 8e-068
TAIR9_protein||AT3G53920.1 | Symbols: SIGC, SIG3 | SIGC (RNA POL... 210 2e-054
TAIR9_protein||AT5G13730.1 | Symbols: SIG4, SIGD | SIG4 (SIGMA F... 191 8e-049
TAIR9_protein||AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RP... 173 4e-043
TAIR9_protein||AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | SIGE ... 150 3e-036
>TAIR9_protein||AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1,
ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding /
DNA-directed RNA polymerase/ sigma factor/ transcription factor |
chr1:2703461-2706696 FORWARD
Length = 573
Score = 662 bits (1706), Expect = 2e-190
Identities = 344/392 (87%), Positives = 364/392 (92%), Gaps = 4/392 (1%)
Frame = -3
Query: 1236 NKESSDDLESEEKQEAEPLEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKT 1057
NKES DLESE+++E E LEE+ SVS AVRSTRQTERKARRAKGLEKTAS + SVK
Sbjct: 184 NKESIGDLESEKQEEVELLEEQP--SVSLAVRSTRQTERKARRAKGLEKTASGI-PSVK- 239
Query: 1056 TGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELT 877
TGSS +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT REE ELS GIQDLLKLERLQ ELT
Sbjct: 240 TGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 876 ERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQ 697
ER G QPTF QWASAAGVDQK+LR+RI HGT CKD+MIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 300 ERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 696 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 517
DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR
Sbjct: 360 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 419
Query: 516 VKEARKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEV 337
VKEARKQLYSETG+ PKNEE+AEATGLSMKRLMAVLL+PKPPRSLDQKIG+N NLKPSEV
Sbjct: 420 VKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV 479
Query: 336 ISDPEAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGI 157
I+DPEA TSEDILIK+FMR+DLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE MG+
Sbjct: 480 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 156 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 61
SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ
Sbjct: 540 SRERVRQIESSAFRKLKNKKRNNHLQQYLVAQ 571
>TAIR9_protein||AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA
POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/
sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Length = 548
Score = 255 bits (649), Expect = 8e-068
Identities = 144/384 (37%), Positives = 223/384 (58%), Gaps = 13/384 (3%)
Frame = -3
Query: 1194 EAEPLEE-EEELSVSSA---------VRSTRQTERKARRAKGLEKTASSMQQSVKTTGSS 1045
EA P + ++ LS SS+ VRS RQ ER+A+ + + + V S+
Sbjct: 162 EANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSA 221
Query: 1044 SRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTERCG 865
+K + Q D++D L+ + +LLTA+EE EL IQ LLKLE+++ +L + G
Sbjct: 222 KKKYK---QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNG 278
Query: 864 HQPTFGQWASAAGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQ 685
+PT G+WA A G+ L+ I G ++++I +N+RLV+ IAK YQ G+N QDL+Q
Sbjct: 279 CEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
Query: 684 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEA 505
EG GL++ EKF G +F+TYA+WWI+Q++RKS+ SR IRLP ++ +V EA
Sbjct: 339 EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 398
Query: 504 RKQLYSETGQQPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDP 325
RK E +P EE+A G+S ++L +L + P S+ Q I + + E+ D
Sbjct: 399 RKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDS 458
Query: 324 EAETSEDILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRER 145
ET + KQ MR + +L+ LS +E+++I+ RFG++ G+ ++L EIGE G+S+ER
Sbjct: 459 GIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 518
Query: 144 VRQIESSAFRKLKNKKRNNHLQQY 73
VRQ+ES A +LK ++ L Y
Sbjct: 519 VRQLESRALYRLKQNMNSHGLHAY 542
>TAIR9_protein||AT3G53920.1 | Symbols: SIGC, SIG3 | SIGC (RNA POLYMERASE
SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma
factor/ transcription factor | chr3:19961041-19963820 REVERSE
Length = 572
Score = 210 bits (534), Expect = 2e-054
Identities = 105/295 (35%), Positives = 187/295 (63%), Gaps = 1/295 (0%)
Frame = -3
Query: 951 AREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRITHGTQCKD 772
+R ETE+S G++ + +ER++ +L E G + WA+AAG+++K L + + +G C+D
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334
Query: 771 RMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 592
++KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD T+G+KFSTY +WI++
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 591 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETG-QQPKNEEVAEATGLSMKRLMA 415
++ +S +R + +P ++ +++ARK L + G + +EE+A+ TG S+K++ A
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRA 454
Query: 414 VLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSLSTREK 235
K S+D+K+G K E D E+ E+ +++Q R D+ +L+ L REK
Sbjct: 455 ANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514
Query: 234 QVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQYL 70
QV+ R+G++D R K+L+EIG+ + +S+E +R+IE A KL+++ L+ YL
Sbjct: 515 QVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>TAIR9_protein||AT5G13730.1 | Symbols: SIG4, SIGD | SIG4 (SIGMA FACTOR 4); DNA
binding / DNA-directed RNA polymerase/ sigma factor/ transcription
factor | chr5:4429132-4430744 REVERSE
Length = 420
Score = 191 bits (485), Expect = 8e-049
Identities = 104/300 (34%), Positives = 178/300 (59%), Gaps = 3/300 (1%)
Frame = -3
Query: 972 SSSKLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGVDQKTLRKRIT 793
S S L+ EE +L +++ KLE L + E ++ AS G +++ + +
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 174
Query: 792 HGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTY 613
+ ++++ + RLV+SIA YQG G+NLQDL+QEG GL+RGAE+FD +G+K STY
Sbjct: 175 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 234
Query: 612 AHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQPKNEEVAEATGLS 433
+WWIKQA+ ++++ +SR+++LP M E T +V EA L + +QP EE+AE L+
Sbjct: 235 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 294
Query: 432 MKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDS 253
+ + + + P SLD+ N + E++ P+ E+++ ++ M+ +++++L S
Sbjct: 295 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 354
Query: 252 LSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRKLKNKKRNNHLQQY 73
L+ RE +V+ FG+ + +EIG+++ +SRERVRQI A +KL+N N L+ Y
Sbjct: 355 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
>TAIR9_protein||AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | SIGA
(SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma
factor/ transcription factor | chr1:24098497-24100746 FORWARD
Length = 503
Score = 173 bits (436), Expect = 4e-043
Identities = 119/385 (30%), Positives = 200/385 (51%), Gaps = 19/385 (4%)
Frame = -3
Query: 1182 LEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRV---ASQEI 1012
LE+ LS AV S + R+ K T S + + G+ + A ++
Sbjct: 122 LEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSDV 181
Query: 1011 DHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASA 832
+R S +L+ E LS+ I+ L+L+ ++ L +R G +P+ Q A +
Sbjct: 182 SSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVS 241
Query: 831 AGVDQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 652
+ + L+ + ++++ SN+RLV+SIA+ Y G + DLVQ G GL+RG E
Sbjct: 242 LKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIE 301
Query: 651 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQ 472
KFD++KGF+ STY +WWI+Q V ++L D SR +RLP H+ E ++ A+ +L E G
Sbjct: 302 KFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGIT 360
Query: 471 PKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEV----ISDPEAETS-- 310
P + +AE+ +S K++ A SLD+ +LN P E I+D E +
Sbjct: 361 PSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPW 420
Query: 309 ---EDILIKQFMREDLDKVLD-SLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERV 142
+D+ +K E++ K++ +L REK++IR +G+ D T ++I + +G+SRERV
Sbjct: 421 HGYDDLALK----EEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERV 475
Query: 141 RQIESSAFRKLKNKKRNNHLQQYLV 67
RQ+ A KLK+ R ++ ++
Sbjct: 476 RQVGLVALEKLKHAARKRKMEAMIL 500
>TAIR9_protein||AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR
E); DNA binding / DNA-directed RNA polymerase/ sigma factor/
transcription factor | chr5:8157794-8159746 REVERSE
Length = 518
Score = 150 bits (377), Expect = 3e-036
Identities = 105/375 (28%), Positives = 185/375 (49%), Gaps = 12/375 (3%)
Frame = -3
Query: 1182 LEEEEELSVSSAVRSTRQTERKARRAKGLEKTASSMQQSVKTTGSSSRKKRVASQEIDHN 1003
+++E+ +S+ + R + K A +K Q+ K +R+ N
Sbjct: 152 VKKEKRMSLDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKI-------ERLVRDYSASN 204
Query: 1002 DPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQAELTERCGHQPTFGQWASAAGV 823
D + +L++ E L + +Q + L ++ L + G +P + A +
Sbjct: 205 DIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINM 264
Query: 822 DQKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGA---GMNLQDLVQEGCRGLVRGAE 652
++K+I G ++++IK N+RLV+ + Y G QDL Q G RGL+ +
Sbjct: 265 TAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAID 324
Query: 651 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQQ 472
+F+ + F+ STY +WI+ A+ +S++ S R+PF + + +A+ +L+ E G+
Sbjct: 325 RFEPKRKFRLSTYGLFWIRHAIIRSMT-TSNFTRVPFGLESVRVEIYKAKTELWFEMGRP 383
Query: 471 PKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIK 292
P +EV E ++ +R VL A KP SL+ K + + I+D + + +
Sbjct: 384 PTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQE-EFINGITDVDGVGANNSRQP 442
Query: 291 QFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGISRERVRQIESSAFRK 112
+R LD VLDSL +E VIR R+G++ +TL EI + ISRE VR+ E A K
Sbjct: 443 ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMK 502
Query: 111 LKNKKRNNHLQQYLV 67
LK++ R ++L+QY+V
Sbjct: 503 LKHQARVDYLRQYIV 517
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,626,902,262
Number of Sequences: 33410
Number of Extensions: 4626902262
Number of Successful Extensions: 173967028
Number of sequences better than 0.0: 0
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