BLASTX 7.6.2

Query= UN08352 /QuerySize=1354
        (1353 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA...    722   1e-208
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP...    205   6e-053

>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
        BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
        chr3:23327006-23328620 REVERSE

          Length = 407

 Score =  722 bits (1863), Expect = 1e-208
 Identities = 371/408 (90%), Positives = 385/408 (94%), Gaps = 6/408 (1%)
 Frame = +1

Query:   28 MAALSSSSLFFSSKTAIPINNLTLIPPSLHRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 204
            MAALSSSSLFFSSKT  PI+NL LIPPSLHRFSLPSSSSSFSSL SSSSS+S   T SL+
Sbjct:    1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59

Query:  205 SSRRSSPQGFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 372
            +SRR SPQ FTVKA    EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct:   60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119

Query:  373 SDKMKKPPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 552
            S+KMKKPPF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct:  120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179

Query:  553 KSSGVKQFLFISSAGIYKSTEEPPHVEGDAVKGDAGHVGVEKYLAETFANWASFRPQYMI 732
            KSSGVKQFLFISSAGIYKSTE+PPHVEGDAVK DAGHV VEKYLAETF NWASFRPQYMI
Sbjct:  180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 239

Query:  733 GSGNNKDCEEWFFDRIVRDRPVPIPGSGLQLTNISHVRDLSSMLTSAVSNPDAASCNIFN 912
            GSGNNKDCEEWFFDRIVRDR VPIPGSGLQLTNISHVRDLSSMLTSAV+NP+AAS NIFN
Sbjct:  240 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 299

Query:  913 CLSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFPFRNMHFYAEPRAAKDKL 1092
            C+SDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAF FRNMHFYAEPRAAKD L
Sbjct:  300 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLL 359

Query: 1093 GWESKTNLPEDLKERFEEYVKIGRDKKEMKFELDDKILEALKTPVAA* 1236
            GWESKTNLPEDLKERFEEYVKIGRDKKE+KFELDDKILEALKTPVAA*
Sbjct:  360 GWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA* 407

>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
        BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
        FORWARD

          Length = 379

 Score =  205 bits (521), Expect = 6e-053
 Identities = 133/370 (35%), Positives = 194/370 (52%), Gaps = 21/370 (5%)
 Frame = +1

Query:  130 PSSSSSFSSLSSSSSASLFTTHSLKSSRRSSPQG--FTVKAEKKNVLIVNTNSGGHAVIG 303
            PS S   SSLS  + A L      K  +   P+G  +   + +K +LI+    GG   IG
Sbjct:   12 PSFSLLTSSLSDFNGAKLHLQVQYK-RKVHQPKGALYVSASSEKKILIM----GGTRFIG 66

Query:  304 FYFAKELLSAGHAVTIMTVGEESSDKMKKPPFSRFSEIVSGGGKTVW--GNPAD---VAT 468
             + ++ L+  GH VT+ T G+  S   K+ P     +      K +   G+  D   V +
Sbjct:   67 LFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKS 124

Query:  469 VVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEEPPHVEGDAVK 648
             +  E FDVV D NG++ + V P+++      ++Q+++ SSAG+Y  ++  PH E DAV 
Sbjct:  125 SLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCSSAGVYLKSDILPHCEEDAVD 182

Query:  649 GDAGHVG---VEKYLAETFANWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGL 819
              + H G    E  L     NW S RP Y+ G  N    EEWFF R+   RP+P+P SG+
Sbjct:  183 PKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGI 242

Query:  820 QLTNISHVRDLSSMLTSAVSNPDAASCNIFNCLSDRAVTLDGMAKLCAAAAG-KTVEIVH 996
            Q++ + HV+DL++   + + N + AS  IFN   ++ VT DG+AK CA A G    EIVH
Sbjct:  243 QISQLGHVKDLATAFLNVLGN-EKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVH 301

Query:  997 YDPKAIGVDAKKAFPFRNMHFYAEPRAAKDKLGWESKTNLPEDLKERFEEYVKIGRDKKE 1176
            Y+PK      KKAFPFR+ HF+A    AK  LGW+ + +L E L + +      G  +KE
Sbjct:  302 YNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKE 361

Query: 1177 MKFELDDKIL 1206
              F  DD IL
Sbjct:  362 ADFTTDDMIL 371

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,760,199,660
Number of Sequences: 33410
Number of Extensions: 4760199660
Number of Successful Extensions: 173999632
Number of sequences better than 0.0: 0