BLASTX 7.6.2
Query= UN08566 /QuerySize=729
(728 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bo... 180 1e-044
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Ho... 180 1e-044
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mu... 180 1e-044
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm... 178 6e-044
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm... 166 2e-040
sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm... 160 9e-039
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm... 134 5e-031
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Sa... 109 2e-023
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragme... 52 3e-006
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus
GN=SNRPD2 PE=3 SV=1
Length = 118
Score = 180 bits (455), Expect = 1e-044
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = -1
Query: 632 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 459
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 458 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens
GN=SNRPD2 PE=1 SV=1
Length = 118
Score = 180 bits (455), Expect = 1e-044
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = -1
Query: 632 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 459
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 458 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus
GN=Snrpd2 PE=2 SV=1
Length = 118
Score = 180 bits (455), Expect = 1e-044
Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = -1
Query: 632 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 459
+++P E T + K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHC 63
Query: 458 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
NMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1
Length = 119
Score = 178 bits (449), Expect = 6e-044
Identities = 86/108 (79%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Frame = -1
Query: 626 RPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 453
+P E T + + EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNM
Sbjct: 5 KPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 64
Query: 452 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
VLENV+EMWTE+P+TGKGKKK PVN+DRFISKMFLRGDSVI+VLRNP
Sbjct: 65 VLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 166 bits (418), Expect = 2e-040
Identities = 81/109 (74%), Positives = 93/109 (85%), Gaps = 2/109 (1%)
Frame = -1
Query: 629 SRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCN 456
++P E T + E+EEFN GPLS+L SVKNN QVLINCRNN+KLLGRV+AFDRHCN
Sbjct: 5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCN 64
Query: 455 MVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
MVLENV+EMWTEVPKTGKGKKKA V +DRFISKMFLRGDSVI+V++NP
Sbjct: 65 MVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2
OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 160 bits (404), Expect = 9e-039
Identities = 77/104 (74%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Frame = -1
Query: 620 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 441
M ++T + K ++ + GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 4 MNDETMEDKPDD---SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 440 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
V+E+WTEVPKT KGKKKA P+N+DRFISKMFLRGDSVI+VL+NP
Sbjct: 61 VKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1
Length = 115
Score = 134 bits (337), Expect = 5e-031
Identities = 65/96 (67%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Frame = -1
Query: 596 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 417
+ EE EF+ GPLSVL +VKN+ QVLINCRNN+KLL RV+AFDRH NMVLENV+EMWTE
Sbjct: 19 RLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEK 78
Query: 416 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
+T G KK +N+DRFISKMFLRGD V++V+R P
Sbjct: 79 KRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces
cerevisiae GN=SMD2 PE=1 SV=2
Length = 110
Score = 109 bits (271), Expect = 2e-023
Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 7/94 (7%)
Frame = -1
Query: 590 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 411
EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 410 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 309
KK +NR+RFISK+FLRGDSVI+VL+ P
Sbjct: 79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus
scrofa GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 52 bits (124), Expect = 3e-006
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = -1
Query: 632 MSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNR 498
+++P E T + K EEEEFNTGPLSV S K TQVLINCRN +
Sbjct: 4 LNKPKSEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,801,685,782
Number of Sequences: 518415
Number of Extensions: 36801685782
Number of Successful Extensions: 258262551
Number of sequences better than 0.0: 0
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