BLASTX 7.6.2
Query= UN08723 /QuerySize=1470
(1469 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G38560.1 | Symbols: TFIIS | TFIIS (TRANSCRIPT ... 354 1e-097
TAIR9_protein||AT2G42730.1 | Symbols: | F-box family protein | ... 123 3e-028
TAIR9_protein||AT4G18720.1 | Symbols: | transcription elongatio... 112 5e-025
TAIR9_protein||AT2G13640.1 | Symbols: | Golgi GDP mannose trans... 73 5e-013
TAIR9_protein||AT5G27310.1 | Symbols: | FUNCTIONS IN: molecular... 65 8e-011
TAIR9_protein||AT5G42325.1 | Symbols: | transcription elongatio... 64 2e-010
TAIR9_protein||AT2G27780.1 | Symbols: | FUNCTIONS IN: molecular... 64 3e-010
TAIR9_protein||AT2G33090.1 | Symbols: | FUNCTIONS IN: molecular... 55 1e-007
TAIR9_protein||AT2G33300.1 | Symbols: | FUNCTIONS IN: molecular... 55 1e-007
TAIR9_protein||AT2G32820.1 | Symbols: | INVOLVED IN: transcript... 52 9e-007
>TAIR9_protein||AT2G38560.1 | Symbols: TFIIS | TFIIS (TRANSCRIPT ELONGATION
FACTOR IIS); DNA binding / RNA polymerase II transcription elongation
factor/ transcription factor | chr2:16134802-16136319 FORWARD
Length = 379
Score = 354 bits (907), Expect = 1e-097
Identities = 183/261 (70%), Positives = 207/261 (79%), Gaps = 17/261 (6%)
Frame = -2
Query: 982 ETSKSKKDANPAPVKVQKLQRGDS-AKSIKVERKEP---VNNGVKIEHRGQTGVKDE--- 824
+ K ++ + +KV++ + + +K+ERK P V NG KI++RGQ VKDE
Sbjct: 122 KVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQ-AVKDEKVS 180
Query: 823 -------KAPAKAPPTNGAPKLTAMVKCNDPVRDKIRELLVDAMSKVHDESDDYDRARVV 665
KAPAKA N PKLTAM+KCNDPVRDKIRELLV+A+ +V E+DDY+R V
Sbjct: 181 KDNQSSMKAPAKA--ANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVN 238
Query: 664 GCDPIRVAVAVESHMFEKLGRSTGAQKVKYRSIMFNLRDSNNPDLRRRVLTGEVSPEKLI 485
DP+RVAV+VES MFEKLGRSTGAQK+KYRSIMFNLRDSNNPDLRRRVLTGE+SPEKLI
Sbjct: 239 ASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLI 298
Query: 484 TLSGEEMASDKRKQETNQIKEKFLFDCERGQAPKASTDQFKCGRCGQRKCTYYQMQTRSA 305
TLS E+MASDKRKQE NQIKEK LFDCERG A KASTDQFKCGRCGQRKCTYYQMQTRSA
Sbjct: 299 TLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSA 358
Query: 304 DEPMTTYVTCVNCDNHWKFC* 242
DEPMTTYVTCVNCDNHWKFC*
Sbjct: 359 DEPMTTYVTCVNCDNHWKFC* 379
Score = 166 bits (418), Expect = 5e-041
Identities = 91/164 (55%), Positives = 119/164 (72%), Gaps = 12/164 (7%)
Frame = -2
Query: 1246 MESELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKL 1067
MES+L++LFE AKKAADAAA+DGV SSGPEVS+ +DALKQLKKFP+TYD LVATQVGKKL
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 1066 RSLSKHPIDEIKTVATDLLDIWKKLVIEETSKSKKDANPAPVKVQKLQRGDSAK-----S 902
RSL+KHP+++IK+VATDLL+IWKK+VIEET+K+KK K K+ + D K
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120
Query: 901 IKVERKEPVNN--GVKIEHRGQ-----TGVKDEKAPAKAPPTNG 791
+KV++ + ++ +K+E + TGVK E+ TNG
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNG 164
>TAIR9_protein||AT2G42730.1 | Symbols: | F-box family protein |
chr2:17787454-17791218 REVERSE
Length = 738
Score = 123 bits (308), Expect = 3e-028
Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Frame = -2
Query: 787 PKLTAMVKCNDPVRDKIRELLVDAMSKVHDESDDYD-RARVVGCDPIRVAVAVESHMFEK 611
P + M K D RDK+RE+L ++ KV E D + + RV CDP VAV+VES MFEK
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653
Query: 610 LGRSTGAQKVKYRSIMFNLRDSNNPDLRRRVLTGEVSPEKLITLSGEEMASDKRKQETNQ 431
LG G K KYRSI+FN+ DSNNPDLRR+VL GE++ E+L+T+ +EM S+K ++E +
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713
Query: 430 IKEKFLF 410
IKE F
Sbjct: 714 IKENARF 720
>TAIR9_protein||AT4G18720.1 | Symbols: | transcription elongation
factor-related | chr4:10299945-10301228 FORWARD
Length = 267
Score = 112 bits (280), Expect = 5e-025
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 6/131 (4%)
Frame = -2
Query: 847 GQTGVKDEKAPAKAPPTNGAPKLTAMVKCNDPVRDKIRELLVDAMSKVHDESDDYD-RAR 671
G+ +D + A PT+ M K D RDK+RE+L +++KV E D + + R
Sbjct: 90 GREKSRDNREAAVKIPTH-----ATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTR 144
Query: 670 VVGCDPIRVAVAVESHMFEKLGRSTGAQKVKYRSIMFNLRDSNNPDLRRRVLTGEVSPEK 491
V CDP VAV+VE+ MFE LG G QK KYRSI+FN+ DSNNPDLRR+VL GE+S E+
Sbjct: 145 VTACDPWVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGER 204
Query: 490 LITLSGEEMAS 458
L+ + EEM S
Sbjct: 205 LVKMEKEEMGS 215
>TAIR9_protein||AT2G13640.1 | Symbols: | Golgi GDP mannose transporter (GONST1)
| chr2:5686136-5687290 REVERSE
Length = 385
Score = 73 bits (177), Expect = 5e-013
Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = -2
Query: 1237 ELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSL 1058
E+V+LFEAAKKAAD A GV S PEVSR +DAL L K IT ++ KL L
Sbjct: 263 EMVKLFEAAKKAADVANAKGVLSGKPEVSRCIDALSLLMKINITPKPKEPRRMMDKLEGL 322
Query: 1057 SKHPIDEIKTVATDLLDIWKKLVIEETSKSKKDANPAPVKVQKL 926
+KH +I VA+ LL +W++ + E+ + KK A K +KL
Sbjct: 323 TKHKDRKICHVASALLHLWRQRIREQ--ERKKSVTKASSKTRKL 364
>TAIR9_protein||AT5G27310.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: plasma membrane;
EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: TFIIS
N-terminal (InterPro:IPR017923), Transcription elongation factor,
TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G27780.1); Has 410 Blast hits to 363 proteins in 79 species:
Archae - 0; Bacteria - 42; Metazoa - 102; Fungi - 14; Plants - 69;
Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). |
chr5:9625449-9626561 FORWARD
Length = 371
Score = 65 bits (158), Expect = 8e-011
Identities = 39/89 (43%), Positives = 52/89 (58%)
Frame = -2
Query: 1237 ELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSL 1058
E+V+LFEAAKKAAD A GV S PE SR ++AL L K IT + KL L
Sbjct: 263 EMVKLFEAAKKAADVANAKGVLSGKPEASRCINALSLLMKINITPKPKEPRSMMDKLEGL 322
Query: 1057 SKHPIDEIKTVATDLLDIWKKLVIEETSK 971
+KH +I VA+ LL +W++ + E+ K
Sbjct: 323 TKHKDRKICHVASALLHLWRQRIREQERK 351
>TAIR9_protein||AT5G42325.1 | Symbols: | transcription elongation
factor-related | chr5:16924102-16924851 REVERSE
Length = 234
Score = 64 bits (155), Expect = 2e-010
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = -2
Query: 571 SIMFNLRDSNNPDLRRRVLTGEVSPEKLITLSGEEMASDKRKQETNQIKEKFLF 410
SI+FN+ DSNNPDLRR+VL GE+S E+L+ + +EM S+K ++E +IKE+ F
Sbjct: 162 SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQRIKERARF 215
>TAIR9_protein||AT2G27780.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS
InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription
elongation factor, TFIIS/CRSP70, N-terminal, sub-type
(InterPro:IPR003617); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G27310.1); Has 511 Blast hits to 423 proteins
in 85 species: Archae - 2; Bacteria - 45; Metazoa - 110; Fungi - 23;
Plants - 63; Viruses - 2; Other Eukaryotes - 266 (source: NCBI BLink).
| chr2:11845472-11846578 REVERSE
Length = 369
Score = 64 bits (153), Expect = 3e-010
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -2
Query: 1237 ELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSL 1058
E+V+LFEAAKKAAD A GV S E SR +DAL L K IT ++ KL L
Sbjct: 261 EMVKLFEAAKKAADVANAKGVLSGKAEASRCIDALSVLMKINITPKPKEPRRMMDKLEGL 320
Query: 1057 SKHPIDEIKTVATDLLDIWKKLVIEETSK 971
+KH I VA+ LL +W++ + E+ K
Sbjct: 321 TKHKDRMICHVASALLHLWRQRIREQERK 349
>TAIR9_protein||AT2G33090.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS
InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription
elongation factor, TFIIS/CRSP70, N-terminal, sub-type
(InterPro:IPR003617); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G33300.1); Has 40 Blast hits to 40 proteins in
10 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants -
36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr2:14035215-14035961 REVERSE
Length = 249
Score = 55 bits (131), Expect = 1e-007
Identities = 31/97 (31%), Positives = 54/97 (55%)
Frame = -2
Query: 1252 TTMESELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGK 1073
T +++ +ELFE AKK+AD A G+ +S E S +D L L +FPI+ + ++
Sbjct: 148 TKNDTDTLELFEIAKKSADFANAKGILASEVETSMCVDTLTLLLEFPISARDMETRKLMV 207
Query: 1072 KLRSLSKHPIDEIKTVATDLLDIWKKLVIEETSKSKK 962
+L L+KH +I A+ LL W++ + E+ + +
Sbjct: 208 RLEHLTKHKNRKICNSASKLLQCWRESIREQQLRESR 244
>TAIR9_protein||AT2G33300.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS
InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription
elongation factor, TFIIS/CRSP70, N-terminal, sub-type
(InterPro:IPR003617); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G33090.1); Has 44 Blast hits to 44 proteins in
10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
chr2:14113130-14113960 FORWARD
Length = 277
Score = 55 bits (130), Expect = 1e-007
Identities = 29/94 (30%), Positives = 53/94 (56%)
Frame = -2
Query: 1243 ESELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLR 1064
+ +L+ELFE AKK+AD A G+ +S E S +D L L +FPI+ + ++ +L
Sbjct: 179 DKDLLELFEIAKKSADFANAKGILASEVETSMCVDTLALLLEFPISARAMETRKLMVRLE 238
Query: 1063 SLSKHPIDEIKTVATDLLDIWKKLVIEETSKSKK 962
+L+KH +I + LL W++ + ++ + +
Sbjct: 239 NLTKHKNRKICNSVSKLLQCWRQSIRDQQLRESR 272
>TAIR9_protein||AT2G32820.1 | Symbols: | INVOLVED IN: transcription; LOCATED
IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal
(InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70,
N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G33090.1); Has 46 Blast hits
to 46 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:13926037-13926786 FORWARD
Length = 250
Score = 52 bits (123), Expect = 9e-007
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = -2
Query: 1237 ELVELFEAAKKAADAAAIDGVASSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSL 1058
E++ELFE AKK+AD A G ++ E S +D L L KF I + ++ +KL L
Sbjct: 162 EMLELFEMAKKSADVANAKGFLAAKEEASICVDILALLMKFSIISTAIETRRIMEKLERL 221
Query: 1057 SKHPIDEIKTVATDLLDIWKKLV 989
+KH +I A LL W++ +
Sbjct: 222 TKHKDRKICNAALALLHHWRQTI 244
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,940,565,389
Number of Sequences: 33410
Number of Extensions: 4940565389
Number of Successful Extensions: 184278111
Number of sequences better than 0.0: 0
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