Library    |     Search    |     Batch query    |     SNP    |     SSR  

SwissProt blast output of UN08843


BLASTX 7.6.2

Query= UN08843 /QuerySize=684
        (683 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bo...    179   1e-044
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Ho...    179   1e-044
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mu...    179   1e-044
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm...    178   5e-044
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm...    166   2e-040
sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm...    160   8e-039
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm...    136   2e-031
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Sa...    109   2e-023
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragme...     52   3e-006

>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus
        GN=SNRPD2 PE=3 SV=1

          Length = 118

 Score =  179 bits (454), Expect = 1e-044
 Identities = 87/112 (77%), Positives = 100/112 (89%), Gaps = 2/112 (1%)
 Frame = +3

Query: 108 NMSSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDR 281
           ++ ++P  E T +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDR
Sbjct:   2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDR 61

Query: 282 HCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           HCNMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct:  62 HCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens
        GN=SNRPD2 PE=1 SV=1

          Length = 118

 Score =  179 bits (454), Expect = 1e-044
 Identities = 87/112 (77%), Positives = 100/112 (89%), Gaps = 2/112 (1%)
 Frame = +3

Query: 108 NMSSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDR 281
           ++ ++P  E T +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDR
Sbjct:   2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDR 61

Query: 282 HCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           HCNMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct:  62 HCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus
        GN=Snrpd2 PE=2 SV=1

          Length = 118

 Score =  179 bits (454), Expect = 1e-044
 Identities = 87/112 (77%), Positives = 100/112 (89%), Gaps = 2/112 (1%)
 Frame = +3

Query: 108 NMSSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDR 281
           ++ ++P  E T +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDR
Sbjct:   2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDR 61

Query: 282 HCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           HCNMVLENV+EMWTEVPK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct:  62 HCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
        OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1

          Length = 119

 Score =  178 bits (449), Expect = 5e-044
 Identities = 86/108 (79%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
 Frame = +3

Query: 120 RPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 293
           +P  E T +   + EEEEFNTGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDRHCNM
Sbjct:   5 KPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 64

Query: 294 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           VLENV+EMWTE+P+TGKGKKK  PVN+DRFISKMFLRGDSVI+VLRNP
Sbjct:  65 VLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
        OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1

          Length = 118

 Score =  166 bits (418), Expect = 2e-040
 Identities = 81/109 (74%), Positives = 93/109 (85%), Gaps = 2/109 (1%)
 Frame = +3

Query: 117 SRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCN 290
           ++P  E T +     E+EEFN GPLS+L  SVKNN QVLINCRNN+KLLGRV+AFDRHCN
Sbjct:   5 AKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCN 64

Query: 291 MVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           MVLENV+EMWTEVPKTGKGKKKA  V +DRFISKMFLRGDSVI+V++NP
Sbjct:  65 MVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2
        OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1

          Length = 112

 Score =  160 bits (404), Expect = 8e-039
 Identities = 77/104 (74%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
 Frame = +3

Query: 126 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 305
           M ++T + K ++   + GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVLEN
Sbjct:   4 MNDETMEDKPDD---SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLEN 60

Query: 306 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           V+E+WTEVPKT KGKKKA P+N+DRFISKMFLRGDSVI+VL+NP
Sbjct:  61 VKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104

>sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
        OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1

          Length = 115

 Score =  136 bits (341), Expect = 2e-031
 Identities = 68/113 (60%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
 Frame = +3

Query: 105 ANMSSRPMEE--DTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFD 278
           A++  +P  E  +    + EE EF+ GPLSVL  +VKN+ QVLINCRNN+KLL RV+AFD
Sbjct:   2 ADLVDKPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFD 61

Query: 279 RHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
           RH NMVLENV+EMWTE  +T  G KK   +N+DRFISKMFLRGD V++V+R P
Sbjct:  62 RHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113

>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces
        cerevisiae GN=SMD2 PE=1 SV=2

          Length = 110

 Score =  109 bits (271), Expect = 2e-023
 Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 7/94 (7%)
 Frame = +3

Query: 156 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 335
           EE EF  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE   
Sbjct:  22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78

Query: 336 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 437
               KK    +NR+RFISK+FLRGDSVI+VL+ P
Sbjct:  79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108

>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus
        scrofa GN=SNRPD2 PE=3 SV=1

          Length = 50

 Score =  52 bits (123), Expect = 3e-006
 Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 NMSSRPMEEDTNQ--GKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNR 248
           ++ ++P  E T +   K EEEEFNTGPLSV   S K  TQVLINCRN +
Sbjct:   2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,801,685,782
Number of Sequences: 518415
Number of Extensions: 36801685782
Number of Successful Extensions: 258262551
Number of sequences better than 0.0: 0