BLASTX 7.6.2
Query= UN09004 /QuerySize=578
(577 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|2833375|sp|Q39290.1|RPAB5_BRANA RecName: Full=DNA-directed RN... 151 5e-035
gi|30682258|ref|NP_849640.1| DNA-directed RNA Polymerase II subu... 147 1e-033
gi|224069248|ref|XP_002326311.1| predicted protein [Populus tric... 142 4e-032
gi|225425585|ref|XP_002263065.1| PREDICTED: hypothetical protein... 142 4e-032
gi|326497947|dbj|BAJ94836.1| predicted protein [Hordeum vulgare ... 140 2e-031
gi|102139964|gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 k... 139 2e-031
gi|116778557|gb|ABK20909.1| unknown [Picea sitchensis] 139 2e-031
gi|255631340|gb|ACU16037.1| unknown [Glycine max] 139 2e-031
gi|115484555|ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japo... 139 3e-031
gi|115487650|ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japo... 139 3e-031
gi|226528766|ref|NP_001148175.1| DNA-directed RNA polymerase II ... 139 3e-031
gi|168033365|ref|XP_001769186.1| predicted protein [Physcomitrel... 138 4e-031
gi|15220572|ref|NP_176363.1| DNA-directed RNA polymerases II sub... 137 1e-030
gi|226506188|ref|NP_001152395.1| LOC100286035 [Zea mays] 137 1e-030
gi|226510500|ref|NP_001149707.1| DNA-directed RNA polymerase II ... 137 1e-030
gi|222615665|gb|EEE51797.1| hypothetical protein OsJ_33258 [Oryz... 134 8e-030
gi|255086357|ref|XP_002509145.1| predicted protein [Micromonas s... 131 5e-029
gi|255583986|ref|XP_002532739.1| DNA-directed RNA polymerase II,... 131 7e-029
gi|303284635|ref|XP_003061608.1| predicted protein [Micromonas p... 129 3e-028
gi|324574988|gb|ADY49928.1| DNA-directed RNA polymerases I, II, ... 127 1e-027
>gi|2833375|sp|Q39290.1|RPAB5_BRANA RecName: Full=DNA-directed RNA polymerases
I, II, and III subunit RPABC5; Short=RNA polymerases I, II, and III
subunit ABC5; AltName: Full=ABC10; AltName: Full=DNA-directed RNA
polymerase III subunit L; AltName: Full=RPB10 homolog
Length = 71
Score = 151 bits (381), Expect = 5e-035
Identities = 71/71 (100%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEKSDNS
Sbjct: 61 NYNTLEKSDNS 71
>gi|30682258|ref|NP_849640.1| DNA-directed RNA Polymerase II subunit L
[Arabidopsis thaliana]
Length = 71
Score = 147 bits (370), Expect = 1e-033
Identities = 69/71 (97%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQLDYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEKSDNS
Sbjct: 61 NYNTLEKSDNS 71
>gi|224069248|ref|XP_002326311.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 142 bits (356), Expect = 4e-032
Identities = 66/71 (92%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEKS+ S
Sbjct: 61 NYNTLEKSEGS 71
>gi|225425585|ref|XP_002263065.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 71
Score = 142 bits (356), Expect = 4e-032
Identities = 66/71 (92%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEKS+ S
Sbjct: 61 NYNTLEKSETS 71
>gi|326497947|dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 71
Score = 140 bits (351), Expect = 2e-031
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ S
Sbjct: 61 NYNTLEKTETS 71
>gi|102139964|gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide,
putative [Musa balbisiana]
Length = 70
Score = 139 bits (350), Expect = 2e-031
Identities = 64/70 (91%), Positives = 67/70 (95%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDN 329
NYNTLEK+++
Sbjct: 61 NYNTLEKTES 70
>gi|116778557|gb|ABK20909.1| unknown [Picea sitchensis]
Length = 71
Score = 139 bits (350), Expect = 2e-031
Identities = 64/71 (90%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLE+S+ +
Sbjct: 61 NYNTLERSETN 71
>gi|255631340|gb|ACU16037.1| unknown [Glycine max]
Length = 71
Score = 139 bits (350), Expect = 2e-031
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTL+KSD S
Sbjct: 61 NYNTLDKSDPS 71
>gi|115484555|ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
Length = 74
Score = 139 bits (349), Expect = 3e-031
Identities = 64/71 (90%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ +
Sbjct: 61 NYNTLEKTETT 71
>gi|115487650|ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
Length = 72
Score = 139 bits (349), Expect = 3e-031
Identities = 64/71 (90%), Positives = 67/71 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ +
Sbjct: 61 NYNTLEKTETA 71
>gi|226528766|ref|NP_001148175.1| DNA-directed RNA polymerase II 8.2 kDa
polypeptide [Zea mays]
Length = 242
Score = 139 bits (348), Expect = 3e-031
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = +3
Query: 117 KMIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKL 296
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 171 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 230
Query: 297 LNYNTLEKSDNS 332
LNYNTLEK++ S
Sbjct: 231 LNYNTLEKTETS 242
>gi|168033365|ref|XP_001769186.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 73
Score = 138 bits (347), Expect = 4e-031
Identities = 63/71 (88%), Positives = 68/71 (95%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALALVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLE+++N+
Sbjct: 61 NYNTLERNENT 71
>gi|15220572|ref|NP_176363.1| DNA-directed RNA polymerases II subunit L
[Arabidopsis thaliana]
Length = 71
Score = 137 bits (344), Expect = 1e-030
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MI+PVRCFTCGKVIGNKWD YL+LLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSD 326
NYNT+EKSD
Sbjct: 61 NYNTMEKSD 69
>gi|226506188|ref|NP_001152395.1| LOC100286035 [Zea mays]
Length = 71
Score = 137 bits (344), Expect = 1e-030
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDVYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ S
Sbjct: 61 NYNTLEKTETS 71
>gi|226510500|ref|NP_001149707.1| DNA-directed RNA polymerase II 8.2 kDa
polypeptide [Zea mays]
Length = 71
Score = 137 bits (343), Expect = 1e-030
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ S
Sbjct: 61 NYNTLEKTETS 71
>gi|222615665|gb|EEE51797.1| hypothetical protein OsJ_33258 [Oryza sativa
Japonica Group]
Length = 74
Score = 134 bits (336), Expect = 8e-030
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNK D YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKGDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEK++ +
Sbjct: 61 NYNTLEKTETT 71
>gi|255086357|ref|XP_002509145.1| predicted protein [Micromonas sp. RCC299]
Length = 69
Score = 131 bits (329), Expect = 5e-029
Identities = 61/69 (88%), Positives = 63/69 (91%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTE DALDAL+L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTERDALDALDLHRYCCRRMLMCHVDLIEKLL 60
Query: 300 NYNTLEKSD 326
NYNTLE+ D
Sbjct: 61 NYNTLERQD 69
>gi|255583986|ref|XP_002532739.1| DNA-directed RNA polymerase II, subunit n,
putative [Ricinus communis]
Length = 76
Score = 131 bits (328), Expect = 7e-029
Identities = 63/76 (82%), Positives = 66/76 (86%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYN-----TLEKSDNS 332
NYN LE+S+ S
Sbjct: 61 NYNKYPFAALERSEGS 76
>gi|303284635|ref|XP_003061608.1| predicted protein [Micromonas pusilla
CCMP1545]
Length = 74
Score = 129 bits (323), Expect = 3e-028
Identities = 60/69 (86%), Positives = 63/69 (91%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+E DALDAL+L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSERDALDALDLNRYCCRRMLMCHVDLIEKLL 60
Query: 300 NYNTLEKSD 326
NYNTLE+ D
Sbjct: 61 NYNTLERVD 69
>gi|324574988|gb|ADY49928.1| DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Ascaris suum]
Length = 67
Score = 127 bits (318), Expect = 1e-027
Identities = 58/67 (86%), Positives = 63/67 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCGKVIGNKWDAYL LLQ +YTEGDALDALNL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDAYLGLLQSEYTEGDALDALNLRRYCCRRMLLSHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY+ LEK
Sbjct: 61 NYHPLEK 67
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,053,028,657,214
Number of Sequences: 15229318
Number of Extensions: 1053028657214
Number of Successful Extensions: 300909508
Number of sequences better than 0.0: 0
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