BLASTX 7.6.2
Query= UN09004 /QuerySize=578
(577 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39290|RPAB5_BRANA DNA-directed RNA polymerases I, II, and II... 151 3e-036
sp|Q9SYA6|RPAB5_ARATH DNA-directed RNA polymerases I, II, and II... 137 5e-032
sp|Q55AB6|RPAB5_DICDI DNA-directed RNA polymerases I, II, and II... 125 2e-028
sp|Q32P78|RPAB5_BOVIN DNA-directed RNA polymerases I, II, and II... 122 2e-027
sp|Q6QN04|RPAB5_CHILA DNA-directed RNA polymerases I, II, and II... 122 2e-027
sp|P62875|RPAB5_HUMAN DNA-directed RNA polymerases I, II, and II... 122 2e-027
sp|P62876|RPAB5_MOUSE DNA-directed RNA polymerases I, II, and II... 122 2e-027
sp|Q9VC49|RPAB5_DROME DNA-directed RNA polymerases I, II, and II... 121 5e-027
sp|A8Y1E9|RPAB5_CAEBR DNA-directed RNA polymerases I, II, and II... 116 1e-025
sp|Q9GR61|RPAB5_CAEEL DNA-directed RNA polymerases I, II, and II... 116 1e-025
sp|O13877|RPAB5_SCHPO DNA-directed RNA polymerases I, II, and II... 114 6e-025
sp|Q8SRS6|RPAB5_ENCCU DNA-directed RNA polymerases I, II, and II... 84 4e-016
sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Me... 79 1e-014
sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N OS=Su... 79 2e-014
sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
sp|C3N058|RPON_SULIA DNA-directed RNA polymerase subunit N OS=Su... 75 3e-013
sp|C4KJ97|RPON_SULIK DNA-directed RNA polymerase subunit N OS=Su... 75 3e-013
sp|C3MJQ1|RPON_SULIL DNA-directed RNA polymerase subunit N OS=Su... 75 3e-013
sp|C3MZ09|RPON_SULIM DNA-directed RNA polymerase subunit N OS=Su... 75 3e-013
sp|C3NMP6|RPON_SULIN DNA-directed RNA polymerase subunit N OS=Su... 75 3e-013
>sp|Q39290|RPAB5_BRANA DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Brassica napus PE=3 SV=1
Length = 71
Score = 151 bits (381), Expect = 3e-036
Identities = 71/71 (100%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSDNS 332
NYNTLEKSDNS
Sbjct: 61 NYNTLEKSDNS 71
>sp|Q9SYA6|RPAB5_ARATH DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1
Length = 71
Score = 137 bits (344), Expect = 5e-032
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MI+PVRCFTCGKVIGNKWD YL+LLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 300 NYNTLEKSD 326
NYNT+EKSD
Sbjct: 61 NYNTMEKSD 69
>sp|Q55AB6|RPAB5_DICDI DNA-directed RNA polymerases I, II, and III subunit
rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1
Length = 70
Score = 125 bits (313), Expect = 2e-028
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGKVIGNKWDAYL LLQ+DYTEGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 300 NYNTL 314
NY L
Sbjct: 61 NYTPL 65
>sp|Q32P78|RPAB5_BOVIN DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1
Length = 67
Score = 122 bits (305), Expect = 2e-027
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|Q6QN04|RPAB5_CHILA DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1
Length = 67
Score = 122 bits (305), Expect = 2e-027
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|P62875|RPAB5_HUMAN DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1
Length = 67
Score = 122 bits (305), Expect = 2e-027
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|P62876|RPAB5_MOUSE DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1
Length = 67
Score = 122 bits (305), Expect = 2e-027
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|Q9VC49|RPAB5_DROME DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1
Length = 67
Score = 121 bits (301), Expect = 5e-027
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCGKVIGNKW++YL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|A8Y1E9|RPAB5_CAEBR DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Caenorhabditis briggsae GN=rpb-10 PE=3 SV=1
Length = 67
Score = 116 bits (290), Expect = 1e-025
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCGKVIG+KW+ YL LQ +Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY+ LEK
Sbjct: 61 NYHPLEK 67
>sp|Q9GR61|RPAB5_CAEEL DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Caenorhabditis elegans GN=rpb-10 PE=2 SV=1
Length = 67
Score = 116 bits (290), Expect = 1e-025
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCGKVIG+KW+ YL LQ +Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 300 NYNTLEK 320
NY+ LEK
Sbjct: 61 NYHPLEK 67
>sp|O13877|RPAB5_SCHPO DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2
Length = 71
Score = 114 bits (283), Expect = 6e-025
Identities = 52/70 (74%), Positives = 58/70 (82%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCF+CGKVIG+KWD YL LLQ D TEG+ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 300 NYNTLEKSDN 329
YN L K N
Sbjct: 61 CYNPLSKQKN 70
>sp|Q8SRS6|RPAB5_ENCCU DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1
Length = 72
Score = 84 bits (207), Expect = 4e-016
Identities = 34/66 (51%), Positives = 51/66 (77%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCGK I +KW+ Y +LL++D + +ALD L + R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 300 NYNTLE 317
++ ++
Sbjct: 61 KFDIVK 66
>sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1
Length = 66
Score = 79 bits (194), Expect = 1e-014
Identities = 34/62 (54%), Positives = 45/62 (72%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIPVRCFTCG +I +KWDA+ ++ G LD LN+ R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVV 60
Query: 300 NY 305
NY
Sbjct: 61 NY 62
>sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N OS=Sulfolobus
tokodaii GN=rpoN PE=3 SV=1
Length = 66
Score = 79 bits (192), Expect = 2e-014
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
MIIP+RCFTCG +IG+KW+ ++ + G LD L + RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N OS=Sulfolobus
solfataricus GN=rpoN PE=1 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/62 (46%), Positives = 45/62 (72%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW +++ + G LD L + RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|C3N058|RPON_SULIA DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.16.27) GN=rpoN PE=3 SV=1
Length = 66
Score = 75 bits (182), Expect = 3e-013
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|C4KJ97|RPON_SULIK DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1
Length = 66
Score = 75 bits (182), Expect = 3e-013
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|C3MJQ1|RPON_SULIL DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 75 bits (182), Expect = 3e-013
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|C3MZ09|RPON_SULIM DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 75 bits (182), Expect = 3e-013
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
>sp|C3NMP6|RPON_SULIN DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1
Length = 66
Score = 75 bits (182), Expect = 3e-013
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 120 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 299
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 300 NY 305
+Y
Sbjct: 61 HY 62
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,801,685,782
Number of Sequences: 518415
Number of Extensions: 36801685782
Number of Successful Extensions: 258262551
Number of sequences better than 0.0: 0
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