Library    |     Search    |     Batch query    |     SNP    |     SSR  

TAIR blast output of UN09104


BLASTX 7.6.2

Query= UN09104 /QuerySize=619
        (618 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT2G03870.2 | Symbols:  | small nuclear ribonucle...    184   4e-047
TAIR9_protein||AT2G03870.1 | Symbols:  | small nuclear ribonucle...    184   4e-047
TAIR9_protein||AT2G23930.1 | Symbols: SNRNP-G | SNRNP-G (PROBABL...     54   7e-008
TAIR9_protein||AT2G23930.2 | Symbols: SNRNP-G | SNRNP-G (PROBABL...     47   6e-006

>TAIR9_protein||AT2G03870.2 | Symbols:  | small nuclear ribonucleoprotein,
        putative / snRNP, putative / Sm protein, putative |
        chr2:1180306-1181256 FORWARD

          Length = 100

 Score =  184 bits (466), Expect = 4e-047
 Identities = 94/100 (94%)
 Frame = +3

Query: 117 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGAVESVRDHDDPLKT 296
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD AVE VRDHDDPLKT
Sbjct:   1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 297 TDQTRPLGLIVCRGTAVMLVSPTDGTEEIANPFVQPEAV* 416
           TDQTR LGLIVCRGTAVMLVSPTDGTEEIANPFV  EAV*
Sbjct:  61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAEAV* 100

>TAIR9_protein||AT2G03870.1 | Symbols:  | small nuclear ribonucleoprotein,
        putative / snRNP, putative / Sm protein, putative |
        chr2:1180306-1181256 FORWARD

          Length = 100

 Score =  184 bits (466), Expect = 4e-047
 Identities = 94/100 (94%)
 Frame = +3

Query: 117 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGAVESVRDHDDPLKT 296
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD AVE VRDHDDPLKT
Sbjct:   1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 297 TDQTRPLGLIVCRGTAVMLVSPTDGTEEIANPFVQPEAV* 416
           TDQTR LGLIVCRGTAVMLVSPTDGTEEIANPFV  EAV*
Sbjct:  61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAEAV* 100

>TAIR9_protein||AT2G23930.1 | Symbols: SNRNP-G | SNRNP-G (PROBABLE SMALL NUCLEAR
        RIBONUCLEOPROTEIN G) | chr2:10182353-10183026 FORWARD

          Length = 81

 Score =  54 bits (128), Expect = 7e-008
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +3

Query: 144 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGAVE 263
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE
Sbjct:   9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48

>TAIR9_protein||AT2G23930.2 | Symbols: SNRNP-G | SNRNP-G (PROBABLE SMALL NUCLEAR
        RIBONUCLEOPROTEIN G) | chr2:10182496-10183026 FORWARD

          Length = 68

 Score =  47 bits (111), Expect = 6e-006
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +3

Query: 159 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGAVE 263
           +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE
Sbjct:   1 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 35

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,146,786,476
Number of Sequences: 33410
Number of Extensions: 5146786476
Number of Successful Extensions: 194998838
Number of sequences better than 0.0: 0