BLASTX 7.6.2
Query= UN09463 /QuerySize=848
(847 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G62440.1 | Symbols: | Encodes a protein DOMIN... 330 6e-091
>TAIR9_protein||AT5G62440.1 | Symbols: | Encodes a protein DOMINO1 that belongs
to a plant-specific gene family sharing a common motif present in the
tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is
located in the nucleus. Arabidopsis embryos carrying the domino1
mutation grow slowly in comparison with wild type embryos and reach
only the globular stage at desiccation. The primary defect of the
mutation at the cellular level is the large size of the nucleolus that
can be observed soon after fertilization in the nuclei of both the
embryo and the endosperm. DOMINO1 might have a role in ribosome
biogenesis and in determining the rate of cell division. |
chr5:25072620-25073917 REVERSE
Length = 203
Score = 330 bits (846), Expect = 6e-091
Identities = 168/209 (80%), Positives = 177/209 (84%), Gaps = 16/209 (7%)
Frame = -1
Query: 766 MAEQQEILDSVSAAEVKPDPITDTEVEEAA-------EKRGREETTEETEDGGGESKKQK 608
MAE+QEI+DS+S AEV PD D EVE A EKR REET E E+ GGESKKQK
Sbjct: 1 MAEEQEIVDSLS-AEVNPDQKVDMEVETATPKAETGDEKREREET--EEEENGGESKKQK 57
Query: 607 VGEEEKPNGSDPVKLGPKEFVTSVAMFDYFTKFMHFWPTDLDVNKYEHMVLLDLIKKGHT 428
VGEEEK S PVKLGPKEFVTSVAMFDYF KF+HFWPTDLDVNKYEHMVLLDLIKKGH+
Sbjct: 58 VGEEEK---SGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHS 114
Query: 427 EPDNKIGGGIKAFQVRTHPMWKSRCFFLVREDDTADDFSYRKCVDHILPLPENMKTPGSN 248
EP+ KIGGGIK FQVRTHPMWKSRCFFLVREDDTADDFS+RKCVD ILPLPENMKTPG+N
Sbjct: 115 EPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMKTPGAN 174
Query: 247 GNGHG---GGGGGRRGGRGGGRGGRFRR* 170
GNGHG GGGGGRRGGRGGGRGGRFRR*
Sbjct: 175 GNGHGGGRGGGGGRRGGRGGGRGGRFRR* 203
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,257,720,425
Number of Sequences: 33410
Number of Extensions: 5257720425
Number of Successful Extensions: 195094093
Number of sequences better than 0.0: 0
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