BLASTX 7.6.2
Query= UN09884 /QuerySize=618
(617 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bo... 179 2e-044
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Ho... 179 2e-044
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mu... 179 2e-044
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm... 177 5e-044
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm... 166 9e-041
sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm... 158 3e-038
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm... 134 4e-031
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Sa... 109 2e-023
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragme... 51 4e-006
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protei... 50 1e-005
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus
GN=SNRPD2 PE=3 SV=1
Length = 118
Score = 179 bits (452), Expect = 2e-044
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 313
K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 312 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
PK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens
GN=SNRPD2 PE=1 SV=1
Length = 118
Score = 179 bits (452), Expect = 2e-044
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 313
K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 312 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
PK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus
GN=Snrpd2 PE=2 SV=1
Length = 118
Score = 179 bits (452), Expect = 2e-044
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 313
K EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 312 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
PK+GKGKKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1
Length = 119
Score = 177 bits (448), Expect = 5e-044
Identities = 83/96 (86%), Positives = 91/96 (94%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 313
+ EEEEFNTGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 17 RQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEL 76
Query: 312 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
P+TGKGKKK PVN+DRFISKMFLRGDSVI+VLRNP
Sbjct: 77 PRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 166 bits (420), Expect = 9e-041
Identities = 81/110 (73%), Positives = 91/110 (82%)
Frame = -3
Query: 534 QANMSRPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC 355
QA M + E+EEFN GPLS+L SVKNN QVLINCRNN+KLLGRV+AFDRHC
Sbjct: 4 QAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHC 63
Query: 354 NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
NMVLENV+EMWTEVPKTGKGKKKA V +DRFISKMFLRGDSVI+V++NP
Sbjct: 64 NMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2
OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 158 bits (399), Expect = 3e-038
Identities = 77/100 (77%), Positives = 89/100 (89%), Gaps = 2/100 (2%)
Frame = -3
Query: 498 NGKTEEE--EFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREM 325
N +T E+ + + GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVLENV+E+
Sbjct: 5 NDETMEDKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEI 64
Query: 324 WTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
WTEVPKT KGKKKA P+N+DRFISKMFLRGDSVI+VL+NP
Sbjct: 65 WTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1
Length = 115
Score = 134 bits (337), Expect = 4e-031
Identities = 65/96 (67%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 313
+ EE EF+ GPLSVL +VKN+ QVLINCRNN+KLL RV+AFDRH NMVLENV+EMWTE
Sbjct: 19 RLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEK 78
Query: 312 PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
+T G KK +N+DRFISKMFLRGD V++V+R P
Sbjct: 79 KRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces
cerevisiae GN=SMD2 PE=1 SV=2
Length = 110
Score = 109 bits (271), Expect = 2e-023
Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 7/94 (7%)
Frame = -3
Query: 486 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 307
EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 306 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 205
KK +NR+RFISK+FLRGDSVI+VL+ P
Sbjct: 79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus
scrofa GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 51 bits (121), Expect = 4e-006
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -3
Query: 492 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNR 394
K EEEEFNTGPLSV S K TQVLINCRN +
Sbjct: 18 KREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2
Length = 93
Score = 50 bits (118), Expect = 1e-005
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = -3
Query: 462 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 283
PL ++ +S+ + V + R +R+L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 282 LPVNRDRFISKMFLRGDSVIIV 217
L R + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,366,676,449
Number of Sequences: 518415
Number of Extensions: 41366676449
Number of Successful Extensions: 294470065
Number of sequences better than 0.0: 0
|
