BLASTX 7.6.2
Query= UN09924 /QuerySize=1055
(1054 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (... 389 1e-108
TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (... 389 1e-108
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 146 4e-035
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 138 1e-032
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 84 1e-016
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 75 8e-014
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 74 1e-013
TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding /... 74 1e-013
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 65 6e-011
TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-bindin... 64 1e-010
TAIR9_protein||AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP... 60 3e-009
TAIR9_protein||AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD,... 60 3e-009
>TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 389 bits (999), Expect = 1e-108
Identities = 208/261 (79%), Positives = 230/261 (88%), Gaps = 11/261 (4%)
Frame = +2
Query: 77 FLTAVVSIKPTLFSFHSESSPSLQSQTNAFALKAKAFPSVPTAISLPRTSRMRLIPRATL 256
FLT VVSIKPT+FSF SES L ++ N F+ +K FPS+ S R+SR R IP A
Sbjct: 4 FLTNVVSIKPTIFSFQSESFTPLHTRVNVFS--SKPFPSLAGTFS--RSSRTRFIPYAVT 59
Query: 257 ETEEKP-ALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRF 433
ETEEKP ALDP++E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRF
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 434 GFATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSEDSAFV 613
GFATMKSVEDANAV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSEDSAFV
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI------ASSPDLSVLQSEDSAFV 173
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
DSPYKVYVGNLAK+VTKEMLENLFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEA
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 794 AILALNNSLLEGQKIRVNKA* 856
AI+ALNNSLLEGQKIRVNKA*
Sbjct: 234 AIVALNNSLLEGQKIRVNKA* 254
>TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 389 bits (999), Expect = 1e-108
Identities = 208/261 (79%), Positives = 230/261 (88%), Gaps = 11/261 (4%)
Frame = +2
Query: 77 FLTAVVSIKPTLFSFHSESSPSLQSQTNAFALKAKAFPSVPTAISLPRTSRMRLIPRATL 256
FLT VVSIKPT+FSF SES L ++ N F+ +K FPS+ S R+SR R IP A
Sbjct: 4 FLTNVVSIKPTIFSFQSESFTPLHTRVNVFS--SKPFPSLAGTFS--RSSRTRFIPYAVT 59
Query: 257 ETEEKP-ALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRF 433
ETEEKP ALDP++E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRF
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 434 GFATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSEDSAFV 613
GFATMKSVEDANAV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSEDSAFV
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI------ASSPDLSVLQSEDSAFV 173
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
DSPYKVYVGNLAK+VTKEMLENLFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEA
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 794 AILALNNSLLEGQKIRVNKA* 856
AI+ALNNSLLEGQKIRVNKA*
Sbjct: 234 AIVALNNSLLEGQKIRVNKA* 254
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 146 bits (366), Expect = 4e-035
Identities = 75/199 (37%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Frame = +2
Query: 257 ETEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFG 436
E EE+ + R+Y+GN+P T+T+ +L+++ E G V VQ++YDK + RSR FG
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 437 FATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSEDSAFVD 616
F TM S+E+A ++ N + I GR VKVN E P + + ++ + ++VD
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP----RGGENEVMRTKIRDNNRSYVD 216
Query: 617 SPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAA 796
SP+KVY GNL ++T + L++ F ++ VL AKV T +S GFGF++F S E+V++A
Sbjct: 217 SPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSA 276
Query: 797 ILALNNSLLEGQKIRVNKA 853
+ +N +EG+ +R+N A
Sbjct: 277 LATMNGVEVEGRALRLNLA 295
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 138 bits (345), Expect = 1e-032
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Frame = +2
Query: 272 PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMK 451
P + + + ++++GN+P V + QL +L E G VE V+V+YDK +GRSR FGF TM
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140
Query: 452 SVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSED------SAFV 613
SV + A ++ NG ++GR ++VN P + S P S S +
Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGA 200
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
S +VYVGNL+ V LE+LFSE+GKV+ A+V + +S GFGFVT+ S ++V+
Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260
Query: 794 AILALNNSLLEGQKIRVNKA 853
AI +L+ + L+G++IRV++A
Sbjct: 261 AIKSLDGADLDGRQIRVSEA 280
Score = 66 bits (160), Expect = 3e-011
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +2
Query: 290 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDAN 469
A S RVY+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T S ++
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 470 AVIEKLNGTTIEGREVKVNITE 535
I+ L+G ++GR+++V+ E
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAE 281
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 84 bits (207), Expect = 1e-016
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +2
Query: 293 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 472
E + RVY+GN+P V N +L +L EHG V + +V+YD+ +GRSR FGF TM V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 473 VIEKLNGTTIEGREVKVNITEK 538
I L+G +EGR ++VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
Score = 70 bits (170), Expect = 2e-012
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +2
Query: 623 YKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIL 802
++VYVGNL V LE LFSE GKV+ A+V T +S GFGFVT S +++ AI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 803 ALNNSLLEGQKIRVNKA 853
AL+ LEG+ IRVN A
Sbjct: 304 ALDGQNLEGRAIRVNVA 320
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 75 bits (182), Expect = 8e-014
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +2
Query: 269 KPALDPNA-ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFAT 445
+P P +++ R+Y+GN+P V + +L +L EHG V +V+ D+ +GRSR FGF
Sbjct: 195 RPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Query: 446 MKSVEDANAVIEKLNGTTIEGREVKVNITEK 538
M + + N I L+G +EGR +KVN+ E+
Sbjct: 255 MSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Score = 72 bits (176), Expect = 4e-013
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = +2
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
D+ +++YVGNL V LE LFSE GKV+ A+V T +S GFGFV S++ +V
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 794 AILALNNSLLEGQKIRVNKA 853
AI AL+ LEG+ I+VN A
Sbjct: 264 AIAALDGQNLEGRAIKVNVA 283
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 74 bits (181), Expect = 1e-013
Identities = 36/90 (40%), Positives = 53/90 (58%)
Frame = +2
Query: 305 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 484
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 485 LNGTTIEGREVKVNITEKPLELSSSSSSSP 574
NG EGR ++VN P + S S P
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGP 189
Score = 73 bits (177), Expect = 3e-013
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +2
Query: 626 KVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAILA 805
++YVGNL+ V LENLF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 806 LNNSLLEGQKIRVNKA 853
LN + L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 68 bits (164), Expect = 1e-011
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2
Query: 296 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAV 475
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S ++
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 476 IEKLNGTTIEGREVKVNITE 535
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 74 bits (181), Expect = 1e-013
Identities = 36/90 (40%), Positives = 53/90 (58%)
Frame = +2
Query: 305 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 484
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 485 LNGTTIEGREVKVNITEKPLELSSSSSSSP 574
NG EGR ++VN P + S S P
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGP 189
Score = 73 bits (177), Expect = 3e-013
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +2
Query: 626 KVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAILA 805
++YVGNL+ V LENLF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 806 LNNSLLEGQKIRVNKA 853
LN + L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 68 bits (164), Expect = 1e-011
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2
Query: 296 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAV 475
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S ++
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 476 IEKLNGTTIEGREVKVNITE 535
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 65 bits (157), Expect = 6e-011
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 593 SEDSAFVDSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFS 772
+++ + ++ +K++VGNL+ +VT E L F E G V+ A+V T +S G+GFV +S
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYS 226
Query: 773 SDEDVEAAILALNNSLLEGQKIRVNKA 853
S ++E A+ +L+ LEG+ IRVN A
Sbjct: 227 SKAEMETALESLDGFELEGRAIRVNLA 253
Score = 62 bits (148), Expect = 7e-010
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 269 KPALDP-NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFAT 445
KP +P E+ ++++GN+ TVT+E L E G V +V++D +GRSR +GF
Sbjct: 165 KPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVC 224
Query: 446 MKSVEDANAVIEKLNGTTIEGREVKVNITE 535
S + +E L+G +EGR ++VN+ +
Sbjct: 225 YSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022601-8023162 FORWARD
Length = 88
Score = 64 bits (154), Expect = 1e-010
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +2
Query: 626 KVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAILA 805
+VYVGNL+ + T +ML FS G V+ A V R T +S GFGFVT+SS + EAA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 806 LNNSLLEGQKIRV 844
++ L G+++ V
Sbjct: 64 MDGKELNGRRVSV 76
>TAIR9_protein||AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA
binding / single-stranded DNA binding | chr2:9265477-9266316 REVERSE
Length = 177
Score = 60 bits (143), Expect = 3e-009
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +2
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
D Y+ +VG LA + LE F++ G V+ +K+ T +S GFGFVTF ++ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 794 AILALNNSLLEGQKIRVNKA 853
AI +N L+G+ I VN+A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>TAIR9_protein||AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN
RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr2:9265477-9266316 REVERSE
Length = 160
Score = 60 bits (143), Expect = 3e-009
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +2
Query: 614 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 793
D Y+ +VG LA + LE F++ G V+ +K+ T +S GFGFVTF ++ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 794 AILALNNSLLEGQKIRVNKA 853
AI +N L+G+ I VN+A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,526,529,529
Number of Sequences: 33410
Number of Extensions: 5526529529
Number of Successful Extensions: 205441165
Number of sequences better than 0.0: 0
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