BLASTX 7.6.2
Query= UN09980 /QuerySize=961
(960 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT... 447 2e-123
gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Ar... 445 7e-123
gi|224141741|ref|XP_002324223.1| predicted protein [Populus tric... 380 2e-103
gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein... 374 2e-101
gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vini... 373 2e-101
gi|224089018|ref|XP_002308603.1| predicted protein [Populus tric... 372 4e-101
gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP... 356 4e-096
gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, ke... 345 9e-093
gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza... 312 9e-083
gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japo... 308 1e-081
gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryz... 308 1e-081
gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT... 306 4e-081
gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 ... 302 5e-080
gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Z... 301 1e-079
gi|226504202|ref|NP_001146469.1| hypothetical protein LOC1002800... 296 5e-078
gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrel... 253 3e-065
gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryz... 183 4e-044
gi|224031563|gb|ACN34857.1| unknown [Zea mays] 169 5e-040
gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis ... 156 6e-036
gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT... 154 2e-035
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002
[Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 447 bits (1148), Expect = 2e-123
Identities = 219/235 (93%), Positives = 226/235 (96%), Gaps = 4/235 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
MEIDREDGR PNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPK GT+KNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
CFEVIWKPK+GQIGK EKEYEMI+K+TIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI
Sbjct: 61 CFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDAGIPMKHLAVAICCCLAD+GY+VLDPNKLEEKKMTAFAYLVFPNTTLSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLADNGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQTQ 196
E EGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ+Q
Sbjct: 181 EGSSVAEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQSQ 235
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis
thaliana]
Length = 239
Score = 445 bits (1143), Expect = 7e-123
Identities = 218/234 (93%), Positives = 225/234 (96%), Gaps = 4/234 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
MEIDREDGR PNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPK GT+KNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
CFEVIWKPKSGQIGK EKEYEMILK+TIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI
Sbjct: 61 CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDAGIPMKHLAVAICCCLA++GY+VLDPNKLEEKKMTAFAYLVFPNTTLSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQT 199
E EGEPVEHGIITS+THGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ+
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQS 234
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 380 bits (975), Expect = 2e-103
Identities = 179/232 (77%), Positives = 207/232 (89%), Gaps = 4/232 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
ME DR+DGR P+QLRPL+C+RN+LHR HGSASWSQGDTKVLAAVYGPK GT+KNENPEKA
Sbjct: 1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
C EVIWKPK+GQIGK EKE+EMILK+T+QSIC+LT+NPNTTTS+I+QVV+DDG+LL CAI
Sbjct: 61 CIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDAGIPMKHLAVAICCCLA+ GYV+LDP KLEE+KM F YLVFPN+ +SVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVSVLP 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 205
E VEGEP+EHGIITSVTHGVMSV++Y C+E GRAA+ LS F R++ Q
Sbjct: 181 EGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAASTKLSDFLRRSLQ 232
>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 245
Score = 374 bits (958), Expect = 2e-101
Identities = 176/233 (75%), Positives = 207/233 (88%), Gaps = 4/233 (1%)
Frame = -1
Query: 891 AMEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEK 712
+MEI R+DGR NQLRPLACSRNIL+R HGSASWSQGDTKVLAAVYGPK GT+KNENPEK
Sbjct: 2 SMEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK 61
Query: 711 ACFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCA 532
AC EV+WKPK+GQIGK EKEYE+ILK+T++SIC+L +NPNTTTS+IIQVV DDG+LLPCA
Sbjct: 62 ACIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCA 121
Query: 531 INAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL 352
INAACAALVDA IP+KHLAVAICCCL +SGYV+LDP K+EE+KM AFAYLVFPN+ +S++
Sbjct: 122 INAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISII 181
Query: 351 PE----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 205
PE +EGE +EHGIITSVTHGVMSVDDY C+E G+AA+ +SAF R++ Q
Sbjct: 182 PEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQ 234
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 373 bits (957), Expect = 2e-101
Identities = 176/232 (75%), Positives = 206/232 (88%), Gaps = 4/232 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
MEI R+DGR NQLRPLACSRNIL+R HGSASWSQGDTKVLAAVYGPK GT+KNENPEKA
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
C EV+WKPK+GQIGK EKEYE+ILK+T++SIC+L +NPNTTTS+IIQVV DDG+LLPCAI
Sbjct: 61 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDA IP+KHLAVAICCCL +SGYV+LDP K+EE+KM AFAYLVFPN+ +S++P
Sbjct: 121 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 205
E +EGE +EHGIITSVTHGVMSVDDY C+E G+AA+ +SAF R++ Q
Sbjct: 181 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQ 232
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 372 bits (955), Expect = 4e-101
Identities = 180/232 (77%), Positives = 202/232 (87%), Gaps = 4/232 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
MEIDR+DGR P+QLRPL+CS N+LHR HGSASWSQGDTKV AAVYGPK GT+KNENPEKA
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
C EVIWKPK+GQIGK E+EYEMILK+T+QSIC+LT+NPNTTTS+I+Q V+DDG+LL CAI
Sbjct: 61 CVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDA IPMKHLAVAICCCLAD GYV+LDP KLEE+KM FAYLVFPN+ LSVL
Sbjct: 121 NAACAALVDARIPMKHLAVAICCCLADVGYVILDPTKLEEQKMKGFAYLVFPNSVLSVLL 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 205
E VEGE EHGIITSVTHGVM V++Y CVE GRAA+A LS F RK+ Q
Sbjct: 181 EGSSLVEGESTEHGIITSVTHGVMPVEEYLKCVERGRAASAKLSDFLRKSLQ 232
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative
[Ricinus communis]
Length = 211
Score = 356 bits (912), Expect = 4e-096
Identities = 169/206 (82%), Positives = 189/206 (91%), Gaps = 4/206 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
M+IDR+DGR PNQLRPLACSRN+L+R HGSASW QGDTKVLAAVYGPKPGT+KNENPEKA
Sbjct: 1 MDIDRDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
C EVIWKPK+GQIGK EKEYEMILK+T+Q+ICVLT+NPNTTTSVI+QVVHDDG+LL CAI
Sbjct: 61 CIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDGALLTCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDAGIPMKHLAVAICCCL++SGYV+LDP KLEE+KM F YLVFPN+ SVL
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLSESGYVILDPTKLEEQKMKGFTYLVFPNSVHSVLQ 180
Query: 348 E----VEGEPVEHGIITSVTHGVMSV 283
+ VEGEP++HGIITSVTHGVMSV
Sbjct: 181 KESVLVEGEPMDHGIITSVTHGVMSV 206
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin;
3 exoribonuclease [Medicago truncatula]
Length = 241
Score = 345 bits (883), Expect = 9e-093
Identities = 165/230 (71%), Positives = 194/230 (84%), Gaps = 6/230 (2%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
MEIDR DGR PNQLRPLACS ++LHR HGSA+W+QG+TKVLAAVYGPK GT+KNENPEKA
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
EVIWKP +G +G+A++EYEMILKKT++SIC+ T+ PNTTTSVI VVHDDG+LLPCAI
Sbjct: 61 SIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVI--VVHDDGALLPCAI 118
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 349
NAACAALVDAGIP++HLAVAICC + D+ ++LDP+K EE+K AFAYLVFPNTT+SV+P
Sbjct: 119 NAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNTTVSVVP 178
Query: 348 E----VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKN 211
E V +P+ HGIITSVTHG MSVDDY C+E GRA T LS F RKN
Sbjct: 179 EKSSQVGNDPMAHGIITSVTHGAMSVDDYLHCLERGRATTQRLSEFLRKN 228
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 312 bits (797), Expect = 9e-083
Identities = 157/244 (64%), Positives = 187/244 (76%), Gaps = 4/244 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 352
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 351 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ-QTQGAV*K 181
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q Q G V +
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDVLE 240
Query: 180 HEIH 169
H H
Sbjct: 241 HHHH 244
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
Length = 238
Score = 308 bits (788), Expect = 1e-081
Identities = 152/232 (65%), Positives = 182/232 (78%), Gaps = 3/232 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 352
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 351 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q+
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQK 232
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica
Group]
Length = 238
Score = 308 bits (788), Expect = 1e-081
Identities = 152/232 (65%), Positives = 182/232 (78%), Gaps = 3/232 (1%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 529
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGSLLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 528 NAACAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL- 352
NA CAALV AGIP+KHLAVAI C + + G V+LD NK EE+++ +FA+LVFPN+ S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 351 --PEVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
P + E E G+ITS+THGVMS +DYF C+E G AA++ +S F R Q+
Sbjct: 181 KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISHFMRTTLQK 232
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760
[Sorghum bicolor]
Length = 239
Score = 306 bits (783), Expect = 4e-081
Identities = 148/228 (64%), Positives = 181/228 (79%), Gaps = 3/228 (1%)
Frame = -1
Query: 876 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEV 697
R DGR PNQLRP +C+ N LHR HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA EV
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65
Query: 696 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 517
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSLLPCAINA+C
Sbjct: 66 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPCAINASC 125
Query: 516 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSV---LPE 346
AAL AGIPMKHLAVAICC + D+G V+LD + EE++ +FA+LVFPN+ SV P
Sbjct: 126 AALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSVDSKDPM 185
Query: 345 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
+ E E G+I+ +THG MS D+YF C+E G AA++ +S F RK Q+
Sbjct: 186 QKDEESERGLISCITHGTMSEDNYFNCIERGIAASSKISDFMRKTLQK 233
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum
vulgare subsp. vulgare]
Length = 240
Score = 302 bits (773), Expect = 5e-080
Identities = 148/229 (64%), Positives = 183/229 (79%), Gaps = 3/229 (1%)
Frame = -1
Query: 879 DREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFE 700
+R GR+ NQLR +C+RN L R HGSA W+QGDT VLAAVYGP+PGTRK ENPEKA E
Sbjct: 6 ERAGGRKANQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLE 65
Query: 699 VIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAA 520
V+WKPK+GQIG+ EKEYEM LK+T+QSIC+LTV+PNTTTS+I+QV+ DDGSLLPCAINA+
Sbjct: 66 VVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAINAS 125
Query: 519 CAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSV---LP 349
CAALV AGIPMKHLAVAI C + G V+LD +K EE+++ +FA+LVFPN++LSV P
Sbjct: 126 CAALVFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPNSSLSVDVKEP 185
Query: 348 EVEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
+ + E G+ITS+THGVMS DDYF C+E G AA+A +S F R Q+
Sbjct: 186 QQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARISDFMRTTLQK 234
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 301 bits (770), Expect = 1e-079
Identities = 146/228 (64%), Positives = 177/228 (77%), Gaps = 3/228 (1%)
Frame = -1
Query: 876 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEV 697
R DGR PNQLRP C+ N LHR HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA EV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66
Query: 696 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 517
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSL+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 516 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVL---PE 346
AAL AGIPMKHLAVAI C + D+G V+LD ++ EE++ +FA+LVFPN+ SV P
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDPT 186
Query: 345 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
E E G+IT +THG MS DDYF C+E G A++ +S F RK Q+
Sbjct: 187 QRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQK 234
>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
Length = 240
Score = 296 bits (756), Expect = 5e-078
Identities = 144/228 (63%), Positives = 176/228 (77%), Gaps = 3/228 (1%)
Frame = -1
Query: 876 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEV 697
R DGR PNQLRP C+ N LHR HGSA W+QGDT VLAAVYGPK GTRK ENPEKA EV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 696 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAAC 517
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QVV DDGSL+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 516 AALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLPE--- 346
AAL AGIPMKHLAVAI C + D+G V+LD ++ EE++ +FA+LVFPN+ SV +
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDTT 186
Query: 345 VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQ 202
E E G+IT +THG MS DDYF C+E G A++ +S F RK Q+
Sbjct: 187 QRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQK 234
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 256
Score = 253 bits (646), Expect = 3e-065
Identities = 125/231 (54%), Positives = 166/231 (71%), Gaps = 4/231 (1%)
Frame = -1
Query: 879 DREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFE 700
+R DGR +QLRPL+ SR +L R HGSA+WSQ +T VLAAVYGPKP K EN E+A E
Sbjct: 18 ERADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIE 77
Query: 699 VIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAA 520
V+W+ KSG G EK+ E++++++++ I + ++PNT SVI+QV++DDGSLL CA+NAA
Sbjct: 78 VVWRAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACAMNAA 137
Query: 519 CAALVDAGIPMKHLAVAICCCLADSGYVVLDPNKLEEKKMTAFAYLVFPNTTLSVLPE-- 346
CAALVDAGIP+ L A+ C + G V LDP K EE+K A+ VFP+ LS +PE
Sbjct: 138 CAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVFPSRRLSAVPELP 197
Query: 345 --VEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQT 199
V+GEPVE+GI+TSVT G M V++YF CVEN RAA A +S F R + +Q+
Sbjct: 198 ADVDGEPVEYGILTSVTRGAMEVEEYFSCVENCRAAAAKVSEFSRSSIEQS 248
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa
Japonica Group]
Length = 248
Score = 183 bits (464), Expect = 4e-044
Identities = 87/118 (73%), Positives = 99/118 (83%)
Frame = -1
Query: 888 MEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 709
ME R DGR PNQLRP +C+RN L R HGSA W+QGDT VLAAVYGPKPGTRK ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 708 CFEVIWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 535
EV+WKP +GQIGK EKEYEM LK+T+QSIC+LTV+PNTTTSVI+QVV +DGS+ C
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSVSFC 118
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
Length = 149
Score = 169 bits (428), Expect = 5e-040
Identities = 77/105 (73%), Positives = 90/105 (85%)
Frame = -1
Query: 876 REDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEV 697
R DGR PNQLRP C+ N LHR HGSA W+QGDT VLAAVYGPK GTRK ENPEKA EV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 696 IWKPKSGQIGKAEKEYEMILKKTIQSICVLTVNPNTTTSVIIQVV 562
+WKPK+GQIG+ E+EYEM LK+T+QSIC+LTV+PNTTTSV++QV+
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVM 111
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 140
Score = 156 bits (393), Expect = 6e-036
Identities = 74/90 (82%), Positives = 81/90 (90%)
Frame = -1
Query: 813 RPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKACFEVIWKPKSGQIGKAEKEYEMILK 634
R G + +GDTKVLAAVYGPK GT+KNEN EKACFEVIWKPK+GQIGK EKEYEMILK
Sbjct: 20 RSTGDRRYEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIGKVEKEYEMILK 79
Query: 633 KTIQSICVLTVNPNTTTSVIIQVVHDDGSL 544
+T+QSICVLTVNPNTTTSVIIQVVHDDGS+
Sbjct: 80 RTMQSICVLTVNPNTTTSVIIQVVHDDGSI 109
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796
[Arabidopsis lyrata subsp. lyrata]
Length = 159
Score = 154 bits (389), Expect = 2e-035
Identities = 71/74 (95%), Positives = 73/74 (98%)
Frame = -1
Query: 891 AMEIDREDGRRPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEK 712
A+EIDREDGR P+QLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEK
Sbjct: 23 AIEIDREDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEK 82
Query: 711 ACFEVIWKPKSGQI 670
ACFEVIWKPKSGQI
Sbjct: 83 ACFEVIWKPKSGQI 96
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,183,829,113,609
Number of Sequences: 15229318
Number of Extensions: 1183829113609
Number of Successful Extensions: 337516149
Number of sequences better than 0.0: 0
|
