BLASTX 7.6.2
Query= UN10066 /QuerySize=961
(960 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G53120.1 | Symbols: VPS37-1 | VPS37-1 | chr3:1... 283 1e-076
TAIR9_protein||AT2G36680.1 | Symbols: | LOCATED IN: ESCRT I com... 272 2e-073
TAIR9_protein||AT2G36680.2 | Symbols: | LOCATED IN: ESCRT I com... 201 5e-052
TAIR9_protein||AT2G36680.3 | Symbols: | LOCATED IN: ESCRT I com... 201 5e-052
TAIR9_protein||AT2G36680.4 | Symbols: | LOCATED IN: ESCRT I com... 201 5e-052
>TAIR9_protein||AT3G53120.1 | Symbols: VPS37-1 | VPS37-1 |
chr3:19690729-19692490 REVERSE
Length = 218
Score = 283 bits (723), Expect = 1e-076
Identities = 151/174 (86%), Positives = 155/174 (89%), Gaps = 7/174 (4%)
Frame = +1
Query: 142 MFNFWGSKD-QQGQSRPPPEVSSSSQQQQPWYSPSLVSSPSSSSRPQTSGHIPAHVSPGE 318
MFNFWGSKD QQGQSRP + Q PWYSPSLVSSP SSSRPQ+SG I A VSPGE
Sbjct: 1 MFNFWGSKDQQQGQSRP-----QEASSQSPWYSPSLVSSP-SSSRPQSSGQISAQVSPGE 54
Query: 319 AAGIITFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARENLEK 498
AAGII FLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLAR+NLEK
Sbjct: 55 AAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEK 114
Query: 499 EPQITELRNQCRIIRTTELAAAQEKLNELERQKEEILKFYSPASLLNKLQEAMN 660
EPQI ELRNQCRIIRTTELA AQEKLNELERQKEEILKFYSP SLL+KLQEAMN
Sbjct: 115 EPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAMN 168
Score = 93 bits (230), Expect = 2e-019
Identities = 47/49 (95%)
Frame = +2
Query: 662 QVDEESEALQEKFLEKEIDTAAFVQKYKKLRTIYHRRALIHLAAKTSTI 808
QVDEESEALQEKFLEKEIDTAAFVQKYKKLRT YHRRALIHLAAKTS I
Sbjct: 169 QVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217
>TAIR9_protein||AT2G36680.1 | Symbols: | LOCATED IN: ESCRT I complex; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851);
BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1);
Has 348 Blast hits to 348 proteins in 85 species: Archae - 1; Bacteria
- 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other
Eukaryotes - 51 (source: NCBI BLink). | chr2:15368980-15370726 REVERSE
Length = 219
Score = 272 bits (695), Expect = 2e-073
Identities = 141/174 (81%), Positives = 155/174 (89%), Gaps = 7/174 (4%)
Frame = +1
Query: 142 MFNFWGSKD-QQGQSRPPPEVSSSSQQQQPWYSPSLVSSPSSSSRPQTSGHIPAHVSPGE 318
MFNFWGSK+ QQGQSRP PE S++ PWYSPSLV+SP SSSRPQTSG IP+HVSPGE
Sbjct: 1 MFNFWGSKEQQQGQSRPSPEASAT-----PWYSPSLVTSP-SSSRPQTSGQIPSHVSPGE 54
Query: 319 AAGIITFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARENLEK 498
AAGII LKDKSVDELRKLLSDKDAYQQFL SLDQV +QNNI++ELR+ETL LARENLEK
Sbjct: 55 AAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEK 114
Query: 499 EPQITELRNQCRIIRTTELAAAQEKLNELERQKEEILKFYSPASLLNKLQEAMN 660
EPQI ELRNQCRIIRT+ELA AQEKLNELE Q+EEILKFYSP SLL++LQ+AMN
Sbjct: 115 EPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQDAMN 168
Score = 89 bits (219), Expect = 4e-018
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = +2
Query: 662 QVDEESEALQEKFLEKEIDTAAFVQKYKKLRTIYHRRALIHLAAKTSTIG* 814
QVDEESE LQ+KF+EK+IDTAAFVQKYKKLR+ YHRRALIHLAAKTS+IG*
Sbjct: 169 QVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSIG* 219
>TAIR9_protein||AT2G36680.2 | Symbols: | LOCATED IN: ESCRT I complex; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851);
BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1);
Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr2:15369314-15370726 REVERSE
Length = 140
Score = 201 bits (511), Expect = 5e-052
Identities = 105/130 (80%), Positives = 114/130 (87%), Gaps = 7/130 (5%)
Frame = +1
Query: 142 MFNFWGSKD-QQGQSRPPPEVSSSSQQQQPWYSPSLVSSPSSSSRPQTSGHIPAHVSPGE 318
MFNFWGSK+ QQGQSRP PE S++ PWYSPSLV+SP SSSRPQTSG IP+HVSPGE
Sbjct: 1 MFNFWGSKEQQQGQSRPSPEASAT-----PWYSPSLVTSP-SSSRPQTSGQIPSHVSPGE 54
Query: 319 AAGIITFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARENLEK 498
AAGII LKDKSVDELRKLLSDKDAYQQFL SLDQV +QNNI++ELR+ETL LARENLEK
Sbjct: 55 AAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEK 114
Query: 499 EPQITELRNQ 528
EPQI ELRNQ
Sbjct: 115 EPQIVELRNQ 124
>TAIR9_protein||AT2G36680.3 | Symbols: | LOCATED IN: ESCRT I complex; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851);
BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1);
Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr2:15369314-15370726 REVERSE
Length = 169
Score = 201 bits (511), Expect = 5e-052
Identities = 105/130 (80%), Positives = 114/130 (87%), Gaps = 7/130 (5%)
Frame = +1
Query: 142 MFNFWGSKD-QQGQSRPPPEVSSSSQQQQPWYSPSLVSSPSSSSRPQTSGHIPAHVSPGE 318
MFNFWGSK+ QQGQSRP PE S++ PWYSPSLV+SP SSSRPQTSG IP+HVSPGE
Sbjct: 1 MFNFWGSKEQQQGQSRPSPEASAT-----PWYSPSLVTSP-SSSRPQTSGQIPSHVSPGE 54
Query: 319 AAGIITFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARENLEK 498
AAGII LKDKSVDELRKLLSDKDAYQQFL SLDQV +QNNI++ELR+ETL LARENLEK
Sbjct: 55 AAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEK 114
Query: 499 EPQITELRNQ 528
EPQI ELRNQ
Sbjct: 115 EPQIVELRNQ 124
>TAIR9_protein||AT2G36680.4 | Symbols: | LOCATED IN: ESCRT I complex; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851);
BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1);
Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr2:15369314-15370726 REVERSE
Length = 169
Score = 201 bits (511), Expect = 5e-052
Identities = 105/130 (80%), Positives = 114/130 (87%), Gaps = 7/130 (5%)
Frame = +1
Query: 142 MFNFWGSKD-QQGQSRPPPEVSSSSQQQQPWYSPSLVSSPSSSSRPQTSGHIPAHVSPGE 318
MFNFWGSK+ QQGQSRP PE S++ PWYSPSLV+SP SSSRPQTSG IP+HVSPGE
Sbjct: 1 MFNFWGSKEQQQGQSRPSPEASAT-----PWYSPSLVTSP-SSSRPQTSGQIPSHVSPGE 54
Query: 319 AAGIITFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARENLEK 498
AAGII LKDKSVDELRKLLSDKDAYQQFL SLDQV +QNNI++ELR+ETL LARENLEK
Sbjct: 55 AAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEK 114
Query: 499 EPQITELRNQ 528
EPQI ELRNQ
Sbjct: 115 EPQIVELRNQ 124
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,526,529,529
Number of Sequences: 33410
Number of Extensions: 5526529529
Number of Successful Extensions: 205441165
Number of sequences better than 0.0: 0
|
