BLASTX 7.6.2
Query= UN10170 /QuerySize=953
(952 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G62880.1 | Symbols: | cornichon family protei... 260 9e-070
TAIR9_protein||AT1G12390.1 | Symbols: | cornichon family protei... 250 1e-066
TAIR9_protein||AT1G12340.1 | Symbols: | FUNCTIONS IN: molecular... 212 4e-055
TAIR9_protein||AT4G12090.1 | Symbols: | cornichon family protei... 186 3e-047
TAIR9_protein||AT3G12180.1 | Symbols: | cornichon family protei... 135 6e-032
TAIR9_protein||AT1G62880.2 | Symbols: | cornichon family protei... 53 2e-007
>TAIR9_protein||AT1G62880.1 | Symbols: | cornichon family protein |
chr1:23292125-23293307 FORWARD
Length = 138
Score = 260 bits (664), Expect = 9e-070
Identities = 123/138 (89%), Positives = 131/138 (94%)
Frame = -2
Query: 699 MGDVWTWIISFLILITLVGFIVYQLICLADLEFDYINPYDSASRINFVVLPEFILQGFLC 520
MG+VWTWIISFLILITL+G IVYQLI LADLEFDYINPYDSASRINFVVLPE ILQGFLC
Sbjct: 1 MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60
Query: 519 FFYLVTGHWFMSLLGVPYLYYNFQLYSKRQHLVDVTEIFNLLDWEKKKRLFKLAYMILTL 340
FYLVTGHWFM+LL VPYLYYNF LYS++QHL+DVTEIFNLLDWEKKKRLFKLAY+ILTL
Sbjct: 61 VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120
Query: 339 FLTIFWLIYSTLDDHED* 286
FLTIFWLIYSTLDD+ED*
Sbjct: 121 FLTIFWLIYSTLDDYED* 138
>TAIR9_protein||AT1G12390.1 | Symbols: | cornichon family protein |
chr1:4220347-4221481 FORWARD
Length = 138
Score = 250 bits (637), Expect = 1e-066
Identities = 114/138 (82%), Positives = 126/138 (91%)
Frame = -2
Query: 699 MGDVWTWIISFLILITLVGFIVYQLICLADLEFDYINPYDSASRINFVVLPEFILQGFLC 520
MGD+WTW+ISF LI LVG IVYQL+CLADLEFDYINPYDSASRIN VVLPEFI+QG LC
Sbjct: 1 MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60
Query: 519 FFYLVTGHWFMSLLGVPYLYYNFQLYSKRQHLVDVTEIFNLLDWEKKKRLFKLAYMILTL 340
FYL+TGHWFM+LL +PYLYYNF LYSKRQHLVDVTEIFNLL+WEKKKRLFKLAY++L L
Sbjct: 61 VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120
Query: 339 FLTIFWLIYSTLDDHED* 286
FLTIFW+IYS LDD+ED*
Sbjct: 121 FLTIFWMIYSALDDYED* 138
>TAIR9_protein||AT1G12340.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN:
membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage; CONTAINS
InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis
thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1);
Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria
- 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other
Eukaryotes - 34 (source: NCBI BLink). | chr1:4197396-4198032 FORWARD
Length = 130
Score = 212 bits (538), Expect = 4e-055
Identities = 96/117 (82%), Positives = 108/117 (92%)
Frame = -2
Query: 636 VYQLICLADLEFDYINPYDSASRINFVVLPEFILQGFLCFFYLVTGHWFMSLLGVPYLYY 457
++ L+CLADLEFDYINPYDSASRIN VVLPEFI+QG LC FYL+TGHWFM+LL +PYLYY
Sbjct: 14 IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73
Query: 456 NFQLYSKRQHLVDVTEIFNLLDWEKKKRLFKLAYMILTLFLTIFWLIYSTLDDHED* 286
NF LYSKRQHLVDVTEIFNLL+WEKKKRLFKLAY++L LFLTIFW+IYS LDD+ED*
Sbjct: 74 NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYED* 130
>TAIR9_protein||AT4G12090.1 | Symbols: | cornichon family protein |
chr4:7242165-7242924 REVERSE
Length = 136
Score = 186 bits (470), Expect = 3e-047
Identities = 80/134 (59%), Positives = 109/134 (81%)
Frame = -2
Query: 699 MGDVWTWIISFLILITLVGFIVYQLICLADLEFDYINPYDSASRINFVVLPEFILQGFLC 520
MGD+ WIISFL L TL+ ++YQL CLADLEFD INPYD +SRIN +VLPEF LQG LC
Sbjct: 1 MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60
Query: 519 FFYLVTGHWFMSLLGVPYLYYNFQLYSKRQHLVDVTEIFNLLDWEKKKRLFKLAYMILTL 340
+Y++TGHWFM++L +P+L+YN +LY KR+HL DVTE++N WE+KKR++K+ ++ L++
Sbjct: 61 LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120
Query: 339 FLTIFWLIYSTLDD 298
F+T +WLI+S L D
Sbjct: 121 FITTYWLIHSALGD 134
>TAIR9_protein||AT3G12180.1 | Symbols: | cornichon family protein |
chr3:3883464-3884570 FORWARD
Length = 147
Score = 135 bits (338), Expect = 6e-032
Identities = 60/138 (43%), Positives = 93/138 (67%), Gaps = 4/138 (2%)
Frame = -2
Query: 693 DVWTWIISFLILITLVGFIVYQLICLADLEFDYINPYDSASRINFVVLPEFILQGFLCFF 514
D++ WI+SF + + LV + YQ+ICL DLE DY+NP+++++RIN +V+PEFILQG LC
Sbjct: 4 DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63
Query: 513 YLVTGHWFMSLLGVPYLYYNFQLYSKRQHLVDVTEIFNLLDWEKKKRLFKLAYMILTLFL 334
+L+T HW L+ VP Y+ LY +R++L+DVTE+F + +EKK R KL + + +
Sbjct: 64 FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123
Query: 333 TIFWL----IYSTLDDHE 292
+F L +YS +D +
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141
>TAIR9_protein||AT1G62880.2 | Symbols: | cornichon family protein |
chr1:23292125-23294473 FORWARD
Length = 51
Score = 53 bits (126), Expect = 2e-007
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = -2
Query: 699 MGDVWTWIISFLILITLVGFIVYQLIC 619
MG+VWTWIISFLILITL+G IVYQ++C
Sbjct: 1 MGEVWTWIISFLILITLLGLIVYQVLC 27
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,616,215,784
Number of Sequences: 33410
Number of Extensions: 5616215784
Number of Successful Extensions: 210627147
Number of sequences better than 0.0: 0
|
