BLASTX 7.6.2
Query= UN10316 /QuerySize=1075
(1074 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 502 3e-142
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 329 3e-090
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 316 2e-086
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 238 7e-063
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 213 2e-055
TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDI... 71 9e-013
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 69 6e-012
TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPR... 67 2e-011
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 502 bits (1290), Expect = 3e-142
Identities = 253/306 (82%), Positives = 272/306 (88%), Gaps = 10/306 (3%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVMRDPSG SKGSGFVAFSAASEASRVLNEMNGKMV GKPLYVALAQRKEERRAKLQAQF
Sbjct: 358 KVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQF 417
Query: 183 SQMRPAFIPGMGPRMPMFPGGAPGLGQPMFYGQGPPQMIPHQTGFGYQPQMVPGMRPGYF 362
SQMRPAFIPG+GPRMP+F GGAPGLGQ +FYGQGPP +IPHQ GFGYQPQ+VPGMRP +F
Sbjct: 418 SQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFF 477
Query: 363 -GPMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQMMAGGRGHRYPR-GRNMQDGPM 536
GPMMQPGQQGPRPGGRRSGDGPMRHQ QQPMPYMQPQMM GRG+RYP GRNM DGPM
Sbjct: 478 GGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPM 537
Query: 537 PGGMVPFPYDINGVPL---MPAGALASSLAQASPAHQRTILGETLYPLVNKIEHENAAKV 707
PGGMVP YD+N +P M AG LA+SLA A+PA QRT+LGE+LYPLV++IE E+AAKV
Sbjct: 538 PGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKV 597
Query: 708 TGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSE-----GKSGSPSDMMASLS 872
TGMLLEMDQTEVLHL+ESPEALNAKVSEALDVLRNVNQPS KSGSPSD++ASLS
Sbjct: 598 TGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLS 657
Query: 873 INDHL* 890
INDHL*
Sbjct: 658 INDHL* 663
Score = 50 bits (118), Expect = 2e-006
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 6 VMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQFS 185
VMRD G S+ GFV F +A+R + +NGK K YV AQ+K ER +L ++
Sbjct: 256 VMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYE 315
Query: 186 Q 188
Q
Sbjct: 316 Q 316
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 329 bits (841), Expect = 3e-090
Identities = 189/321 (58%), Positives = 225/321 (70%), Gaps = 34/321 (10%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVMRDPSG S+GSGFVAFS EA+R + EMNGKM+ KPLYVALAQRKE+R+A+LQAQF
Sbjct: 357 KVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQF 416
Query: 183 SQMRPAFI-PGMGPRMPMFPGGAPGLGQPMFYGQGPPQMIPHQTGFGYQPQMVPGMRPG- 356
SQMRP + P +GPRM M+P G P +GQ +FYGQGPP MIP Q GFGYQ Q+VPGMRPG
Sbjct: 417 SQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFGYQQQLVPGMRPGG 475
Query: 357 -----YFGPMMQPG-------QQGPRPGGRRSGDGPMRHQPQQPMPYMQPQMMAGGRGHR 500
+F PMMQ G QQ RPGG R G P QPQQP P MQ QM GR +R
Sbjct: 476 SPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALP---QPQQPSPMMQQQMHPRGRMYR 532
Query: 501 YP-RGRNMQDGPMPGGMVPFPYDIN---GV--------PLMPAGALASSLAQASPAHQRT 644
YP R N GP M+ PYD++ GV +P ALA+ LA A+P QRT
Sbjct: 533 YPQRDVNTMPGPTQ-NMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRT 591
Query: 645 ILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQP 824
+LGE LYPLV ++E E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V Q
Sbjct: 592 MLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQ 651
Query: 825 SEGKSGSPSDMMASLSINDHL 887
++G +D +ASLS+ D++
Sbjct: 652 ---QAGGAADQLASLSLGDNI 669
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 316 bits (809), Expect = 2e-086
Identities = 169/278 (60%), Positives = 204/278 (73%), Gaps = 18/278 (6%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVMRDP+G SKGSGFVAF+ EA+ +++++GKM+ KPLYVA+AQRKE+RR +LQAQF
Sbjct: 348 KVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQF 407
Query: 183 SQMRP-AFIPGMGPRMPMFPGGAPGLGQPMFYGQGPPQMIPHQTGFGYQPQMVPGMRPG- 356
SQ+RP A P +GPRMP++P G PG+GQ MFYGQ PP MIP Q G+GYQ Q+VPGMRPG
Sbjct: 408 SQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGG 467
Query: 357 -----YFGPMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQMMAGGRGHRYPRGRNM 521
+F PM+QP QQ RPGG R G Q Q PM MQ QM GR RYP+GR
Sbjct: 468 GPVPSFFMPMVQPQQQ--RPGGGRRPGGIQHSQQQNPM--MQQQMHPRGRMFRYPQGRG- 522
Query: 522 QDGPMPGGMVPFPYDINGVPLMPAGALASSLAQASPAHQRTILGETLYPLVNKIEHENAA 701
G VP PYD+ + GALAS+L+ A+P QRT+LGE LYPLV ++E E+AA
Sbjct: 523 -----GSGDVP-PYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAA 576
Query: 702 KVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNV 815
KVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V
Sbjct: 577 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV 614
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 238 bits (605), Expect = 7e-063
Identities = 147/302 (48%), Positives = 180/302 (59%), Gaps = 30/302 (9%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVM +P G S+G GFVA+S EA R L+EMNGKM+ KPLY+ALAQRKE+RRA LQA F
Sbjct: 362 KVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALF 421
Query: 183 SQMRPAFIPGMGPRMPMFPGG-APGLGQPMFYGQGPPQMIPHQ-TGFGYQPQMVPGMRPG 356
SQ+R PG PGG PG Q M+ GQ M+P Q G+G+QPQ +PGMRPG
Sbjct: 422 SQIR---APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPG 478
Query: 357 YFG-------PMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQMMAGGRGHRY---- 503
P+ + Q GPR G RR +H QQ + + P G RY
Sbjct: 479 SGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNP-----SPGMRYMNGA 533
Query: 504 PRGRNMQDGPMPGG----MVPFPYDINGV-----PLMPAGALASSLAQASPAHQRTILGE 656
GRN D +P G ++P P D + + PL+P L SSLA ASPA + +LGE
Sbjct: 534 SNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGE 593
Query: 657 TLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSEGK 836
LYPLV + E + AKVTGMLLEMDQ E+LHL+ESPEAL +KVSEALDVLR P++
Sbjct: 594 QLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHD 653
Query: 837 SG 842
G
Sbjct: 654 LG 655
Score = 51 bits (121), Expect = 1e-006
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = +3
Query: 6 VMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQFS 185
VMRD SG S+ GFV F A+ + +MNG + LYV AQ+K ER +L+ +F
Sbjct: 260 VMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE 319
Query: 186 QMR 194
Q R
Sbjct: 320 QER 322
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 213 bits (541), Expect = 2e-055
Identities = 138/301 (45%), Positives = 169/301 (56%), Gaps = 31/301 (10%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVM + G S+G GFVA+S EA + EMNGKM+ KPLYVALAQRKEER+A LQ+ F
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLF 417
Query: 183 SQMR-PAFIPGMGPRMPMF---PGGAP--GLGQPMFYGQGPPQMIPHQ-TGFGYQPQMVP 341
+Q+R P + + M F P G P G PMF G ++P Q G+GYQ Q +P
Sbjct: 418 TQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMP 477
Query: 342 GMRPGYFG-------PMMQPGQQGPRPGGRRSGDGPMRHQPQQPMPYMQPQMMAGGRGHR 500
GMRPG P+ + Q GPR G RR + + QQ M GG G+R
Sbjct: 478 GMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNR 537
Query: 501 YPRGRNMQDGPMPGGMVPFPYDING------------VPLMPAGALASSLAQASPAHQRT 644
RN + P G++P P + + PL LAS LA ASP
Sbjct: 538 ----RNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPL-TISKLASDLALASPDKHPR 592
Query: 645 ILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQP 824
+LG+ LYPLV + E NAAKVTGMLLEMDQ E+LHL+ESPEAL AKVSEALDVLR P
Sbjct: 593 MLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADP 652
Query: 825 S 827
+
Sbjct: 653 A 653
>TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1);
RNA binding / translation initiation factor | chr1:12433356-12434735
REVERSE
Length = 408
Score = 71 bits (173), Expect = 9e-013
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
KVM +G SKG GFV FS + EAS+ + +MNGKMV KP+YV+LAQ KE+ + LQ QF
Sbjct: 253 KVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Query: 183 SQMRPA 200
+ P+
Sbjct: 313 NNPPPS 318
Score = 49 bits (114), Expect = 6e-006
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 6 VMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
VM+D G S+ GFV F A A + +MNG +V K L+V AQRK R L+A+F
Sbjct: 150 VMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 208
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 69 bits (166), Expect = 6e-012
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = +3
Query: 3 KVMRDPSGASKGSGFVAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQF 182
K+M D G SKG GFV FS EA + +G+M GKPLYVA+AQ+KE+R+ +LQ QF
Sbjct: 334 KLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
Query: 183 SQMRPAFIPGMGPRMPMFPGGAPGLGQPMFYGQGPPQMI 299
A + PG P++Y P M+
Sbjct: 394 GNRVEA------RKSSSSASVNPGTYAPLYYTNTHPGMV 426
Score = 67 bits (163), Expect = 1e-011
Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Frame = +3
Query: 645 ILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLR----N 812
+LGE L+PLV K+E + A K+TGMLLEMD++E+L L++SPE L +V EA +VL+ N
Sbjct: 528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTN 587
Query: 813 VNQPSEGKSGSPSDMMASLSI 875
+ P+ +S + +A +SI
Sbjct: 588 LTAPNTHRSDYLASGIAGVSI 608
>TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPRESSED PAB
C-TERMINAL); poly(A) binding | chr3:6705526-6705929 FORWARD
Length = 104
Score = 67 bits (162), Expect = 2e-011
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +3
Query: 612 LAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSE 791
LA P QR ++GETL+ +V ++E + A K+TGM+LE+DQ +VLHL+ +P+A V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 792 ALDVL 806
A++VL
Sbjct: 83 AMEVL 87
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,707,741,344
Number of Sequences: 33410
Number of Extensions: 5707741344
Number of Successful Extensions: 215986263
Number of sequences better than 0.0: 0
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