BLASTX 7.6.2
Query= UN11023 /QuerySize=671
(670 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homol... 359 9e-099
sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homol... 299 2e-080
sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homol... 113 1e-024
sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 OS=Mus muscu... 72 2e-012
sp|O95758|ROD1_HUMAN Regulator of differentiation 1 OS=Homo sapi... 54 8e-007
sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 OS=Rattus norv... 54 8e-007
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1
OS=Arabidopsis thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 359 bits (921), Expect = 9e-099
Identities = 177/195 (90%), Positives = 189/195 (96%)
Frame = +2
Query: 86 SSSSQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKTNVGANRNQAFVEFAE 265
S +QFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTK+NVGANRNQAFVEFA+
Sbjct: 4 SGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFAD 63
Query: 266 VNQAISMVSYYASSSEPAQIRGKTVYIQYSNRNEIVNNQSPGEVPGNVLLVTFEGVESHD 445
+NQAISMVSYYASSSEPAQIRGKTVYIQYSNR+EIVNNQSPG+VPGNVLLVTFEGVESH+
Sbjct: 64 LNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHE 123
Query: 446 VSIDVIHLVFSAYGFVHKIATFEKAAGFQALVQFTDVDTALAARTALDDRSIPKYLLPEH 625
VSIDVIHLVFSA+GFVHKIATFEKAAGFQALVQFTDV+TA AAR+ALD RSIP+YLL H
Sbjct: 124 VSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAH 183
Query: 626 VGSCNLRMSYSAHTD 670
VGSC+LRMSYSAHTD
Sbjct: 184 VGSCSLRMSYSAHTD 198
Score = 77 bits (187), Expect = 1e-013
Identities = 44/93 (47%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Frame = +2
Query: 392 EVPGNVLLVTFEGVESHDVSIDVIHLVFSAYGFVHKIATFEKAAGFQALVQFTDVDTALA 571
E NVLL E ++ + V++DV+H VFSAYG V KIA FEK QAL+Q++D+ TA
Sbjct: 239 ESQSNVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAM 297
Query: 572 ARTALDDRSIPKYLLPEHVGSCNLRMSYSAHTD 670
A+ AL+ I G C LR+SYS HTD
Sbjct: 298 AKEALEGHCI------YDGGYCKLRLSYSRHTD 324
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2
OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 299 bits (763), Expect = 2e-080
Identities = 144/196 (73%), Positives = 169/196 (86%)
Frame = +2
Query: 83 MSSSSQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKTNVGANRNQAFVEFA 262
+SS QFRYTQ PSKV+HLRNLPWEC EEELI+L K FG +VNTK NVGANRNQAF+EF
Sbjct: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFE 63
Query: 263 EVNQAISMVSYYASSSEPAQIRGKTVYIQYSNRNEIVNNQSPGEVPGNVLLVTFEGVESH 442
++NQAI M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ +V GNVLLVT EG ++
Sbjct: 64 DLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDAR 123
Query: 443 DVSIDVIHLVFSAYGFVHKIATFEKAAGFQALVQFTDVDTALAARTALDDRSIPKYLLPE 622
VSIDV+HLVFSA+GFVHKI TFEK AG+QALVQFTD +TA AA+ ALD RSIP+YLL E
Sbjct: 124 MVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAE 183
Query: 623 HVGSCNLRMSYSAHTD 670
VG C+L+++YSAHTD
Sbjct: 184 TVGQCSLKITYSAHTD 199
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3
OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 113 bits (282), Expect = 1e-024
Identities = 66/164 (40%), Positives = 104/164 (63%), Gaps = 9/164 (5%)
Frame = +2
Query: 122 SKVVHLRNLPWECVEEELIDLCKRFGKIVNTKTNVGANRNQAFVEFAEVNQAISMVSYYA 301
SKVVH+RN+ E E +L+ L + FG I TK + +NQA ++ +V+ A+S + ++
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF- 61
Query: 302 SSSEPAQIRGKTVYIQYSNRNEIV----NNQSPGEVPGNVLLVTFEGVESHDVSIDVIHL 469
++ +P IRG+ VY+Q+S+ E+ N + P +LLVT + + +++DV+H
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 470 VFSAYGFVHKIATFEKAAGFQALVQFTDVDTALAARTALDDRSI 601
VFS YGFV K+ TF+K+AGFQAL+Q+ A +ARTAL R+I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI 163
>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 OS=Mus musculus GN=Rod1
PE=2 SV=1
Length = 523
Score = 72 bits (176), Expect = 2e-012
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Frame = +2
Query: 116 TPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKTNVGANRNQAFVEFAEVNQAISMVSY 295
+PS+V+HLR +P + E E+I L FGK+ N G ++QAF+E A A++M++Y
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMINY 84
Query: 296 YASSSEPAQIRGKTVYIQYSNRNEIVNNQSPGEVPGNVLLVTFEGVESHDVSI 454
Y + +R + VYIQYSN E+ + P + L V+S ++S+
Sbjct: 85 YTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSL 135
Score = 50 bits (119), Expect = 9e-006
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 386 PGEVPGNVLLVTFEGVESHDVSIDVIHLVFSAYGFVHKIATFEKAAGFQALVQFTDVDTA 565
PG+ P VL + E + + V+++V+H +FS +G V KI TF K FQAL+Q+ D A
Sbjct: 147 PGQSP--VLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNA 203
Query: 566 LAARTALDDRSI 601
A+ ALD ++I
Sbjct: 204 QYAKMALDGQNI 215
>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 OS=Homo sapiens GN=ROD1
PE=1 SV=2
Length = 552
Score = 54 bits (128), Expect = 8e-007
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Frame = +2
Query: 353 SNRNEIVNNQSPGEVPGNVLLVTFEGVESHDVSIDVIHLVFSAYGFVHKIATFEKAAGFQ 532
SN ++ QSP VL + E + + V+++V+H +FS +G V KI TF K FQ
Sbjct: 169 SNEGTVLPGQSP------VLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQ 221
Query: 533 ALVQFTDVDTALAARTALDDRSIPKYLLPEHVGSCNLRMSYSAHT 667
AL+Q+ D A A+ ALD ++I + C LR+ +S T
Sbjct: 222 ALLQYADPVNAHYAKMALDGQNI-------YNACCTLRIDFSKLT 259
>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1
PE=2 SV=1
Length = 523
Score = 54 bits (128), Expect = 8e-007
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Frame = +2
Query: 353 SNRNEIVNNQSPGEVPGNVLLVTFEGVESHDVSIDVIHLVFSAYGFVHKIATFEKAAGFQ 532
SN ++ QSP VL + E + + V+++V+H +FS +G V KI TF K FQ
Sbjct: 140 SNEGTLLPGQSP------VLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQ 192
Query: 533 ALVQFTDVDTALAARTALDDRSIPKYLLPEHVGSCNLRMSYSAHT 667
AL+Q+ D A A+ ALD ++I + C LR+ +S T
Sbjct: 193 ALLQYADPVNAQYAKMALDGQNI-------YNACCTLRIDFSKLT 230
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,894,514,945
Number of Sequences: 518415
Number of Extensions: 45894514945
Number of Successful Extensions: 338263929
Number of sequences better than 0.0: 0
|
