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TAIR blast output of UN11036


BLASTX 7.6.2

Query= UN11036 /QuerySize=925
        (924 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA...    337   6e-093
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP...     78   8e-015

>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
        BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
        chr3:23327006-23328620 REVERSE

          Length = 407

 Score =  337 bits (864), Expect = 6e-093
 Identities = 180/211 (85%), Positives = 191/211 (90%), Gaps = 6/211 (2%)
 Frame = +2

Query:  23 MAALSSSSLFFSSKTAIPINNLTLIPPSLHRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 199
           MAALSSSSLFFSSKT  PI+NL LIPPSLHRFSLPSSSSSFSSL SSSSS+S   T SL+
Sbjct:   1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59

Query: 200 SSRRSSPQGFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 367
           +SRR SPQ FTVKA    EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct:  60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119

Query: 368 SDKMKKPPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 547
           S+KMKKPPF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct: 120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179

Query: 548 KSSGVKQFLFISSAGIYKSTEEPPSTSSTAL 640
           KSSGVKQFLFISSAGIYKSTE+PP     A+
Sbjct: 180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAV 210


 Score =  195 bits (494), Expect = 5e-050
 Identities = 94/103 (91%), Positives = 97/103 (94%)
 Frame = +1

Query: 616 SFNIFNCLSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFPFRNMHFYGEPR 795
           S NIFNC+SDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAF FRNMHFY EPR
Sbjct: 294 SGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPR 353

Query: 796 AAKDKLGWESKTNFPEDFKERFEEYVKIGRDKKDMKFELDDKI 924
           AAKD LGWESKTN PED KERFEEYVKIGRDKK++KFELDDKI
Sbjct: 354 AAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKI 396

>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
        BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
        FORWARD

          Length = 379

 Score =  78 bits (190), Expect = 8e-015
 Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +1

Query: 616 SFNIFNCLSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFPFRNMHFYGEP 792
           S  IFN   ++ VT DG+AK CA A G    EIVHY+PK      KKAFPFR+ HF+   
Sbjct: 267 SREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASV 326

Query: 793 RAAKDKLGWESKTNFPEDFKERFEEYVKIGRDKKDMKFELDDKI 924
             AK  LGW+ + +  E   + +      G  +K+  F  DD I
Sbjct: 327 EKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMI 370

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,057,924,028
Number of Sequences: 33410
Number of Extensions: 6057924028
Number of Successful Extensions: 221563250
Number of sequences better than 0.0: 0