BLASTX 7.6.2
Query= UN11036 /QuerySize=925
(924 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA... 337 6e-093
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP... 78 8e-015
>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
chr3:23327006-23328620 REVERSE
Length = 407
Score = 337 bits (864), Expect = 6e-093
Identities = 180/211 (85%), Positives = 191/211 (90%), Gaps = 6/211 (2%)
Frame = +2
Query: 23 MAALSSSSLFFSSKTAIPINNLTLIPPSLHRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 199
MAALSSSSLFFSSKT PI+NL LIPPSLHRFSLPSSSSSFSSL SSSSS+S T SL+
Sbjct: 1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59
Query: 200 SSRRSSPQGFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 367
+SRR SPQ FTVKA EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct: 60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119
Query: 368 SDKMKKPPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 547
S+KMKKPPF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct: 120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179
Query: 548 KSSGVKQFLFISSAGIYKSTEEPPSTSSTAL 640
KSSGVKQFLFISSAGIYKSTE+PP A+
Sbjct: 180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAV 210
Score = 195 bits (494), Expect = 5e-050
Identities = 94/103 (91%), Positives = 97/103 (94%)
Frame = +1
Query: 616 SFNIFNCLSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFPFRNMHFYGEPR 795
S NIFNC+SDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAF FRNMHFY EPR
Sbjct: 294 SGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPR 353
Query: 796 AAKDKLGWESKTNFPEDFKERFEEYVKIGRDKKDMKFELDDKI 924
AAKD LGWESKTN PED KERFEEYVKIGRDKK++KFELDDKI
Sbjct: 354 AAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKI 396
>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
FORWARD
Length = 379
Score = 78 bits (190), Expect = 8e-015
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 616 SFNIFNCLSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFPFRNMHFYGEP 792
S IFN ++ VT DG+AK CA A G EIVHY+PK KKAFPFR+ HF+
Sbjct: 267 SREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASV 326
Query: 793 RAAKDKLGWESKTNFPEDFKERFEEYVKIGRDKKDMKFELDDKI 924
AK LGW+ + + E + + G +K+ F DD I
Sbjct: 327 EKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMI 370
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,057,924,028
Number of Sequences: 33410
Number of Extensions: 6057924028
Number of Successful Extensions: 221563250
Number of sequences better than 0.0: 0
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