BLASTX 7.6.2
Query= UN11485 /QuerySize=1281
(1280 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|8778340|gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 335 9e-090
gi|13992688|gb|AAK51582.1|AC022352_18 Putative retroelement [Ory... 293 7e-077
gi|50878384|gb|AAT85159.1| unknown protein [Oryza sativa Japonic... 292 1e-076
gi|91795223|gb|ABE60891.1| putative polyprotein [Oryza sativa Ja... 292 1e-076
gi|115479893|ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japo... 290 4e-076
gi|108709232|gb|ABF97027.1| retrotransposon protein, putative, T... 288 2e-075
gi|22296822|gb|AAM94350.1| gag-pol polyprotein [Zea mays] 288 2e-075
gi|15340827|gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 285 1e-074
gi|6705984|dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Ind... 285 1e-074
gi|15340828|gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 284 2e-074
gi|15187182|gb|AAK91332.1|AC090441_14 Putative gag-pol polyprote... 284 3e-074
gi|34015213|gb|AAQ56407.1| putative gag-pol polyprotein [Oryza s... 283 5e-074
gi|53749310|gb|AAU90169.1| putative polyprotein [Oryza sativa Ja... 283 5e-074
gi|115392332|gb|ABI96971.1| putative gag-pol polyprotein [Tritic... 283 5e-074
gi|34015141|gb|AAQ56338.1| putative gag-pol polyprotein [Oryza s... 282 9e-074
gi|34015193|gb|AAQ56388.1| putative gag-pol polyprotein [Oryza s... 282 2e-073
gi|4325354|gb|AAD17351.1| contains similarity to retrovirus-rela... 269 8e-070
gi|56744298|gb|AAW28577.1| Putative gag-pol polyprotein, identic... 265 1e-068
gi|56744299|gb|AAW28578.1| Putative gag-pol polyprotein, identic... 265 1e-068
gi|113205445|gb|AAW28576.2| Gag-pol polyprotein, putative [Solan... 265 1e-068
>gi|8778340|gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 335 bits (859), Expect = 9e-090
Identities = 155/197 (78%), Positives = 178/197 (90%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHKTD+A++IA+LFF+EVVRLHGMP++IVSDRDTKFLSYFWKTLWSKL TK
Sbjct: 1483 FSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTK 1542
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+TLLRA+IKKN+KTWEDCLPHVEFAYNHS+H A+KFSP
Sbjct: 1543 LLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSP 1602
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
FQIVYGFNP TPLDL+P+P E+++LDGK KAE V HEQ KKNIEE+TK+YA+ ANK
Sbjct: 1603 FQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKS 1662
Query: 54 RRGLILEPGDLVTIHLR 4
R+ +I GDLV IHLR
Sbjct: 1663 RKEVIFNEGDLVWIHLR 1679
>gi|13992688|gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa
Japonica Group]
Length = 2447
Score = 293 bits (748), Expect = 7e-077
Identities = 133/197 (67%), Positives = 161/197 (81%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHKTD+A +IADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1292 FSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1351
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WE+CLPH+EFAYN S+H TK P
Sbjct: 1352 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCP 1411
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
FQIVYG P P+DL+P+P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 1412 FQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKG 1471
Query: 54 RRGLILEPGDLVTIHLR 4
RR L EPGDLV +HLR
Sbjct: 1472 RRELTFEPGDLVWLHLR 1488
>gi|50878384|gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
Length = 681
Score = 292 bits (746), Expect = 1e-076
Identities = 131/197 (66%), Positives = 165/197 (83%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A +IA LFF E+VRLHGMP++IVSDRDTKFLSYFWKTLW+KL T+
Sbjct: 263 FSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTR 322
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+ LLRA+IKKN+K WE+CLPHVEFAYN +VH T P
Sbjct: 323 LLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCP 382
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGF PL+P+DLLP+P +E+ +++ +A +V HE+ K+ IE+R+K YA +ANK
Sbjct: 383 FEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKN 442
Query: 54 RRGLILEPGDLVTIHLR 4
R+ + EPGDLV +HLR
Sbjct: 443 RKKVTFEPGDLVWVHLR 459
>gi|91795223|gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 292 bits (746), Expect = 1e-076
Identities = 131/197 (66%), Positives = 165/197 (83%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A +IA LFF E+VRLHGMP++IVSDRDTKFLSYFWKTLW+KL T+
Sbjct: 1295 FSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTR 1354
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+ LLRA+IKKN+K WE+CLPHVEFAYN +VH T P
Sbjct: 1355 LLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCP 1414
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGF PL+P+DLLP+P +E+ +++ +A +V HE+ K+ IE+R+K YA +ANK
Sbjct: 1415 FEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKN 1474
Query: 54 RRGLILEPGDLVTIHLR 4
R+ + EPGDLV +HLR
Sbjct: 1475 RKKVTFEPGDLVWVHLR 1491
>gi|115479893|ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
Length = 681
Score = 290 bits (741), Expect = 4e-076
Identities = 131/197 (66%), Positives = 163/197 (82%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A +IA LFF E+VRLHGMP++IVSDRDTKFLSYFWKTLW+KL T+
Sbjct: 263 FSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTR 322
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+ LLRA+IKKN+K WE+CLPHVEFAYN +VH T P
Sbjct: 323 LLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCP 382
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGF PL P+DLLP+P +E+ +++ A +V HE+ K+ IE+R+K YA +ANK
Sbjct: 383 FEVVYGFKPLAPIDLLPLPLQERSDMEASKHATYVKKIHEKTKEAIEKRSKYYAAWANKD 442
Query: 54 RRGLILEPGDLVTIHLR 4
R+ + EPGDLV +HLR
Sbjct: 443 RKKVTFEPGDLVWVHLR 459
>gi|108709232|gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy
subclass [Oryza sativa Japonica Group]
Length = 889
Score = 288 bits (736), Expect = 2e-075
Identities = 130/197 (65%), Positives = 161/197 (81%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A ++ADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 633 FSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 692
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WE+CLPHVEFAYNHS H TK P
Sbjct: 693 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCP 752
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYG P P+DLLP+P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 753 FEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSKG 812
Query: 54 RRGLILEPGDLVTIHLR 4
++ + EPGDLV +HLR
Sbjct: 813 KKHVAFEPGDLVWLHLR 829
>gi|22296822|gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 288 bits (735), Expect = 2e-075
Identities = 130/197 (65%), Positives = 159/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHKTD+A +IADLFF+E+VRLHG+P +IVSDRD KFLS+FW+TLW+KL TK
Sbjct: 1295 FSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTK 1354
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WEDCLPH+EFAYN S+H TK P
Sbjct: 1355 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCP 1414
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
FQIVYG P P+DL+P+P E++N D +AE ++ HE K+NIE Y ++KG
Sbjct: 1415 FQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKG 1474
Query: 54 RRGLILEPGDLVTIHLR 4
R+ + EPGDLV +HLR
Sbjct: 1475 RKEINFEPGDLVWLHLR 1491
>gi|15340827|gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 285 bits (729), Expect = 1e-074
Identities = 126/197 (63%), Positives = 158/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A N+ADLFF+E++RLHG+P +IVSDRD KFLS+FW+ LW+KL TK
Sbjct: 1351 FSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTK 1410
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNR+L+T+LRAV+K NIK WE+CLPH+EFAYN S+H TK P
Sbjct: 1411 LLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCP 1470
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYGF P P+DLLPIP E++N D K +AE ++ HE K+NIE Y +KG
Sbjct: 1471 FEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKG 1530
Query: 54 RRGLILEPGDLVTIHLR 4
R+ ++ PGDLV +HLR
Sbjct: 1531 RKHVVFAPGDLVWLHLR 1547
>gi|6705984|dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 285 bits (728), Expect = 1e-074
Identities = 129/197 (65%), Positives = 160/197 (81%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A ++ADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1320 FSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1379
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WE+CLPHVEFAYN S H TK P
Sbjct: 1380 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCP 1439
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYG P P+DLLP+P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 1440 FEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKG 1499
Query: 54 RRGLILEPGDLVTIHLR 4
++ + EPGDLV +HLR
Sbjct: 1500 KKHVAFEPGDLVWLHLR 1516
>gi|15340828|gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 284 bits (726), Expect = 2e-074
Identities = 125/197 (63%), Positives = 158/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A N+ADLFF+E++RLHG+P +IVSDRD KFLS+FW+ LW+KL TK
Sbjct: 1348 FSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTK 1407
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNR+L+T+LRAV+K N+K WE+CLPH+EFAYN S+H TK P
Sbjct: 1408 LLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCP 1467
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYGF P P+DLLPIP E++N D K +AE ++ HE K+NIE Y +KG
Sbjct: 1468 FEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKG 1527
Query: 54 RRGLILEPGDLVTIHLR 4
R+ ++ PGDLV +HLR
Sbjct: 1528 RKHVVFAPGDLVWLHLR 1544
>gi|15187182|gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza
sativa Japonica Group]
Length = 1708
Score = 284 bits (725), Expect = 3e-074
Identities = 129/197 (65%), Positives = 159/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A ++ADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1320 FSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1379
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WE+CLPHVEFAYN S H TK P
Sbjct: 1380 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCP 1439
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYG P P+DLLP+P E++N D K AE ++ HE K+NIE +Y +KG
Sbjct: 1440 FEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGSKG 1499
Query: 54 RRGLILEPGDLVTIHLR 4
++ + EPGDLV +HLR
Sbjct: 1500 KKHVAFEPGDLVWLHLR 1516
>gi|34015213|gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica
Group]
Length = 1619
Score = 283 bits (723), Expect = 5e-074
Identities = 128/197 (64%), Positives = 160/197 (81%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A ++ADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1216 FSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1275
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRT++T+LRAV+KKNIK WE+CLPHVEFAYN S H TK P
Sbjct: 1276 LLFSTTCHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCP 1335
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYG P P+DLLP+P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 1336 FEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKG 1395
Query: 54 RRGLILEPGDLVTIHLR 4
++ + EPGDLV +HLR
Sbjct: 1396 KKHVAFEPGDLVWLHLR 1412
>gi|53749310|gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1154
Score = 283 bits (723), Expect = 5e-074
Identities = 127/197 (64%), Positives = 162/197 (82%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI C+K+D+A ++ADLFF+EVVRLHG+PR+IVSDRD KF+SYFWKTLW+KL TK
Sbjct: 894 FSKMAHFIPCNKSDDASHVADLFFREVVRLHGVPRTIVSDRDVKFMSYFWKTLWAKLGTK 953
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCH Q DGQ EVVNRTL+ LLR +IKKN+K WEDCLPHVEFAYN VH T+ SP
Sbjct: 954 LLFSTTCHSQIDGQMEVVNRTLSMLLRMMIKKNLKEWEDCLPHVEFAYNRVVHSTTQLSP 1013
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGFNP+TPLDLLP+P +E+ N++ +A++V HE+ K+ IE + YA ANK
Sbjct: 1014 FEVVYGFNPITPLDLLPLPLQERANMEATKRADYVKKMHEKTKETIERIIQSYAAKANKD 1073
Query: 54 RRGLILEPGDLVTIHLR 4
R+ ++ +PG+LV +HLR
Sbjct: 1074 RKKMLFQPGELVWVHLR 1090
>gi|115392332|gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum
subsp. aegilopoides]
Length = 1704
Score = 283 bits (723), Expect = 5e-074
Identities = 124/197 (62%), Positives = 159/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A+N+ADLFF+E++RLHG+P +IVSDRDTKFLS+FW+ LW+KL K
Sbjct: 1336 FSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNK 1395
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+T+LRAV+K N K WE+CLPH+EFAYN S+H TK P
Sbjct: 1396 LLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCP 1455
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYGF P P+DLLP+P E++N D K ++E ++ HE K+NIE +Y +KG
Sbjct: 1456 FEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKG 1515
Query: 54 RRGLILEPGDLVTIHLR 4
R+ ++ PGDLV +HLR
Sbjct: 1516 RKHVVFAPGDLVWLHLR 1532
>gi|34015141|gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica
Group]
Length = 1619
Score = 282 bits (721), Expect = 9e-074
Identities = 129/197 (65%), Positives = 157/197 (79%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKM HFI CHKTD+A +IADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1271 FSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1330
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQ EVVNRTL+T+LRAV+KKNIK WE+CLPH+EFA N S+H TK P
Sbjct: 1331 LLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCP 1390
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
FQIVY P P+DL+P+P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 1391 FQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKG 1450
Query: 54 RRGLILEPGDLVTIHLR 4
RR L EPGDLV +HLR
Sbjct: 1451 RRELNFEPGDLVWLHLR 1467
>gi|34015193|gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica
Group]
Length = 1616
Score = 282 bits (719), Expect = 2e-073
Identities = 128/197 (64%), Positives = 158/197 (80%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHK+D+A ++ADLFF+E+VRLHG+P +IVSDRDTKFLS+FW+TLW+KL TK
Sbjct: 1320 FSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK 1379
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
+FSTTCHPQTDGQTEVVNRTL+T+LRAV+KKNIK WE+CLPHVEFAYN S H TK P
Sbjct: 1380 FLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCP 1439
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F+IVYG P P+DLLP P E++N D K +AE ++ HE K+NIE +Y +KG
Sbjct: 1440 FEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKG 1499
Query: 54 RRGLILEPGDLVTIHLR 4
++ + EPGDLV +HLR
Sbjct: 1500 KKHVAFEPGDLVWLHLR 1516
>gi|4325354|gb|AAD17351.1| contains similarity to retrovirus-related
polyproteins and to CCHC zinc finger protein (Pfam: PF00098,
Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana]
Length = 1138
Score = 269 bits (687), Expect = 8e-070
Identities = 122/139 (87%), Positives = 136/139 (97%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMAHFI CHKTD+A++IA+LFF+EVVRLHGMP++IVSDRDTKFLSYFWKTLWSKL TK
Sbjct: 858 FSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTK 917
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FSTTCHPQTDGQTEVVNRTL+TLLRA+IKKN+KTWEDCLPHVEFAYNHSVH ATKFSP
Sbjct: 918 LLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSP 977
Query: 234 FQIVYGFNPLTPLDLLPIP 178
FQIVYGFNP+TPLDL+P+P
Sbjct: 978 FQIVYGFNPITPLDLMPLP 996
>gi|56744298|gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum
demissum]
Length = 1588
Score = 265 bits (676), Expect = 1e-068
Identities = 123/197 (62%), Positives = 156/197 (79%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMA FI C KT++A ++ADLF KEVV+LHG+PR+IVSDRD KFLS+FW+ LW KL TK
Sbjct: 1245 FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTK 1304
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FST+CHPQTDGQTEVVNRTL +LRA++K + +WED LP VEFAYN + H +T +P
Sbjct: 1305 LLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTP 1364
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGFNPLTPLDLLP+P + NLDGK KA+ + HEQ + IE++ KE A NKG
Sbjct: 1365 FEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKG 1424
Query: 54 RRGLILEPGDLVTIHLR 4
R+ +I +PGDLV +H+R
Sbjct: 1425 RKYVIFKPGDLVWVHMR 1441
>gi|56744299|gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum
demissum]
Length = 1588
Score = 265 bits (676), Expect = 1e-068
Identities = 123/197 (62%), Positives = 156/197 (79%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMA FI C KT++A ++ADLF KEVV+LHG+PR+IVSDRD KFLS+FW+ LW KL TK
Sbjct: 1245 FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTK 1304
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FST+CHPQTDGQTEVVNRTL +LRA++K + +WED LP VEFAYN + H +T +P
Sbjct: 1305 LLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTP 1364
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGFNPLTPLDLLP+P + NLDGK KA+ + HEQ + IE++ KE A NKG
Sbjct: 1365 FEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKG 1424
Query: 54 RRGLILEPGDLVTIHLR 4
R+ +I +PGDLV +H+R
Sbjct: 1425 RKYVIFKPGDLVWVHMR 1441
>gi|113205445|gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
Length = 1096
Score = 265 bits (676), Expect = 1e-068
Identities = 123/197 (62%), Positives = 156/197 (79%)
Frame = -3
Query: 594 FSKMAHFIACHKTDNALNIADLFFKEVVRLHGMPRSIVSDRDTKFLSYFWKTLWSKLETK 415
FSKMA FI C KT++A ++ADLF KEVV+LHG+PR+IVSDRD KFLS+FW+ LW KL TK
Sbjct: 753 FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTK 812
Query: 414 LMFSTTCHPQTDGQTEVVNRTLATLLRAVIKKNIKTWEDCLPHVEFAYNHSVHRATKFSP 235
L+FST+CHPQTDGQTEVVNRTL +LRA++K + +WED LP VEFAYN + H +T +P
Sbjct: 813 LLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTP 872
Query: 234 FQIVYGFNPLTPLDLLPIPYKEQINLDGKAKAEFVVSFHEQVKKNIEERTKEYARFANKG 55
F++VYGFNPLTPLDLLP+P + NLDGK KA+ + HEQ + IE++ KE A NKG
Sbjct: 873 FEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKG 932
Query: 54 RRGLILEPGDLVTIHLR 4
R+ +I +PGDLV +H+R
Sbjct: 933 RKYVIFKPGDLVWVHMR 949
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,313,363,328,120
Number of Sequences: 15229318
Number of Extensions: 1313363328120
Number of Successful Extensions: 373990951
Number of sequences better than 0.0: 0
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